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Package Usage : maven : org.broadinstitute.gatk:gatk-tools-public

Explore the latest package usage data for org.broadinstitute.gatk:gatk-tools-public in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 38
Total downloads: 43,587,131

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.1.1

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 3.5, 3.7-SNAPSHOT, 3.5-SNAPSHOT
Latest release: about 9 years ago - 41,257,317 downloads - 951 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 3.8-1
Latest release: about 7 years ago - 1,496,392 downloads - 498 dependencies
broadinstitute/broadmutationcalling_beta latest

Broad Mutation Calling BETA Repository

  • version: 3.5
Latest release: about 8 years ago - 1,036,112 downloads - 449 dependencies
broadinstitute/viral-core 2.0.21

  • version: 3.8-1
Latest release: about 5 years ago - 154,979 downloads - 419 dependencies
nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

  • version: 3.5
Latest release: 4 months ago - 48,015 downloads - 738 dependencies
dhspence/docker-walker latest

Haley's GATK

  • version: 3.6
Latest release: over 6 years ago - 7,392 downloads - 541 dependencies
broadinstitute/viral-assemble latest

  • version: 3.8-1
Latest release: about 5 years ago - 4,496 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 3.8-1
Latest release: about 5 years ago - 4,463 downloads - 431 dependencies
dhspence/docker-amplicon-readcount latest

GATK plus custom annotation script

  • version: 3.6
Latest release: almost 8 years ago - 3,619 downloads - 716 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 3.5
Latest release: over 8 years ago - 839 downloads - 1,368 dependencies
biocontainers/gatk v3.4_cv1

  • version: 3.4
Latest release: over 7 years ago - 1,032 downloads - 1,201 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 3.8-1
Latest release: almost 5 years ago - 285 downloads - 965 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 3.3
Latest release: over 7 years ago - 395 downloads - 865 dependencies
chgyi/bio 3.5.1

  • version: 3.8
Latest release: almost 7 years ago - 531 downloads - 1,077 dependencies
broadinstitute/pcawg_full 7

  • version: 3.3
Latest release: almost 8 years ago - 303 downloads - 889 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 3.8, 3.8-1
Latest release: about 4 years ago - 178 downloads - 805 dependencies
chgyi/gatk3.8 latest

  • version: 3.8
Latest release: about 6 years ago - 92 downloads - 296 dependencies
kentwait/gatk latest

Dockerized GATK for genomics analysis

  • version: 3.7
Latest release: over 8 years ago - 82 downloads - 371 dependencies
dhspence/docker-concordance ngv3-exome-GRCh37

GATK, Picard, and dbSNP files for tumor/normal concordance checking

  • version: 3.6
Latest release: almost 8 years ago - 97 downloads - 1,012 dependencies
dhspence/docker-cle-cwl latest

from mgibio with cwl in there too

  • version: 3.6
Latest release: almost 8 years ago - 139 downloads - 1,402 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 3.9-SNAPSHOT
Latest release: over 7 years ago - 53 downloads - 1,213 dependencies
crukmi/target-snakemake-docker 3.2.2

  • version: 3.5
Latest release: about 3 years ago - 129 downloads - 1,148 dependencies
jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

  • version: 3.8-1
Latest release: over 2 years ago - 65 downloads - 633 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 3.5
Latest release: over 2 years ago - 190 downloads - 586 dependencies
broadinstitute/viral-classify 2.0.21.3

  • version: 3.8-1
Latest release: about 5 years ago - 34 downloads - 423 dependencies
ctomlins/testuniv_link latest

  • version: 3.8-1
Latest release: over 4 years ago - 17 downloads - 118 dependencies
ctomlins/testuniv_sort latest

  • version: 3.8-1
Latest release: over 4 years ago - 17 downloads - 184 dependencies
nysdohwadsbicore/wadsworth_mtb_pipeline_locked 5.0.2

  • version: 3.3
Latest release: over 1 year ago - 59 downloads - 544 dependencies
gru4/scan2workinghg38 latest

  • version: 3.8-1
Latest release: about 2 years ago - 64 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 3.8-1
Latest release: about 2 years ago - 79 downloads - 777 dependencies
hremon331046/neoantigen-vaccine-pipeline nf-pipeline

  • version: 3.7
Latest release: about 1 year ago - 193 downloads - 436 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 3.8-1
Latest release: 9 months ago - 266 downloads - 1,367 dependencies
zjnolen/angsd-snakemake-pipeline 0.1

  • version: 3.8-1
Latest release: about 2 years ago - 126 downloads - 643 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 3.8-1
Latest release: over 2 years ago - 266 downloads - 1,367 dependencies
kobedr/bissnp latest

  • version: 3.8-1
Latest release: over 1 year ago - 39 downloads - 545 dependencies
archieyoung/giraffe_map_realign 0.5.0

vg giraffe mapping and relalignment tools

  • version: 3.8-1
Latest release: almost 2 years ago - 92 downloads - 499 dependencies
jcbn/dest_freeze2.6.1 latest

  • version: 3.8-1
Latest release: almost 2 years ago - 27 downloads - 633 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 3.8-1
Latest release: about 2 years ago - 146 downloads - 1,722 dependencies