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An open API service providing dependency metadata for docker images.

Package Usage : maven : org.broadinstitute.hellbender.Main:gatk-package

Explore the latest package usage data for org.broadinstitute.hellbender.Main:gatk-package in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 163
Total downloads: 74,424,344

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 4.beta.1-local, 4.beta.1-spark
Latest release: about 9 years ago - 41,257,317 downloads - 951 dependencies
broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

  • version: 4.3.0.0-spark, 4.3.0.0-local, 4.5.0.0-spark, 4.5.0.0-local, 4.4.0.0-spark, 4.4.0.0-local
Latest release: 9 months ago - 40,063,891 downloads - 912 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 4.2.4.0-local, 4.2.4.0-spark
Latest release: over 2 years ago - 96,569 downloads - 4,112 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 4.5.0.0-3-gb68fadc-SNAPSHOT-spark, 4.4.0.0-63-g7058e0c-SNAPSHOT-spark, 4.4.0.0-12-g0374937-SNAPSHOT-local, 4.4.0.0-63-g7058e0c-SNAPSHOT-local, 4.5.0.0-3-gb68fadc-SNAPSHOT-local, 4.4.0.0-SNAPSHOT-local, 4.4.0.0-12-g0374937-SNAPSHOT-spark, 4.4.0.0-SNAPSHOT-spark
Latest release: 12 months ago - 186,109 downloads - 912 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 4.2.0.0-local
Latest release: 4 months ago - 48,015 downloads - 738 dependencies
broadinstitute/terra-jupyter-gatk 0.0.13

  • version: 4.1.4.1-spark, 4.1.4.1-local
Latest release: over 5 years ago - 2,366 downloads - 3,913 dependencies
broadinstitute/fungal_gatk4 gatk4.5.0.0

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: about 1 year ago - 17,596 downloads - 942 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 4.1.7.0-spark, 4.1.7.0-local
Latest release: about 3 years ago - 1,072,589 downloads - 607 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 4.1.7.0-local, 4.1.7.0-spark
Latest release: about 5 years ago - 38,652 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 31,557 downloads - 1,038 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 22,283 downloads - 1,138 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 4.2.4.1-spark, 4.2.4.1-local
Latest release: over 3 years ago - 13,419 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 4.1.7.0-local, 4.1.7.0-spark
Latest release: about 5 years ago - 10,133 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 4.1.7.0-spark, 4.1.7.0-local
Latest release: almost 5 years ago - 8,190 downloads - 1,007 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 5,139 downloads - 1,140 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 4.1.6.0-spark, 4.1.6.0-local
Latest release: over 5 years ago - 4,299 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: about 5 years ago - 3,411 downloads - 842 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 3,015 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: over 2 years ago - 2,759 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 4.2.0.0-local, 4.2.0.0-spark
Latest release: over 4 years ago - 2,318 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 3,414 downloads - 1,043 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 4.1.9.0-SNAPSHOT-spark, 4.1.9.0-SNAPSHOT-local
Latest release: over 4 years ago - 2,229 downloads - 967 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.1.6

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 1 year ago - 2,735 downloads - 346 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 2,123 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 2,224 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: over 2 years ago - 2,090 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 4.2.0.0-spark, 4.2.0.0-local
Latest release: over 3 years ago - 1,718 downloads - 957 dependencies
hoonbiolab/cellranger v1.0

  • version: 4.1.8.1-local
Latest release: over 3 years ago - 925 downloads - 682 dependencies
intelliseqngs/task_vcf-prepare 1.0.4

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: about 1 year ago - 1,538 downloads - 1,038 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 4.0.7.0-local
Latest release: over 6 years ago - 1,192 downloads - 616 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 4.1.7.0-spark, 4.1.7.0-local
Latest release: about 5 years ago - 657 downloads - 842 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: over 3 years ago - 624 downloads - 946 dependencies
wiebekenza/pac latest

  • version: 4.1.2.0-local
Latest release: over 2 years ago - 517 downloads - 412 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: over 2 years ago - 978 downloads - 1,057 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 4.2.6.1-spark, 4.2.6.1-local
Latest release: over 2 years ago - 403 downloads - 849 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: over 3 years ago - 368 downloads - 946 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 431 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 342 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 4.0.3.0-spark, 4.0.3.0-local
Latest release: about 5 years ago - 360 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 4.3.0.0-spark, 4.3.0.0-local
Latest release: over 2 years ago - 708 downloads - 1,040 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 340 downloads - 1,142 dependencies
hoonbiolab/align_dna v1.3

  • version: 4.1.8.1-local
Latest release: almost 4 years ago - 277 downloads - 794 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 2 years ago - 340 downloads - 1,038 dependencies
intelliseqngs/task_vcf-filter-align-errors 1.1.0

  • version: 4.1.3.0-spark, 4.1.3.0-local
Latest release: over 3 years ago - 303 downloads - 566 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 4.1.4.1-spark, 4.1.0.0-local, 4.1.0.0-spark, 4.1.4.1-local
Latest release: almost 5 years ago - 285 downloads - 965 dependencies
intelliseqngs/astrolabe 1.0.0

  • version: 4.1.7.0-local
Latest release: almost 5 years ago - 195 downloads - 1,097 dependencies