Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

skchronicles/genome-seek : latest

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

Latest release: almost 2 years ago - 79 downloads - 1,367 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.2
BH 1.81.0-1
BSgenome 1.66.3
Biobase 2.58.0
BiocFileCache 2.6.1
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.20
BiocParallel 1.32.6
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DNAcopy 1.72.3
DelayedArray 0.24.0
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.1
GenomicFeatures 1.50.4
GenomicRanges 1.50.2
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.3
Matrix 1.5-1
MatrixGenerics 1.10.0
MatrixModels 0.5-1
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
Rcpp 1.0.10
RcppEigen 0.3.3.9.3
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.2
SparseM 1.81
SummarizedExperiment 1.28.0
VariantAnnotation 1.44.1
XML 3.99-0.14
XVector 0.38.0
abind 1.4-5
askpass 1.1
backports 1.4.1
base64enc 0.1-3
base 4.2.3
biomaRt 2.54.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.4
bslib 0.4.2
cachem 1.0.7
callr 3.7.3
car 3.1-2
carData 3.0-5
cellranger 1.1.0
class 7.3-21
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
commonmark 1.9.0
compiler 4.2.3
conflicted 1.2.0
copynumber 1.38.0
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.2
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
downlit 0.4.2
dplyr 1.1.1
dtplyr 1.3.1
edgeR 3.40.2
ellipsis 0.3.2
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
filelock 1.0.2
fontawesome 0.5.1
forcats 1.0.0
foreign 0.8-82
formatR 1.14
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
generics 0.1.3
gert 1.9.2
getopt 1.20.3
ggplot2 3.4.2
ggpubr 0.6.0
ggrepel 0.9.3
ggsci 3.0.0
ggsignif 0.6.4
gh 1.4.0
gitcreds 0.1.2
glue 1.6.2
googledrive 2.1.0
googlesheets4 1.1.0
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gridExtra 2.3
gtable 0.3.3
haven 2.5.2
highr 0.10
hms 1.1.3
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.9
httr2 0.2.2
httr 1.4.5
ids 1.0.1
ini 0.3.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.54.2
lme4 1.1-32
locfit 1.5-9.7
lubridate 1.9.2
maftools 2.14.0
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.3
mgcv 1.8-42
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
modelr 0.1.11
munsell 0.5.0
nlme 3.1-162
nloptr 2.0.3
nnet 7.3-18
numDeriv 2016.8-1.1
openssl 2.0.6
optparse 1.7.3
org.testing.db 0.1
parallel 4.2.3
pbkrtest 0.5.2
pillar 1.9.0
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
png 0.1-8
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.1
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.5
purrr 1.0.1
quantreg 5.95
ragg 1.2.5
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.2
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
restfulr 0.0.15
rjson 0.2.21
rlang 1.1.0
rmarkdown 2.21
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstatix 0.7.2
rstudioapi 0.14
rtracklayer 1.58.0
rversions 2.1.2
rvest 1.0.3
sass 0.4.5
scales 1.2.1
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.7.4
snow 0.4-4
sourcetools 0.1.7-1
spatial 7.3-15
splines 4.2.3
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-3
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.7
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 2.0.0
timechange 0.2.0
tinytex 0.45
tools 4.2.3
translations 4.2.3
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.2.3
uuid 1.1-0
vctrs 0.6.1
viridisLite 0.4.1
vroom 1.6.1
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.38
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.3.0
zlibbioc 1.44.0

bash 5.1.16