Ecosyste.ms: Docker

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Package Usage : maven : org.usadellab.trimmomatic.Trimmomatic:trimmomatic

Explore the latest package usage data for org.usadellab.trimmomatic.Trimmomatic:trimmomatic in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 71
Total downloads: 259,119

More details on packages.ecosyste.ms - JSON

broadinstitute/viral-core latest

  • version: *
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: *
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
nfcore/rnafusion fusioninspector_2.8.0dev

A Docker image for the nf-core/rnafusion pipeline.

  • version: 0.36
Latest release: over 2 years ago - 24,036 downloads - 1,302 dependencies
biocontainers/trimmomatic v0.38dfsg-1-deb_cv1

  • version: 0.38
Latest release: about 5 years ago - 21,571 downloads - 206 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 0.38
Latest release: about 5 years ago - 7,963 downloads - 831 dependencies
broadinstitute/viral-assemble latest

  • version: *
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: *
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
qdidiscoveryservices/crispresso2-biopy 2.2.12-test

  • version: *
Latest release: over 1 year ago - 5,160 downloads - 181 dependencies
bactopia/assemble_genome 2.2.0

  • version: *
Latest release: almost 2 years ago - 1,742 downloads - 230 dependencies
nextgenusfs/funannotate-slim v1.8.15

Base funannotate image (no databases)

  • version: *, 0.36
Latest release: over 1 year ago - 630 downloads - 261 dependencies
qdidiscoveryservices/crispresso2 2.1.3.1

  • version: *
Latest release: about 3 years ago - 515 downloads - 220 dependencies
nfcore/bactmap dev

A Docker container for the bactmap pipeline.

  • version: *
Latest release: over 5 years ago - 782 downloads - 223 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: *
Latest release: almost 2 years ago - 237 downloads - 227 dependencies
gene110/trimmomatic v06

  • version: *
Latest release: over 3 years ago - 177 downloads - 207 dependencies
chgyi/bio 3.5.1

  • version: 0.36
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
chgyi/metaware_rna_denovo latest

  • version: *, 0.36
Latest release: over 5 years ago - 132 downloads - 2,095 dependencies
vanessa/encode-demo-workflow latest

  • version: 0.38
Latest release: about 5 years ago - 87 downloads - 492 dependencies
orionbioinfo/trimmomatic latest

  • version: 0.39
Latest release: almost 2 years ago - 69 downloads - 8 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 0.36
Latest release: over 1 year ago - 331 downloads - 980 dependencies
hoonbiolab/pepatac v1.1

  • version: 0.39, *
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
tercen/tracer_docker_operator latest

  • version: 0.36
Latest release: about 2 years ago - 37 downloads - 826 dependencies
docmanny/funannotate-docker latest

  • version: *, 0.36
Latest release: about 2 years ago - 36 downloads - 287 dependencies
dhspence/docker-crispresso latest

  • version: 0.33
Latest release: almost 7 years ago - 34 downloads - 588 dependencies
tercen/tracer_docker_operator_base 1.0.0

  • version: 0.36
Latest release: over 2 years ago - 36 downloads - 812 dependencies
galclbl/epityping latest

A repository for the epityping tool container

  • version: 0.39
Latest release: almost 2 years ago - 56 downloads - 123 dependencies
ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:latest with eukaryta db, phyml for dn/ds and a conda installation

  • version: 0.36, *
Latest release: over 1 year ago - 52 downloads - 338 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 0.39
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
bokebiotech/qcpipe v6

  • version: 0.39
Latest release: over 1 year ago - 115 downloads - 1,186 dependencies
koki/urchin_workflow_bioconda 20220527

  • version: *
Latest release: over 2 years ago - 26 downloads - 1,195 dependencies
hoonbiolab/star-fusion v1.0

  • version: 0.36
Latest release: almost 3 years ago - 22 downloads - 574 dependencies
mcrotti1/radseq latest

  • version: 0.38
Latest release: about 3 years ago - 18 downloads - 379 dependencies
tercen/tracer_summarize_docker_operator latest

  • version: 0.36
Latest release: over 2 years ago - 15 downloads - 760 dependencies
chgyi/trimmomatic 0.33

  • version: *
Latest release: over 4 years ago - 14 downloads - 172 dependencies
chgyi/trinity 2.8.4

  • version: 0.36
Latest release: over 5 years ago - 13 downloads - 795 dependencies
mgibio/starfusion pre-1.11.c-fefaf71

  • version: 0.36
Latest release: almost 2 years ago - 351 downloads - 574 dependencies
jolynnem/trimmomatic latest

  • version: 0.39
Latest release: almost 2 years ago - 14 downloads - 262 dependencies
broadinstitute/viral-classify 2.0.21.3

  • version: *
Latest release: over 4 years ago - 12 downloads - 423 dependencies
weishwu/squeezemeta 04052023

  • version: 0.38
Latest release: over 1 year ago - 22 downloads - 722 dependencies
mqmnd/trimmomatic amd-0.39

Trimmomatic installed on an ubuntu 20.04 base image. Trimmomatic repo also present in root dir

  • version: 0.39
Latest release: almost 2 years ago - 42 downloads - 9 dependencies
chriswyatt/trans_denovo_nonmodel-nf firsttry

  • version: *, 0.36
Latest release: about 5 years ago - 9 downloads - 139 dependencies
jieliu4wustl/wustl v0.1_20230907

  • version: 0.39
Latest release: about 1 year ago - 4,483 downloads - 1,124 dependencies
xonq/funannotate latest

  • version: *, 0.36
Latest release: over 1 year ago - 16 downloads - 161 dependencies
kumalpha/kneaddata latest

  • version: 0.33
Latest release: almost 2 years ago - 10 downloads - 39 dependencies
sagnikbanerjee15/trimmomatic 0.39

  • version: *
Latest release: almost 2 years ago - 8 downloads - 136 dependencies
dixonmd/nextflow_test latest

  • version: *
Latest release: over 1 year ago - 10 downloads - 221 dependencies
ericsalomaki/mirna 071723

  • version: 0.39
Latest release: over 1 year ago - 10 downloads - 1,834 dependencies
amcooksey/nal_rna_seq_annotation_pipeline testing

  • version: 0.38
Latest release: almost 2 years ago - 10 downloads - 865 dependencies
hbadrane/fungap version3

  • version: 0.36, *
Latest release: about 1 year ago - 44 downloads - 479 dependencies
shaodongwei/metagenomics v2

  • version: 0.39
Latest release: over 1 year ago - 7 downloads - 1,186 dependencies
flexxoble/temp2_sambamba v02

  • version: 0.36
Latest release: about 1 year ago - 5 downloads - 545 dependencies
danhumassmed/picard-trimmomatic 1.0.1

Software for Bioinformatics pipelines Picard & Trimmomatic

  • version: *
Latest release: over 1 year ago - 5 downloads - 244 dependencies
wangyanmin/fastseq-pipline latest

  • version: 0.38
Latest release: over 1 year ago - 9 downloads - 813 dependencies
ashedpotatoes/clockwork-plus v0.11.3.11-CDC

  • version: 0.36
Latest release: 11 months ago - 4,081 downloads - 1,500 dependencies
cjchen/tbtoolszone 2.0

  • version: 0.39
Latest release: over 1 year ago - 131 downloads - 789 dependencies
sbouslama/sb-nullarbor alpha1

  • version: *
Latest release: almost 2 years ago - 121 downloads - 181 dependencies
39dj29dl2d9l2/vec-ven 13

  • version: *
Latest release: about 1 year ago - 133 downloads - 747 dependencies
yuyanying/conda_alignments latest

  • version: *
Latest release: about 1 year ago - 56 downloads - 63 dependencies
gfanz/trimmomatic latest

Trimmomatic is a sequence read trimming tool for Illumina technology.

  • version: 0.39
Latest release: over 1 year ago - 67 downloads - 6 dependencies
souckmi/starfusion 1.0

  • version: 0.36
Latest release: almost 2 years ago - 32 downloads - 199 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: 0.38, *
Latest release: about 1 year ago - 30 downloads - 1,036 dependencies
andrewsg/atac latest

  • version: 0.38
Latest release: about 1 year ago - 42 downloads - 381 dependencies
souckmi/fusioninspector 1.0

  • version: 0.36
Latest release: almost 2 years ago - 22 downloads - 602 dependencies
cerebis/squeezemeta latest

  • version: 0.38
Latest release: over 1 year ago - 20 downloads - 386 dependencies
pauffret/trimming-box 1.0

Docker image containing trimming tools requirements for SSDS DMC1 pipeline.

  • version: *
Latest release: over 1 year ago - 18 downloads - 111 dependencies
tbreina1/crispresso latest

CRISPResso (https://github.com/tonyreina/CRISPResso) This is an updated version of the original code

  • version: *, 0.33
Latest release: over 1 year ago - 15 downloads - 119 dependencies
graefox/standard_qc_and_trim latest

Docker image for nextflow: standard QC and trim

  • version: 0.39
Latest release: over 1 year ago - 15 downloads - 895 dependencies
jdwiyanto/biobakery4 latest

  • version: 0.33
Latest release: over 1 year ago - 14 downloads - 832 dependencies
maxfieldkelsey/snakesenescence latest

image for use in snakemake

  • version: 0.39
Latest release: almost 2 years ago - 13 downloads - 494 dependencies
sangerbentleygroup/a1_bioinformatics_training 1.0.3

  • version: *
Latest release: over 1 year ago - 13 downloads - 1,240 dependencies
omicsclass/metagenomics latest

  • version: 0.39
Latest release: about 1 year ago - 13 downloads - 1,493 dependencies
arrakistx/shapeware_dependencies 3.4

  • version: *
Latest release: over 1 year ago - 12 downloads - 336 dependencies