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Package Usage : maven : org.broadinstitute.hellbender.Main:gatk-package

Explore the latest package usage data for org.broadinstitute.hellbender.Main:gatk-package in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 163
Total downloads: 74,424,344
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 4.3.0.0-local, 4.3.0.0-spark, 4.4.0.0-local, 4.4.0.0-spark
Latest release: about 1 year ago - 40,749,690 downloads - 513 dependencies
ctomlins/tellread_2022 latest

  • version: 4.1.4.0-local
Latest release: over 3 years ago - 62 downloads - 711 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: about 3 years ago - 205 downloads - 1,047 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 4.1.7.0-local, 4.1.7.0-spark
Latest release: about 6 years ago - 95 downloads - 866 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 4.2.0.0-local
Latest release: about 1 year ago - 50,342 downloads - 738 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: about 3 years ago - 130 downloads - 1,144 dependencies
luisas/gatk latest

  • version: 4.0.4.0-local, 4.0.4.0-spark
Latest release: almost 8 years ago - 110 downloads - 374 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 4.4.0.0-SNAPSHOT-local, 4.4.0.0-SNAPSHOT-spark, 4.5.0.0-3-gb68fadc-SNAPSHOT-local, 4.5.0.0-3-gb68fadc-SNAPSHOT-spark, 4.4.0.0-12-g0374937-SNAPSHOT-local, 4.4.0.0-12-g0374937-SNAPSHOT-spark
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
fionahak/gatk_genotube v0.0.1

  • version: 4.3.0.0-local
Latest release: about 3 years ago - 115 downloads - 303 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 4.1.9.0-SNAPSHOT-local, 4.1.9.0-SNAPSHOT-spark
Latest release: over 5 years ago - 2,229 downloads - 967 dependencies
ctomlins/testuniv latest

  • version: 4.1.4.0-local
Latest release: over 4 years ago - 128 downloads - 536 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: about 3 years ago - 1,113 downloads - 1,057 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 4.2.6.1-local, 4.2.6.1-spark
Latest release: over 3 years ago - 403 downloads - 849 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 110 downloads - 828 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 96 downloads - 840 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 62 downloads - 811 dependencies
hoonbiolab/ascat v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 52 downloads - 792 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 4.2.6.1-local, 4.2.6.1-spark
Latest release: over 3 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 4.2.0.0-local, 4.2.0.0-spark
Latest release: over 4 years ago - 218 downloads - 1,057 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: over 3 years ago - 206 downloads - 1,118 dependencies
ctomlins/testuniv_update latest

  • version: 4.1.4.0-local
Latest release: over 5 years ago - 208 downloads - 758 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: over 2 years ago - 525 downloads - 1,059 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 4.2.6.0-local, 4.2.6.0-spark
Latest release: about 3 years ago - 17,484 downloads - 839 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: about 3 years ago - 757 downloads - 1,367 dependencies
intelliseqngs/task_vcf-anno-custom 1.0.1

  • version: 4.1.7.0-local, 4.1.7.0-spark
Latest release: over 5 years ago - 72 downloads - 1,025 dependencies
hoonbiolab/hl_base v1.2

  • version: 4.1.8.1-local
Latest release: over 3 years ago - 177 downloads - 873 dependencies
hoonbiolab/sequenza v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 36 downloads - 801 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: about 3 years ago - 116 downloads - 1,049 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: about 6 years ago - 225 downloads - 928 dependencies
hoonbiolab/svtools v0.4.0

  • version: 4.1.8.1-local
Latest release: over 2 years ago - 153 downloads - 681 dependencies
man4ish/demuxlet_v3 latest

  • version: 4.1.2.0-37-g90fd39b-SNAPSHOT-local, 4.1.2.0-37-g90fd39b-SNAPSHOT-spark, 4.1.2.0-local, 4.1.2.0-spark
Latest release: over 3 years ago - 86 downloads - 618 dependencies
gru4/scan2workinghg38 latest

  • version: 4.3.0.0-local
Latest release: almost 3 years ago - 75 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 4.3.0.0-local
Latest release: almost 3 years ago - 95 downloads - 777 dependencies
hoonbiolab/ngscheckmate v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 37 downloads - 653 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 4.beta.6-169-g1efafd2-SNAPSHOT-local, 4.beta.6-169-g1efafd2-SNAPSHOT-spark
Latest release: over 8 years ago - 105 downloads - 1,213 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 4.1.9.0-SNAPSHOT-local, 4.1.9.0-SNAPSHOT-spark
Latest release: about 5 years ago - 28 downloads - 677 dependencies
bokebiotech/qcpipe v6

  • version: 4.1.4.1-local, 4.1.4.1-spark, 4.3.0.0-local, 4.3.0.0-spark
Latest release: almost 3 years ago - 481 downloads - 1,186 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 4.2.6.1-local, 4.2.6.1-spark
Latest release: about 3 years ago - 15 downloads - 1,069 dependencies
yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 4.2.2.0-local, 4.2.2.0-spark
Latest release: over 4 years ago - 25 downloads - 1,570 dependencies
bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

  • version: 4.3.0.0-local
Latest release: about 3 years ago - 108 downloads - 479 dependencies
nahyunkong/mito v6

  • version: 4.3.0.0-local
Latest release: about 3 years ago - 17,100 downloads - 2,488 dependencies
hoonbiolab/sratools v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 33 downloads - 652 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 4.1.6.0-local, 4.1.6.0-spark
Latest release: about 6 years ago - 30 downloads - 437 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 4.2.6.1-local
Latest release: over 2 years ago - 235 downloads - 499 dependencies
ctomlins/tseq_2 latest

  • version: 4.1.4.0-local
Latest release: over 5 years ago - 47 downloads - 538 dependencies
ctomlins/tseq latest

  • version: 4.1.4.0-local
Latest release: over 5 years ago - 25 downloads - 536 dependencies
hoonbiolab/clustersv v1.1

  • version: 4.1.8.1-local
Latest release: about 4 years ago - 24 downloads - 718 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 4.2.4.1-local, 4.2.4.1-spark
Latest release: about 4 years ago - 81 downloads - 964 dependencies
hoonbiolab/mixcr v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 44 downloads - 710 dependencies
hoonbiolab/funcotate v1.1

  • version: 4.1.0.0-local, 4.1.8.1-local
Latest release: over 4 years ago - 39 downloads - 777 dependencies
hoonbiolab/lohhla v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 74 downloads - 708 dependencies
hoonbiolab/star v1.1

  • version: 4.0.9.0-local, 4.1.8.1-local
Latest release: over 4 years ago - 38 downloads - 782 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 4.3.0.0-local, 4.3.0.0-spark
Latest release: over 1 year ago - 510 downloads - 1,367 dependencies
hoonbiolab/pvacseq v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 48 downloads - 682 dependencies
hoonbiolab/imagemagick v1.1

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 46 downloads - 681 dependencies
hoonbiolab/prada v1.2

  • version: 4.1.8.1-local
Latest release: over 4 years ago - 91 downloads - 699 dependencies
hoonbiolab/msisensor-pro v1.0

  • version: 4.1.8.1-local
Latest release: almost 4 years ago - 28 downloads - 688 dependencies