Ecosyste.ms: Docker

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Package Usage : maven : org.broadinstitute.gatk:gatk-engine

Explore the latest package usage data for org.broadinstitute.gatk:gatk-engine in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 38
Total downloads: 43,587,131

More details on packages.ecosyste.ms - JSON

broadinstitute/genomes-in-the-cloud 2.4.0-1501007820

Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.

  • version: 3.5, 3.7-SNAPSHOT, 3.5-SNAPSHOT
Latest release: over 7 years ago - 40,948,348 downloads - 951 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 3.8-1
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
broadinstitute/broadmutationcalling_beta latest

Broad Mutation Calling BETA Repository

  • version: 3.5
Latest release: over 7 years ago - 1,035,904 downloads - 449 dependencies
broadinstitute/viral-core latest

  • version: 3.8-1
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 3.5
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
dhspence/docker-walker latest

Haley's GATK

  • version: 3.6
Latest release: over 5 years ago - 7,359 downloads - 541 dependencies
broadinstitute/viral-assemble latest

  • version: 3.8-1
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 3.8-1
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
dhspence/docker-amplicon-readcount latest

GATK plus custom annotation script

  • version: 3.6
Latest release: about 7 years ago - 3,595 downloads - 716 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 3.5
Latest release: over 7 years ago - 780 downloads - 1,368 dependencies
biocontainers/gatk v3.4_cv1

  • version: 3.4
Latest release: over 6 years ago - 896 downloads - 1,201 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 3.8-1
Latest release: about 4 years ago - 212 downloads - 965 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 3.3
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
chgyi/bio 3.5.1

  • version: 3.8
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
broadinstitute/pcawg_full 7

  • version: 3.3
Latest release: about 7 years ago - 146 downloads - 889 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 3.8, 3.8-1
Latest release: over 3 years ago - 123 downloads - 805 dependencies
chgyi/gatk3.8 latest

  • version: 3.8
Latest release: over 5 years ago - 84 downloads - 296 dependencies
kentwait/gatk latest

Dockerized GATK for genomics analysis

  • version: 3.7
Latest release: over 7 years ago - 68 downloads - 371 dependencies
dhspence/docker-concordance ngv3-exome-GRCh37

GATK, Picard, and dbSNP files for tumor/normal concordance checking

  • version: 3.6
Latest release: about 7 years ago - 38 downloads - 1,012 dependencies
dhspence/docker-cle-cwl latest

from mgibio with cwl in there too

  • version: 3.6
Latest release: about 7 years ago - 33 downloads - 1,402 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 3.9-SNAPSHOT
Latest release: almost 7 years ago - 23 downloads - 1,213 dependencies
crukmi/target-snakemake-docker latest

  • version: 3.5
Latest release: over 2 years ago - 21 downloads - 1,148 dependencies
jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

  • version: 3.8-1
Latest release: over 1 year ago - 29 downloads - 633 dependencies
hoonbiolab/ccle-cga v0.2

  • version: 3.5
Latest release: almost 2 years ago - 72 downloads - 586 dependencies
broadinstitute/viral-classify 2.0.21.3

  • version: 3.8-1
Latest release: over 4 years ago - 12 downloads - 423 dependencies
ctomlins/testuniv_link latest

  • version: 3.8-1
Latest release: about 4 years ago - 10 downloads - 118 dependencies
ctomlins/testuniv_sort latest

  • version: 3.8-1
Latest release: about 4 years ago - 9 downloads - 184 dependencies
nysdohwadsbicore/wadsworth_mtb_pipeline_locked 5.0.2

  • version: 3.3
Latest release: 11 months ago - 8 downloads - 544 dependencies
gru4/scan2workinghg38 latest

  • version: 3.8-1
Latest release: over 1 year ago - 59 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 3.8-1
Latest release: over 1 year ago - 55 downloads - 777 dependencies
hremon331046/neoantigen-vaccine-pipeline d0.4.3-el-cut-off-99

  • version: 3.7
Latest release: 12 months ago - 96 downloads - 436 dependencies
skchronicles/genome-seek_trim_map latest

Official docker image for trimming and alignment with genome-seek

  • version: 3.8-1
Latest release: over 1 year ago - 36 downloads - 1,367 dependencies
zjnolen/angsd-snakemake-pipeline 0.1

  • version: 3.8-1
Latest release: over 1 year ago - 22 downloads - 643 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 3.8-1
Latest release: over 1 year ago - 79 downloads - 1,367 dependencies
kobedr/bissnp latest

  • version: 3.8-1
Latest release: about 1 year ago - 15 downloads - 545 dependencies
archieyoung/giraffe_map_realign 0.5.0

vg giraffe mapping and relalignment tools

  • version: 3.8-1
Latest release: over 1 year ago - 14 downloads - 499 dependencies
jcbn/dest_freeze2.6.1 latest

  • version: 3.8-1
Latest release: about 1 year ago - 14 downloads - 633 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 3.8-1
Latest release: over 1 year ago - 14 downloads - 1,722 dependencies