Ecosyste.ms: Docker

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Package Usage : maven : org.bdgenomics.utils:utils-io-spark2_2.11

Explore the latest package usage data for org.bdgenomics.utils:utils-io-spark2_2.11 in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 164
Total downloads: 74,566,921

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 0.2.8
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 0.2.15
Latest release: 11 months ago - 31,988,536 downloads - 912 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 0.2.15
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 0.2.15
Latest release: almost 2 years ago - 88,219 downloads - 1,101 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 0.2.15
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
vanallenlab/sv-pipeline filter_gt_029fa3b

  • version: 0.2.15
Latest release: over 1 year ago - 22,757 downloads - 1,231 dependencies
broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

  • version: 0.2.15
Latest release: about 2 years ago - 6,653 downloads - 752 dependencies
broadinstitute/terra-jupyter-gatk 8444561

  • version: 0.2.15
Latest release: over 4 years ago - 2,239 downloads - 3,913 dependencies
broadinstitute/fungal_gatk4 latest

  • version: 0.2.15
Latest release: almost 3 years ago - 16,447 downloads - 942 dependencies
nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

  • version: 0.2.15
Latest release: over 2 years ago - 1,052,189 downloads - 607 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 0.2.15
Latest release: over 4 years ago - 38,602 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 0.2.15
Latest release: over 1 year ago - 30,911 downloads - 1,038 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 0.2.15
Latest release: over 1 year ago - 21,820 downloads - 1,138 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 0.2.15
Latest release: almost 3 years ago - 12,626 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 0.2.15
Latest release: over 4 years ago - 10,089 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 0.2.15
Latest release: about 4 years ago - 7,556 downloads - 1,007 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 0.2.15
Latest release: over 1 year ago - 5,097 downloads - 1,140 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 0.2.15
Latest release: over 4 years ago - 4,290 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 0.2.15
Latest release: over 4 years ago - 3,337 downloads - 842 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 2,784 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 0.2.15
Latest release: over 1 year ago - 2,314 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 0.2.15
Latest release: over 3 years ago - 2,311 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 0.2.15
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 0.2.15
Latest release: almost 4 years ago - 2,222 downloads - 967 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 0.2.15
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 2,028 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 1,949 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 1,947 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 0.2.15
Latest release: about 3 years ago - 1,698 downloads - 957 dependencies
hoonbiolab/cellranger v1.0

  • version: 0.2.15
Latest release: almost 3 years ago - 919 downloads - 682 dependencies
intelliseqngs/task_vcf-prepare 1.0.3

  • version: 0.2.15
Latest release: over 1 year ago - 914 downloads - 1,038 dependencies
nfcore/exoseq dev

A docker container for the ExoSeq pipeline

  • version: 0.2.8
Latest release: almost 6 years ago - 1,158 downloads - 616 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 0.2.15
Latest release: over 4 years ago - 640 downloads - 842 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 0.2.15
Latest release: almost 3 years ago - 614 downloads - 946 dependencies
wiebekenza/pac latest

  • version: 0.2.8
Latest release: almost 2 years ago - 508 downloads - 412 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 0.2.15
Latest release: over 1 year ago - 593 downloads - 1,057 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 0.2.15
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 0.2.15
Latest release: almost 3 years ago - 362 downloads - 946 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 0.2.15
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 0.2.15
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 312 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 0.2.8
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 0.2.15
Latest release: over 1 year ago - 308 downloads - 1,040 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 0.2.15
Latest release: over 1 year ago - 304 downloads - 1,142 dependencies
hoonbiolab/align_dna v1.3

  • version: 0.2.15
Latest release: about 3 years ago - 275 downloads - 794 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 0.2.15
Latest release: over 1 year ago - 281 downloads - 1,038 dependencies
intelliseqngs/task_vcf-filter-align-errors 1.1.0

  • version: 0.2.8
Latest release: about 3 years ago - 260 downloads - 566 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 0.2.15, 0.2.8
Latest release: about 4 years ago - 212 downloads - 965 dependencies
intelliseqngs/astrolabe 1.0.0

  • version: 0.2.15
Latest release: about 4 years ago - 188 downloads - 1,097 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 0.2.15
Latest release: over 1 year ago - 184 downloads - 1,047 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 0.2.15
Latest release: about 3 years ago - 165 downloads - 1,057 dependencies
ctomlins/testuniv_update latest

  • version: 0.2.15
Latest release: almost 4 years ago - 153 downloads - 758 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 0.2.15
Latest release: over 1 year ago - 131 downloads - 1,081 dependencies
hoonbiolab/hl_base v1.2

  • version: 0.2.15
Latest release: about 2 years ago - 136 downloads - 873 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 0.2.15
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 0.2.15
Latest release: almost 2 years ago - 161 downloads - 1,118 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 0.2.8
Latest release: over 3 years ago - 123 downloads - 805 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 0.2.15
Latest release: about 1 year ago - 300 downloads - 1,059 dependencies
hoonbiolab/cnvkit v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 83 downloads - 817 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 0.2.15
Latest release: over 1 year ago - 79 downloads - 1,144 dependencies
luisas/gatk latest

  • version: 0.2.8
Latest release: over 6 years ago - 75 downloads - 374 dependencies
ctomlins/testuniv latest

  • version: 0.2.15
Latest release: almost 3 years ago - 69 downloads - 536 dependencies
intelliseqngs/task_vcf-anno-custom 1.0.1

  • version: 0.2.15
Latest release: about 4 years ago - 58 downloads - 1,025 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 0.2.15
Latest release: over 1 year ago - 331 downloads - 980 dependencies
hoonbiolab/cnvpytor v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 52 downloads - 807 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 0.2.15
Latest release: over 1 year ago - 58 downloads - 1,049 dependencies
luisas/gatk-haplotypecaller latest

  • version: 0.2.8
Latest release: over 6 years ago - 48 downloads - 734 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 0.2.8
Latest release: about 5 years ago - 44 downloads - 869 dependencies
hoonbiolab/kallisto v1.2

  • version: 0.2.15
Latest release: about 2 years ago - 43 downloads - 817 dependencies
hoonbiolab/mutect2 v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 42 downloads - 811 dependencies
hoonbiolab/gatk4 v1.1

  • version: 0.2.8, 0.2.15
Latest release: about 3 years ago - 44 downloads - 907 dependencies
hoonbiolab/amplicon_architect v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 39 downloads - 804 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 0.2.15
Latest release: over 4 years ago - 41 downloads - 866 dependencies
hoonbiolab/glass v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 37 downloads - 811 dependencies
hoonbiolab/fastqc v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 39 downloads - 799 dependencies
skoyamamd/analysis_base latest

neoterm/youcompleteme enabled ubuntu20.04

  • version: 0.2.15
Latest release: about 3 years ago - 34 downloads - 701 dependencies
hoonbiolab/multiqc v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 33 downloads - 819 dependencies
ctomlins/tellread_2022 latest

  • version: 0.2.15
Latest release: almost 2 years ago - 34 downloads - 711 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 36 downloads - 828 dependencies
hoonbiolab/delly v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 31 downloads - 800 dependencies
hoonbiolab/vcf-kit v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 29 downloads - 840 dependencies
hoonbiolab/gatk4_scnv v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 29 downloads - 811 dependencies
hoonbiolab/ascat v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 32 downloads - 792 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 0.2.15
Latest release: over 2 years ago - 31 downloads - 964 dependencies
hoonbiolab/mixcr v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 30 downloads - 710 dependencies
hoonbiolab/lohhla v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 30 downloads - 708 dependencies
hoonbiolab/imagemagick v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 29 downloads - 681 dependencies
hoonbiolab/pvacseq v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 29 downloads - 682 dependencies
hoonbiolab/ensembl_vep v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 28 downloads - 682 dependencies
hoonbiolab/optitype v1.1

  • version: 0.2.15, 0.2.8
Latest release: about 3 years ago - 28 downloads - 776 dependencies
hoonbiolab/titan v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 29 downloads - 754 dependencies
hoonbiolab/funcotate v1.1

  • version: 0.2.15
Latest release: about 3 years ago - 28 downloads - 777 dependencies