mattjmeier/r-odaf-hc-base : latest

Latest release: over 2 years ago - 20 downloads - 598 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.78.0-0
BSgenome 1.66.1
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.19
BiocParallel 1.32.0
Biostrings 2.66.0
Cairo 1.6-0
ComplexHeatmap 2.14.0
DBI 1.1.3
DESeq2 1.38.0
DEoptimR 1.0-11
DO.db 2.9
DOSE 3.24.0
DT 0.26
DelayedArray 0.24.0
DiagrammeR 1.0.9
DiagrammeRsvg 0.1
EBSeq 1.38.0
GGally 2.1.2
GO.db 3.16.0
GOSemSim 2.24.0
GenomeInfoDb 1.34.1
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicFeatures 1.50.2
GenomicFiles 1.34.0
GenomicRanges 1.50.0
GetoptLong 1.0.5
GlobalOptions 0.1.2
HDO.db 0.99.1
IRanges 2.32.0
ISOcodes 2022.09.29
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-3
MatrixGenerics 1.10.0
QuasR 1.38.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RSQLite 2.2.20
Rbowtie 1.38.0
Rcpp 1.0.9
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.0
SQUAREM 2021.1
ShortRead 1.56.0
SnowballC 0.7.0
SummarizedExperiment 1.28.0
UpSetR 1.4.0
V8 4.2.2
VariantAnnotation 1.44.0
XML 3.99-0.13
XVector 0.38.0
affy 1.76.0
affyio 1.68.0
annotate 1.76.0
ape 5.6-2
aplot 0.1.9
ashr 2.2-54
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
blockmodeling 1.1.4
brew 1.0-8
brio 1.1.3
broom 1.0.2
bslib 0.4.2
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
circlize 0.4.15
cli 3.5.0
clipr 0.8.0
clue 0.3-63
cluster 2.1.4
clusterProfiler 4.6.0
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.2
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
crosstool 0.0.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
dbplyr 2.2.1
deldir 1.0-6
dendextend 1.16.0
dendsort 0.3.4
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
doParallel 1.0.17
dotCall64 1.0-2
downlit 0.4.2
downloader 0.4
dplyr 1.0.10
dtplyr 1.2.2
edgeR 3.40.0
ellipsis 0.3.2
enrichplot 1.18.0
etrunct 0.1
evaluate 0.19
fansi 1.0.3
farver 2.1.1
fastcluster 1.2.3
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.24.0
fields 14.1
filelock 1.0.2
flextable 0.8.3
fontawesome 0.4.0
forcats 0.5.2
foreach 1.5.2
formatR 1.13
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.1
gdtools 0.2.4
genefilter 1.80.0
geneplotter 1.76.0
generics 0.1.3
gert 1.5.0
ggforce 0.4.1
ggfun 0.0.9
ggnewscale 0.4.8
ggplot2 3.4.0
ggplotify 0.1.0
ggraph 2.1.0
ggrepel 0.9.2
ggridges 0.5.4
ggtree 3.6.0
ggupset 0.3.0
gh 1.3.1
gitcreds 0.1.2
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
gplots 3.1.3
grDevices 4.2.2
graphics 4.2.2
graphlayouts 0.8.4
grid 4.2.2
gridExtra 2.3
gridGraphics 0.5-1
gson 0.0.9
gtable 0.3.1
gtools 3.9.4
haven 2.5.1
heatmap3 1.1.9
here 1.0.1
hexbin 1.28.2
highr 0.10
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.6.0
httpuv 1.6.7
httr 1.4.4
hunspell 3.0.2
hwriter 1.3.2.1
ids 1.0.1
igraph 1.3.5
influenceR 0.1.0.1
ini 0.3.1
interp 1.1-3
invgamma 1.1
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
janeaustenr 1.0.0
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
kableExtra 1.3.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
latticeExtra 0.6-30
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.54.0
locfit 1.5-9.7
lubridate 1.9.0
magrittr 2.0.3
maps 3.4.1
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
mixsqp 0.3-48
modelr 0.1.10
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-161
officer 0.5.1
openssl 2.0.5
openxlsx 4.2.5.1
org.Hs.eg.db 3.16.0
org.Mm.eg.db 3.16.0
org.testing.db 0.1
parallel 4.2.2
patchwork 1.1.2
pcaPP 2.0-3
pheatmap 1.0.12
pillar 1.8.1
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
praise 1.0.0
preprocessCore 1.60.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.2
purrr 1.0.0
qvalue 2.30.0
ragg 1.2.4
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
reshape 0.8.9
restfulr 0.0.15
rgexf 0.16.2
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.19
robustbase 0.95-0
roxygen2 7.2.3
rprojroot 2.0.3
rrcov 1.7-2
rstudioapi 0.14
rsvg 2.4.0
rtracklayer 1.58.0
rvcheck 0.2.1
rversions 2.1.2
rvest 1.0.3
sass 0.4.4
scales 1.2.1
scatterpie 0.1.8
selectr 0.4-2
servr 0.25
sessioninfo 1.2.2
sfsmisc 1.1-14
shadowtext 0.1.2
shape 1.4.6
shiny 1.7.4
snow 0.4-4
sourcetools 0.1.7
spam 2.9-1
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stopwords 2.3
stringi 1.7.8
stringr 1.5.0
survival 3.4-0
svglite 2.1.0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
textshaping 0.3.6
tibble 3.1.8
tidygraph 1.2.2
tidyr 1.2.1
tidyselect 1.2.0
tidytext 0.4.0
tidytree 0.4.2
tidyverse 1.3.2
timechange 0.1.1
tinytex 0.43
tokenizers 0.3.0
tools 4.2.2
translations 4.2.2
treeio 1.22.0
truncnorm 1.0-8
tweenr 2.0.2
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.2
uuid 1.1-0
vctrs 0.5.1
viridis 0.6.2
viridisLite 0.4.1
visNetwork 2.1.2
vroom 1.6.0
vsn 3.66.0
vtree 5.6.5
waldo 0.4.0
webshot 0.5.4
whisker 0.4.1
withr 2.5.0
xfun 0.36
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.6
yulab.utils 0.0.6
zip 2.2.2
zlibbioc 1.44.0

bash 5.1.4
python 3.10.8
python 3.11.0
python 3.9.2

gradle-wrapper:gradle-wrapper 2.10

@grpc/grpc-js 1.1.8
@grpc/proto-loader 0.5.5
@protobufjs/aspromise 1.1.2
@protobufjs/base64 1.1.2
@protobufjs/codegen 2.0.4
@protobufjs/eventemitter 1.1.0
@protobufjs/fetch 1.1.0
@protobufjs/float 1.0.2
@protobufjs/inquire 1.1.0
@protobufjs/path 1.1.2
@protobufjs/pool 1.1.0
@protobufjs/utf8 1.1.0
@types/long 4.0.1
@types/node 12.19.3
abort-controller 3.0.0
agent-base 6.0.2
ansi-styles 4.3.0
arrify 2.0.1
async 1.5.2
base64-js 1.3.1
bignumber.js 9.0.1
bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
buffer-equal-constant-time 1.0.1
casperjs 1.1.0-beta5
color-convert 2.0.1
color-name 1.1.4
decamelize 1.2.0
ecdsa-sig-formatter 1.0.11
emoji-regex 8.0.0
event-target-shim 5.0.1
extend 3.0.2
fast-text-encoding 1.0.3
find-up 4.1.0
gaxios 4.0.1
gcp-metadata 4.2.1
get-caller-file 2.0.5
google-auth-library 6.1.3
google-p12-pem 3.0.3
google-protobuf 3.13.0
grpc-examples-xds 0.1.0
grpc-examples 0.1.0
gtoken 5.0.5
https-proxy-agent 5.0.0
is-stream 2.0.0
json-bigint 1.0.0
jwa 2.0.0
jws 4.0.0
locate-path 5.0.0
lodash.camelcase 4.3.0
lodash 4.17.20
long 4.0.0
lru-cache 6.0.0
mime 2.4.6
minimist 1.2.5
ms 2.1.2
node-fetch 2.6.1
node-forge 0.10.0
p-limit 2.3.0
p-locate 4.1.0
p-try 2.2.0
path-exists 4.0.0
protobufjs 6.10.1
require-directory 2.1.1
require-main-filename 2.0.0
safe-buffer 5.1.2
set-blocking 2.0.0
which-module 2.0.0
y18n 4.0.3
yargs-parser 18.1.3

ConfigArgParse 1.5.3
GitPython 3.1.30
Jinja2 3.1.2
Markdown 3.4.1
MarkupSafe 2.1.1
Pillow 9.2.0
PuLP 2.7.0
PyNaCl 1.5.0
PySocks 1.7.1
PyYAML 6.0
Pygments 2.14.0
aioeasywebdav 2.4.0
aiohttp 3.8.3
aiosignal 1.3.1
amply 0.1.5
appdirs 1.4.4
argcomplete 2.0.0
async-timeout 4.0.2
attmap 0.13.2
attrs 22.2.0
backports.functools-lru-cache 1.6.4
bcrypt 3.2.2
boto3 1.26.44
botocore 1.29.44
brotlipy 0.7.0
cachetools 5.2.0
certifi 2022.12.7
cffi 1.15.1
charset-normalizer 2.0.4
charset-normalizer 2.1.1
click 8.1.3
colorama 0.4.6
coloredlogs 15.0.1
colormath 3.0.0
commonmark 0.9.1
conda-content-trust 0.1.3
conda-package-handling 1.9.0
conda 22.11.1
connection-pool 0.0.3
contourpy 1.0.6
coverage 5.5
cryptography 38.0.1
cryptography 39.0.0
cycler 0.11.0
dataclasses 0.8
datrie 0.8.2
defusedxml 0.7.1
docutils 0.19
dpath 2.1.3
dropbox 11.36.0
exceptiongroup 1.1.0
fastjsonschema 2.16.2
filechunkio 1.8
filelock 3.9.0
fonttools 4.38.0
frozenlist 1.3.3
ftputil 5.0.4
future 0.18.2
gitdb 4.0.10
google-api-core 2.11.0
google-api-python-client 2.71.0
google-auth-httplib2 0.1.0
google-auth 2.15.0
google-cloud-core 2.3.2
google-cloud-storage 2.7.0
google-crc32c 1.1.2
google-resumable-media 2.4.0
googleapis-common-protos 1.57.1
grpcio 1.51.1
httplib2 0.21.0
humanfriendly 10.0
idna 3.4
importlib-metadata 3.3.0
importlib-metadata 6.0.0
importlib-resources 5.10.2
iniconfig 1.1.1
jmespath 1.0.1
jsonschema 4.17.3
jupyter_core 5.1.2
kiwisolver 1.4.4
libmambapy 1.1.0
logmuse 0.2.6
lzstring 1.0.4
mamba 1.1.0
matplotlib 3.6.2
mercurial 5.6.1
multidict 6.0.4
multiqc 1.12
munkres 1.1.4
nbformat 5.7.1
networkx 2.8.8
numpy 1.24.1
oauth2client 4.1.3
packaging 22.0
pandas 1.5.2
paramiko 2.12.0
peppy 0.35.3
pip 22.3.1
pkgutil_resolve_name 1.3.10
plac 1.3.5
platformdirs 2.6.2
pluggy 1.0.0
ply 3.11
prettytable 3.5.0
protobuf 4.21.12
psutil 5.9.4
pyOpenSSL 22.0.0
pyOpenSSL 23.0.0
pyasn1-modules 0.2.7
pyasn1 0.4.8
pycosat 0.6.4
pycparser 2.21
pyparsing 3.0.9
pyrsistent 0.19.3
pysftp 0.2.9
pytest 7.2.0
python-dateutil 2.8.2
python-irodsclient 1.1.5
pytz 2022.7
pyu2f 0.1.5
requests 2.28.1
reretry 0.11.8
rich 13.0.0
rsa 4.9
ruamel.yaml.clib 0.2.6
ruamel.yaml 0.17.21
s3transfer 0.6.0
setuptools-scm 7.1.0
setuptools 65.5.0
setuptools 65.6.3
simplejson 3.18.1
six 1.16.0
slacker 0.14.0
smart-open 6.3.0
smmap 3.0.5
snakemake 7.19.1
spectra 0.0.11
stone 3.3.1
stopit 1.1.2
tabulate 0.9.0
throttler 1.2.1
toml 0.10.2
tomli 2.0.1
toolz 0.12.0
toposort 1.7
tqdm 4.64.1
traitlets 5.8.0
typing_extensions 4.4.0
ubiquerg 0.6.2
uritemplate 4.1.1
urllib3 1.26.13
veracitools 0.1.3
wcwidth 0.2.5
wheel 0.37.1
wheel 0.38.4
wrapt 1.14.1
xmltodict 0.13.0
yarl 1.8.2
yq 3.1.0
yte 1.5.1
zipp 3.11.0

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mattjmeier/r-odaf-hc-base : latest

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