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Package Usage : maven : org.usadellab.trimmomatic.Trimmomatic:trimmomatic

Explore the latest package usage data for org.usadellab.trimmomatic.Trimmomatic:trimmomatic in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 71
Total downloads: 259,119
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

tercen/tracer_docker_operator 0.1.1

  • version: 0.36
Latest release: about 4 years ago - 170 downloads - 826 dependencies
docmanny/funannotate-docker latest

  • version: *, 0.36
Latest release: over 3 years ago - 118 downloads - 287 dependencies
qdidiscoveryservices/crispresso2-biopy v2.3.4

Image for running largeAggregrate branch of CRISPResso2

  • version: *
Latest release: 5 months ago - 10,647 downloads - 181 dependencies
orionbioinfo/trimmomatic latest

  • version: 0.39
Latest release: over 3 years ago - 136 downloads - 8 dependencies
nextgenusfs/funannotate-slim v1.8.17

Base funannotate image (no databases)

  • version: *, 0.36
Latest release: over 2 years ago - 2,055 downloads - 261 dependencies
gene110/trimmomatic v06

  • version: *
Latest release: almost 5 years ago - 177 downloads - 207 dependencies
ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:1.8.15 with a working chlorophyte_odb10 set, phyml for dn/ds and micromamba

  • version: *, 0.36
Latest release: about 3 years ago - 133 downloads - 338 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 0.39
Latest release: over 4 years ago - 45 downloads - 2,335 dependencies
chgyi/bio 3.5.1

  • version: 0.36
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
chgyi/metaware_rna_denovo latest

  • version: *, 0.36
Latest release: about 7 years ago - 612 downloads - 2,095 dependencies
cjchen/tbtoolszone 2.0

  • version: 0.39
Latest release: about 3 years ago - 141 downloads - 789 dependencies
yuyanying/conda_alignments latest

  • version: *
Latest release: almost 3 years ago - 80 downloads - 63 dependencies
gfanz/trimmomatic latest

Trimmomatic is a sequence read trimming tool for Illumina technology.

  • version: 0.39
Latest release: about 3 years ago - 302 downloads - 6 dependencies
galclbl/epityping latest

A repository for the epityping tool container

  • version: 0.39
Latest release: over 3 years ago - 123 downloads - 123 dependencies
bokebiotech/qcpipe v6

  • version: 0.39
Latest release: almost 3 years ago - 481 downloads - 1,186 dependencies
mqmnd/trimmomatic amd-0.39

Trimmomatic installed on an ubuntu 20.04 base image. Trimmomatic repo also present in root dir

  • version: 0.39
Latest release: over 3 years ago - 87 downloads - 9 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: *, 0.38
Latest release: almost 3 years ago - 180 downloads - 1,036 dependencies
andrewsg/atac latest

  • version: 0.38
Latest release: over 2 years ago - 83 downloads - 381 dependencies
sagnikbanerjee15/trimmomatic 0.39

  • version: *
Latest release: over 3 years ago - 14 downloads - 136 dependencies
souckmi/fusioninspector 1.0

  • version: 0.36
Latest release: over 3 years ago - 161 downloads - 602 dependencies
jieliu4wustl/wustl hisat3n

  • version: 0.39
Latest release: over 2 years ago - 5,784 downloads - 1,124 dependencies
hoonbiolab/star-fusion v1.0

  • version: 0.36
Latest release: over 4 years ago - 31 downloads - 574 dependencies
cerebis/squeezemeta latest

  • version: 0.38
Latest release: about 3 years ago - 109 downloads - 386 dependencies
weishwu/squeezemeta 1.7.0

  • version: 0.38
Latest release: about 1 year ago - 282 downloads - 722 dependencies
dixonmd/nextflow_test latest

  • version: *
Latest release: over 3 years ago - 42 downloads - 221 dependencies
koki/urchin_workflow_bioconda 20250823

  • version: *
Latest release: 9 months ago - 253 downloads - 1,195 dependencies
mcrotti1/radseq latest

  • version: 0.38
Latest release: over 4 years ago - 68 downloads - 379 dependencies
pauffret/trimming-box 1.0

Docker image containing trimming tools requirements for SSDS DMC1 pipeline.

  • version: *
Latest release: over 3 years ago - 37 downloads - 111 dependencies
shaodongwei/metagenomics v2

  • version: 0.39
Latest release: almost 3 years ago - 91 downloads - 1,186 dependencies
flexxoble/temp2_sambamba v02

  • version: 0.36
Latest release: almost 3 years ago - 199 downloads - 545 dependencies
tbreina1/crispresso latest

CRISPResso (https://github.com/tonyreina/CRISPResso) This is an updated version of the original code

  • version: *, 0.33
Latest release: over 3 years ago - 65 downloads - 119 dependencies
danhumassmed/picard-trimmomatic 1.0.2

Software for Bioinformatics pipelines Picard & Trimmomatic

  • version: *
Latest release: over 1 year ago - 60 downloads - 184 dependencies
jdwiyanto/biobakery4 latest

  • version: 0.33
Latest release: about 3 years ago - 82 downloads - 832 dependencies
broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: *
Latest release: over 6 years ago - 26,725 downloads - 417 dependencies
nfcore/rnafusion 1.2.0

A Docker image for the nf-core/rnafusion pipeline.

  • version: 0.36
Latest release: almost 6 years ago - 28,413 downloads - 1,302 dependencies
biocontainers/trimmomatic v0.38dfsg-1-deb_cv1

  • version: 0.38
Latest release: over 6 years ago - 22,333 downloads - 206 dependencies
biocontainers/trinityrnaseq v2.6.6dfsg-6-deb_cv1

  • version: 0.38
Latest release: over 6 years ago - 8,008 downloads - 831 dependencies
maxfieldkelsey/snakesenescence latest

image for use in snakemake

  • version: 0.39
Latest release: over 3 years ago - 80 downloads - 494 dependencies
sangerbentleygroup/a1_bioinformatics_training 1.0.3

  • version: *
Latest release: about 3 years ago - 598 downloads - 1,240 dependencies
broadinstitute/viral-assemble latest

  • version: *
Latest release: about 6 years ago - 4,544 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: *
Latest release: about 6 years ago - 4,633 downloads - 431 dependencies
chgyi/trinity 2.8.4

  • version: 0.36
Latest release: about 7 years ago - 31 downloads - 795 dependencies
bactopia/assemble_genome 2.2.0

  • version: *
Latest release: over 3 years ago - 1,940 downloads - 230 dependencies
ashedpotatoes/clockwork-plus v0.12.5.3-CDC

CRyPTIC/IQBAL clockwork + reference genomes. More info: https://github.com/aofarrel/clockwork-wdl

  • version: 0.36
Latest release: over 1 year ago - 369,176 downloads - 1,500 dependencies
chriswyatt/trans_denovo_nonmodel-nf firsttry

  • version: *, 0.36
Latest release: over 6 years ago - 25 downloads - 139 dependencies
sbouslama/sb-nullarbor alpha1

  • version: *
Latest release: over 3 years ago - 151 downloads - 181 dependencies
doejgi/trinityrnaseq-wdl 2.15.1

  • version: 0.36
Latest release: about 3 years ago - 1,058 downloads - 980 dependencies
hoonbiolab/pepatac v1.1

  • version: *, 0.39
Latest release: over 4 years ago - 76 downloads - 1,213 dependencies
dhspence/docker-crispresso latest

  • version: 0.33
Latest release: over 8 years ago - 88 downloads - 588 dependencies
tercen/tracer_docker_operator_base 1.0.0

  • version: 0.36
Latest release: about 4 years ago - 134 downloads - 812 dependencies
wangyanmin/fastseq-pipline latest

  • version: 0.38
Latest release: almost 3 years ago - 109 downloads - 813 dependencies
vanessa/encode-demo-workflow latest

  • version: 0.38
Latest release: over 6 years ago - 140 downloads - 492 dependencies
omicsclass/metagenomics latest

  • version: 0.39
Latest release: over 2 years ago - 75 downloads - 1,493 dependencies
39dj29dl2d9l2/vec-ven 13

  • version: *
Latest release: over 2 years ago - 302 downloads - 747 dependencies
souckmi/starfusion 1.0

  • version: 0.36
Latest release: over 3 years ago - 41 downloads - 199 dependencies
xonq/funannotate latest

  • version: *, 0.36
Latest release: about 3 years ago - 87 downloads - 161 dependencies
kumalpha/kneaddata latest

  • version: 0.33
Latest release: over 3 years ago - 47 downloads - 39 dependencies
ericsalomaki/mirna 071723

  • version: 0.39
Latest release: almost 3 years ago - 36 downloads - 1,834 dependencies
amcooksey/nal_rna_seq_annotation_pipeline testing

  • version: 0.38
Latest release: over 3 years ago - 109 downloads - 865 dependencies
hbadrane/fungap version3

  • version: *, 0.36
Latest release: over 2 years ago - 109 downloads - 479 dependencies
tercen/tracer_summarize_docker_operator 0.1.0

  • version: 0.36
Latest release: about 4 years ago - 51 downloads - 760 dependencies
graefox/standard_qc_and_trim latest

Docker image for nextflow: standard QC and trim

  • version: 0.39
Latest release: over 3 years ago - 91 downloads - 895 dependencies
chgyi/trimmomatic 0.33

  • version: *
Latest release: over 6 years ago - 28 downloads - 172 dependencies
jolynnem/trimmomatic latest

  • version: 0.39
Latest release: over 3 years ago - 87 downloads - 262 dependencies
broadinstitute/viral-core 2.0.21

  • version: *
Latest release: about 6 years ago - 155,167 downloads - 419 dependencies
nfcore/bactmap dev

A Docker container for the bactmap pipeline.

  • version: *
Latest release: almost 7 years ago - 904 downloads - 223 dependencies
qdidiscoveryservices/crispresso2 2.1.3

  • version: *
Latest release: over 4 years ago - 546 downloads - 220 dependencies
mgibio/starfusion pre-1.11.c-fefaf71

  • version: 0.36
Latest release: over 3 years ago - 2,442 downloads - 574 dependencies
arrakistx/shapeware_dependencies 4

  • version: *
Latest release: over 2 years ago - 49 downloads - 336 dependencies
cimendes/splicing-pipelines-nf 3.1.ubuntu

  • version: *
Latest release: over 3 years ago - 309 downloads - 227 dependencies
broadinstitute/viral-classify 2.0.21.3

  • version: *
Latest release: about 6 years ago - 55 downloads - 423 dependencies