broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

apachepinot/pinot 1.2.0

Pinot is a real-time distributed OLAP datastore, built to deliver scalable real-time analytics.

scalableminds/webknossos 23.12.0

broadinstitute/picard 3.3.0

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

geerlingguy/solr 9.4.1

Apache Solr image built from the Ansible Role geerlingguy.solr

broadinstitute/terra-jupyter-aou 2.1.13

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

scalableminds/webknossos-datastore 23.12.0

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

scalableminds/webknossos-tracingstore 23.12.0

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

wodby/base-solr 8.11.2

dhspence/docker-genomic-analysis 122121

From Chris Miller's example

dbeaver/cloudbeaver-ee 25.0.0

CloudBeaver Enterprise Edition. Use branch "latest" to get the latest version.

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

vdesabou/kafka-docker-playground-connect-operator 6.1.3

dbeaver/cloudbeaver-dc 24.2.0

Part of DBeaver Team Edition Cluster. Controller Node.

dbeaver/cloudbeaver-aws 25.0.0

CloudBeaver for AWS image.

broadinstitute/terra-jupyter-gatk 0.0.13

testlagoon/solr-8-drupal pr-1292

testlagoon/solr-8 pr-1138

broadinstitute/fungal_gatk4 gatk4.5.0.0

lucidworks/fusion-solr 8.11.1

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

intelliseqngs/task_bam-metrics 1.2.8

entando/entando-solr 8

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/gatk-4.1.9.0 1.0.0

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

hoonbiolab/cellranger v1.0

intelliseqngs/task_vcf-prepare 1.0.4

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

wiebekenza/pac latest

daiming/pinotauth 20220705.1

intelliseqngs/task_bed-to-interval-list 1.1.5

dbeaver/cloudbeaver-te 24.3.0

Part of DBeaver Team Edition Cluster. Web Services Node.

qdidiscoveryservices/gatk-v2461_bwa_aws latest

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

vanallenlab/sv-pipeline-qc gnomad_v3_qc

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

hoonbiolab/align_dna v1.3

intelliseqngs/task_pileup-merge 1.0.2

intelliseqngs/task_vcf-filter-align-errors 1.1.0

trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

spotify/hype 1

A library for seamlessly executing arbitrary JVM closures in Docker containers on Kubernetes.

rajagile/solr 8.10.1

intelliseqngs/astrolabe 1.0.0

intelliseqngs/bcl-to-fq 1.0.2

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

ctomlins/testuniv_update latest

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

hoonbiolab/hl_base v1.2

intelliseqngs/collect-hs-metrics 1.0.0

intelliseqngs/gatk-4.2.4.1 1.0.1

trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline