broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

ctomlins/tellread_2022 latest

intelliseqngs/bcl-to-fq 1.0.2

dmiller15/gatk 4.1.7.0R0.1

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

intelliseqngs/task_bam-metrics-hg38 1.0.2

luisas/gatk latest

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

fionahak/gatk_genotube v0.0.1

intelliseqngs/gatk-4.1.9.0 1.0.0

ctomlins/testuniv latest

intelliseqngs/task_bed-to-interval-list 1.1.5

qdidiscoveryservices/gatk-v2461_bwa_aws latest

hoonbiolab/variantannotation_r v1.1

hoonbiolab/vcf-kit v1.1

hoonbiolab/gatk4_scnv v1.1

fizban007/aperture_dev latest

hoonbiolab/ascat v1.1

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

intelliseqngs/gatk-4.2.4.1 1.0.1

ctomlins/testuniv_update latest

intelliseqngs/resources-pgx-polygenic 1.2.4

rahulg603/gatk_samtools_docker latest

skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

intelliseqngs/task_vcf-anno-custom 1.0.1

hoonbiolab/hl_base v1.2

hoonbiolab/sequenza v1.1

intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

intelliseqngs/collect-hs-metrics 1.0.0

hoonbiolab/svtools v0.4.0

trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

man4ish/demuxlet_v3 latest

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

gru4/scan2workinghg38 latest

gru4/scan2fixedhg38 latest

hoonbiolab/ngscheckmate v1.1

broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

bokebiotech/qcpipe v6

qdidiscoveryservices/gatk-v2461_bwa_vardict latest

yiluxiangbei/pumpkin-gatk-notebook 1.0

bryoinformatics/variant-id v1.0.0

A container for the variant-ID pipeline (https://github.com/bryoinformatics/variant-ID).

nahyunkong/mito v6

hoonbiolab/sratools v1.1

intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

dabbleofdevops/nextneopi 20230817

ctomlins/tseq_2 latest

ctomlins/tseq latest

hoonbiolab/clustersv v1.1

intelliseqngs/pharmcat-resources 1.1.0

hoonbiolab/mixcr v1.1

hoonbiolab/funcotate v1.1

hoonbiolab/lohhla v1.1

hoonbiolab/star v1.1

skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

hoonbiolab/pvacseq v1.1

hoonbiolab/imagemagick v1.1

hoonbiolab/prada v1.2

hoonbiolab/msisensor-pro v1.0

hoonbiolab/test2 v1.0

hoonbiolab/ensembl_vep v1.1

hoonbiolab/titan v1.1

hoonbiolab/optitype v1.1

hoonbiolab/vep v1.1

chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

intelliseqngs/broad-institute-hg38 1.0.0

cloxd/ctat-mutations 3.3.1

intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

dpuiu1/mitohpc latest

hoonbiolab/revertsam v1.1

almadengenomics/gatk 4.4.0.0

intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

crukmi/target-snakemake-docker 3.2.2

chgyi/gatk 4

intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

bioxfu/ddngs latest

hoonbiolab/test v1.0

barryd237/week2 latest

coacervate/provider latest

hoonbiolab/freebayes v1.1

arnstrm2/gatk 4.4.0

yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

keithgraham5/cnvrobot_v4_2 latest

oriolpich/rsem latest

ajsos/hms-runner v0.0.1

nahyunkong/sv-pipeline latest

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

philiplin1212/gatk latest

elle72/testthis2 vs1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0