broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

broadinstitute/gatk 4.6.1.0

Official release repository for GATK versions 4.x

broadinstitute/terra-jupyter-aou 2.1.13

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

vanallenlab/sv-pipeline rlc_aou_evidencetable_fix

broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

broadinstitute/terra-jupyter-gatk 0.0.13

broadinstitute/fungal_gatk4 gatk4.5.0.0

nfcore/sarek 2.7.2

A Docker container for the nf-core/sarek pipeline

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/task_bam-filter-mismatch 1.4.1

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

intelliseqngs/task_bam-metrics 1.2.8

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_vcf-concat 1.0.4

intelliseqngs/gatk-4.1.9.0 1.0.0

intelliseqngs/task_vcf-anno-cosmic 2.1.6

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

hoonbiolab/cellranger v1.0

intelliseqngs/task_vcf-prepare 1.0.4

nfcore/exoseq dev

A docker container for the ExoSeq pipeline

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

wiebekenza/pac latest

intelliseqngs/task_bed-to-interval-list 1.1.5

qdidiscoveryservices/gatk-v2461_bwa_aws latest

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

vanallenlab/sv-pipeline-qc gnomad_v3_qc

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/resources longranger_v0.1

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

hoonbiolab/align_dna v1.3

intelliseqngs/task_pileup-merge 1.0.2

intelliseqngs/task_vcf-filter-align-errors 1.1.0

trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

intelliseqngs/astrolabe 1.0.0

intelliseqngs/bcl-to-fq 1.0.2

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

ctomlins/testuniv_update latest

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

hoonbiolab/hl_base v1.2

intelliseqngs/collect-hs-metrics 1.0.0

intelliseqngs/gatk-4.2.4.1 1.0.1

trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

intelliseqngs/resources-pgx-polygenic 1.2.4

hoonbiolab/cnvkit v1.1

intelliseqngs/task_bam-metrics-hg38 1.0.2

luisas/gatk latest

ctomlins/testuniv latest

intelliseqngs/task_vcf-anno-custom 1.0.1

doejgi/trinityrnaseq-wdl 2.15.1

hoonbiolab/cnvpytor v1.1

intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

luisas/gatk-haplotypecaller latest

nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

hoonbiolab/kallisto v1.2

hoonbiolab/mutect2 v1.1

hoonbiolab/gatk4 v1.1

hoonbiolab/amplicon_architect v1.1

dmiller15/gatk 4.1.7.0R0.1

hoonbiolab/glass v1.1

hoonbiolab/fastqc v1.1

skoyamamd/analysis_base latest

neoterm/youcompleteme enabled ubuntu20.04

hoonbiolab/multiqc v1.1

ctomlins/tellread_2022 latest

hoonbiolab/variantannotation_r v1.1

hoonbiolab/delly v1.1

hoonbiolab/vcf-kit v1.1

hoonbiolab/gatk4_scnv v1.1

hoonbiolab/ascat v1.1

intelliseqngs/pharmcat-resources 1.1.0

hoonbiolab/mixcr v1.1

hoonbiolab/lohhla v1.1

hoonbiolab/imagemagick v1.1

hoonbiolab/pvacseq v1.1