Ecosyste.ms: Docker
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Package Usage : maven : org.broadinstitute.gatk:gatk-engine
Explore the latest package usage data for org.broadinstitute.gatk:gatk-engine in the maven ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 38
Total downloads: 43,587,131
More details on packages.ecosyste.ms - JSON
broadinstitute/genomes-in-the-cloud 2.4.0-1501007820
Genomes-in-the-cloud is a genomic analysis pipeline project developed by the Broad Institute.
- version: 3.5, 3.7-SNAPSHOT, 3.5-SNAPSHOT
broadinstitute/gatk3 3.8-1
Official release repository for GATK versions 3.x
- version: 3.8-1
broadinstitute/broadmutationcalling_beta latest
Broad Mutation Calling BETA Repository
- version: 3.5
broadinstitute/viral-core latest
- version: 3.8-1
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 3.5
dhspence/docker-walker latest
Haley's GATK
- version: 3.6
broadinstitute/viral-assemble latest
- version: 3.8-1
broadinstitute/viral-phylo 2.0.21.5
- version: 3.8-1
dhspence/docker-amplicon-readcount latest
GATK plus custom annotation script
- version: 3.6
broadinstitute/pcawg_public latest
pcawg_public
- version: 3.5
biocontainers/gatk v3.4_cv1
- version: 3.4
trust1/gatk version0.4.1
Variant Calling Pipeline based on GATK image
- version: 3.8-1
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor
pcawg_broad_wgs_variant_callers
- version: 3.3
broadinstitute/pcawg_full 7
- version: 3.3
trust1/ubuntu OMGv001
Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline
- version: 3.8, 3.8-1
chgyi/gatk3.8 latest
- version: 3.8
kentwait/gatk latest
Dockerized GATK for genomics analysis
- version: 3.7
dhspence/docker-concordance ngv3-exome-GRCh37
GATK, Picard, and dbSNP files for tumor/normal concordance checking
- version: 3.6
dhspence/docker-cle-cwl latest
from mgibio with cwl in there too
- version: 3.6
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5
- version: 3.9-SNAPSHOT
crukmi/target-snakemake-docker latest
- version: 3.5
jcbn/dest_v2.5 latest
Updated version of the DEST pipeline
- version: 3.8-1
hoonbiolab/ccle-cga v0.2
- version: 3.5
broadinstitute/viral-classify 2.0.21.3
- version: 3.8-1
ctomlins/testuniv_link latest
- version: 3.8-1
ctomlins/testuniv_sort latest
- version: 3.8-1
nysdohwadsbicore/wadsworth_mtb_pipeline_locked 5.0.2
- version: 3.3
gru4/scan2workinghg38 latest
- version: 3.8-1
gru4/scan2fixedhg38 latest
- version: 3.8-1
hremon331046/neoantigen-vaccine-pipeline d0.4.3-el-cut-off-99
- version: 3.7
skchronicles/genome-seek_trim_map latest
Official docker image for trimming and alignment with genome-seek
- version: 3.8-1
zjnolen/angsd-snakemake-pipeline 0.1
- version: 3.8-1
skchronicles/genome-seek v0.1.0
Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek
- version: 3.8-1
kobedr/bissnp latest
- version: 3.8-1
archieyoung/giraffe_map_realign 0.5.0
vg giraffe mapping and relalignment tools
- version: 3.8-1
jcbn/dest_freeze2.6.1 latest
- version: 3.8-1
skchronicles/genome-seek_hla v0.1.0
Official docker image for HLA typing steps in genome-seek
- version: 3.8-1