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markataylor/r_yufree : v1.0.0
Ubuntu 22.04.1 LTS
Latest release: almost 2 years ago - 14 downloads - 1,514 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.60.0
- AnnotationFilter 1.22.0
- Autotuner 1.3.0
- BH 1.78.0-0
- BatchCorrMetabolomics 0.1.14
- Biobase 2.58.0
- BiocBaseUtils 1.0.0
- BiocFileCache 2.6.0
- BiocGenerics 0.44.0
- BiocIO 1.8.0
- BiocManager 1.30.19
- BiocParallel 1.32.1
- BiocVersion 3.16.0
- Biostrings 2.66.0
- CAMERA 1.54.0
- ChemmineR 3.50.0
- ChemoSpec 6.1.4
- ChemoSpecUtils 1.0.0
- ChemometricsWithR 0.1.13
- CompoundDb 1.2.0
- DBI 1.1.3
- DEoptimR 1.0-11
- DT 0.26
- DelayedArray 0.24.0
- DelayedMatrixStats 1.20.0
- DiagrammeR 1.0.9
- FDb.InfiniumMethylation.hg19 2.2.0
- Formula 1.2-4
- GEOquery 2.66.0
- GO.db 3.16.0
- GSEABase 1.60.0
- GenomeInfoDb 1.34.3
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.0
- GenomicFeatures 1.50.2
- GenomicRanges 1.50.1
- GlobalAncova 4.16.0
- HDF5Array 1.26.0
- Hmisc 4.7-1
- IPO 1.24.0
- IRanges 2.32.0
- InterpretMSSpectrum 1.3.3
- JADE 2.0-3
- KEGGREST 1.38.0
- KEGGgraph 1.58.0
- KernSmooth 2.23-20
- Lahman 10.0-1
- MALDIquant 1.22
- MASS 7.3-58.1
- MSPrep 1.5.1
- MSnbase 2.24.0
- MassSpecWavelet 1.64.0
- Matrix 1.5-1
- MatrixGenerics 1.10.0
- MatrixModels 0.5-1
- MetDIA 1.03
- MetabNet 0.99.1
- MetaboAnnotation 1.2.0
- MetaboCoreUtils 1.6.0
- ModelMetrics 1.2.2.2
- MsBackendMgf 1.6.0
- MsBackendMsp 1.2.0
- MsCoreUtils 1.10.0
- MsFeatures 1.6.0
- MultiAssayExperiment 1.24.0
- ProtGenerics 1.30.0
- QFeatures 1.8.0
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R2HTML 2.3.3
- R6 2.5.1
- RAMClustR 1.2.4
- RANN 2.6.1
- RBGL 1.74.0
- hms 1.1.2
- RColorBrewer 1.1-3
- RCurl 1.98-1.9
- RJSONIO 1.3-1.6
- RMariaDB 1.2.2
- ROCS 1.3
- RPostgres 1.4.4
- RSQLite 2.2.18
- RSpectra 0.16-1
- Rcpp 1.0.9
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- Rdisop 1.58.0
- Rgraphviz 2.42.0
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- Rhtslib 2.0.0
- Rita 1.2.0
- Rsamtools 2.14.0
- S4Vectors 0.36.0
- SQUAREM 2021.1
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- SparseM 1.81
- Spectra 1.8.0
- SummarizedExperiment 1.28.0
- TH.data 1.1-1
- TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
- UpSetR 1.4.0
- VGAM 1.1-7
- VIM 6.2.2
- WGCNA 1.71
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- animation 2.7
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- arrow 10.0.0
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- ubuntu/policykit-1 0.105-33
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- ubuntu/poppler-data 0.4.11-1
- ubuntu/preview-latex-style 12.2-1ubuntu1
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- ubuntu/psmisc 23.4-2build3
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- ubuntu/python-pkg-resources 44.1.1-1.2
- ubuntu/python-setuptools 44.1.1-1.2
- ubuntu/python2-minimal 2.7.18-3
- ubuntu/python2.7-minimal 2.7.18-13ubuntu1.1
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- ubuntu/python3.10-minimal 3.10.6-1~22.04.2
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- ubuntu/rasqal-utils 0.9.33-0.2ubuntu1
- ubuntu/readline-common 8.1.2-1
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- ubuntu/rstudio-server 2022.07.2 576
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- ubuntu/tar 1.34 dfsg-1build3
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- ubuntu/tcl8.6 8.6.12 dfsg-1build1
- ubuntu/tex-common 6.17
- ubuntu/texinfo 6.8-4build1
- ubuntu/texlive-local 2016-1~9
- ubuntu/tk8.6-dev 8.6.12-1build1
- ubuntu/tk8.6 8.6.12-1build1
- ubuntu/tzdata 2022g-0ubuntu0.22.04.1
- ubuntu/ubuntu-keyring 2021.03.26
- ubuntu/ucf 3.0043
- ubuntu/unixodbc-common 2.3.9-5
- ubuntu/unixodbc-dev 2.3.9-5
- ubuntu/unzip 6.0-26ubuntu3.1
- ubuntu/usrmerge 25ubuntu2
- ubuntu/util-linux 2.37.2-4ubuntu3
- ubuntu/uuid-dev 2.37.2-4ubuntu3
- ubuntu/vim-common 2:8.2.3995-1ubuntu2.3
- ubuntu/vim-runtime 2:8.2.3995-1ubuntu2.3
- ubuntu/vim 2:8.2.3995-1ubuntu2.3
- ubuntu/wget 1.21.2-2ubuntu1
- ubuntu/x11-common 1:7.7 23ubuntu2
- ubuntu/x11proto-dev 2021.5-1
- ubuntu/xfonts-utils 1:7.7 6build2
- ubuntu/xorg-sgml-doctools 1:1.11-1.1
- ubuntu/xtrans-dev 1.4.0-1
- ubuntu/xxd 2:8.2.3995-1ubuntu2.3
- ubuntu/xz-utils 5.2.5-2ubuntu1
- ubuntu/xzdec 5.2.5-2ubuntu1
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- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2
- shower-material 1.0.4
- shower-ribbon 2.0.5
- rmdshower 1.0.0
- shower-core 2.0.6
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.1.3
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.1.3
- casperjs 1.1.0-beta5
- context 1.0.0
- shower 2.1.1
- bash 5.1.16
- github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
- golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
- stdlib 1.18.1
- JRI:JRI *
- JRIEngine:JRIEngine *
- PngEncoder:PngEncoder *
- REngine:REngine *
- ai.h2o:xgboost4j-linux-gpuv4 1.2.0.16
- ai.h2o:xgboost4j-linux-minimal 1.2.0.16
- ai.h2o:xgboost4j-osx-minimal 1.2.0.16
- ai.h2o:xgboost4j_2.12 1.2.0.16
- cfunc_test:cfunc_test *
- com.amazonaws:aws-java-sdk-core 1.12.268
- com.amazonaws:aws-java-sdk-kms 1.12.268
- com.amazonaws:aws-java-sdk-s3 1.12.268
- com.amazonaws:aws-java-sdk-sts 1.12.268
- com.amazonaws:jmespath-java 1.12.268
- com.apporiented:hierarchical-clustering 1.1.0
- com.carrotsearch:java-sizeof 0.0.5
- com.chemspider.www:chemspider_webservices 1.0
- com.fasterxml.jackson.core:jackson-annotations 2.13.1
- com.fasterxml.jackson.core:jackson-core 2.13.1
- com.fasterxml.jackson.core:jackson-databind 2.13.1
- com.fasterxml.jackson.dataformat:jackson-dataformat-cbor 2.13.1
- com.github.fommil.netlib:core 1.1.2
- com.github.fommil.netlib:native_ref-java 1.1
- com.github.fommil.netlib:native_system-java 1.1
- com.github.fommil.netlib:netlib-native_ref-linux-armhf 1.1
- com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
- com.github.fommil.netlib:netlib-native_ref-win-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-linux-armhf 1.1
- com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-win-x86_64 1.1
- com.github.fommil:jniloader 1.1
- com.github.gilleain.signatures:signatures 1.1
- com.github.jnr:jffi 1.2.10
- com.github.jnr:jnr-constants 0.9.0
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- com.github.jnr:jnr-posix 3.0.23
- com.github.oshi:oshi-core 5.7.4
- com.github.stephenc.jcip:jcip-annotations 1.0-1
- com.github.wendykierp:JTransforms 3.1
- com.google.api-client:google-api-client 1.33.1
- com.google.api.grpc:proto-google-common-protos 2.7.2
- com.google.api.grpc:proto-google-iam-v1 1.2.1
- com.google.apis:google-api-services-storage v1-rev20211201-1.32.1
- com.google.auth:google-auth-library-credentials 1.4.0
- com.google.auth:google-auth-library-oauth2-http 1.4.0
- com.google.auto.value:auto-value-annotations 1.9
- com.google.cloud:google-cloud-core-http 2.4.0
- com.google.cloud:google-cloud-core 2.4.0
- com.google.cloud:google-cloud-storage 2.4.2
- com.google.code.findbugs:jsr305 3.0.2
- com.google.code.gson:gson 2.9.0
- com.google.errorprone:error_prone_annotations 2.7.1
- com.google.guava:failureaccess 1.0.1
- com.google.guava:guava 17.0
- com.google.guava:guava 19.0
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
- com.google.http-client:google-http-client-apache-v2 1.41.2
- com.google.http-client:google-http-client-appengine 1.41.2
- com.google.http-client:google-http-client-gson 1.41.2
- com.google.http-client:google-http-client-jackson2 1.41.2
- com.google.http-client:google-http-client 1.41.2
- com.google.j2objc:j2objc-annotations 1.3
- com.google.oauth-client:google-oauth-client 1.33.0
- com.google.protobuf:protobuf-java-util 3.19.3
- com.google.protobuf:protobuf-java 3.19.3
- com.googlecode.json-simple:json-simple 1.1.1
- com.googlecode.matrix-toolkits-java:mtj 1.0.4
- com.jamesmurty.utils:java-xmlbuilder 0.4
- com.jcraft:jsch 0.1.54
- com.nimbusds:nimbus-jose-jwt 9.11.3
- com.squareup.okhttp:okhttp 2.4.0
- com.squareup.okio:okio 1.4.0
- com.sun.jersey:jersey-core 1.9
- com.sun.jersey:jersey-json 1.9
- com.sun.jersey:jersey-server 1.9
- com.sun.jna:jna 5.10.0
- commons-cli:commons-cli 1.2
- commons-codec:commons-codec 1.15
- commons-collections:commons-collections 3.2.2
- commons-configuration:commons-configuration 1.6
- commons-fileupload:commons-fileupload 1.3.1
- commons-io:commons-io 2.11.0
- commons-io:commons-io 2.4
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.2
- commons-net:commons-net 3.1
- de.ipbhalle.metfrag.r:MetFragR 2.4.2
- de.ipbhalle.metfraglib:MetFragLib 2.4.2
- h2o-genmodel:h2o-genmodel *
- h2o:h2o *
- io.github.dan2097:jna-inchi-api 1.1
- io.github.dan2097:jna-inchi-core 1.1
- io.github.dan2097:jna-inchi-darwin-aarch64 1.1
- io.github.dan2097:jna-inchi-darwin-x86-64 1.1
- io.github.dan2097:jna-inchi-linux-arm 1.1
- io.github.dan2097:jna-inchi-linux-x86-64 1.1
- io.github.dan2097:jna-inchi-linux-x86 1.1
- io.github.dan2097:jna-inchi-win32-x86-64 1.1
- io.github.dan2097:jna-inchi-win32-x86 1.1
- jama:jama 1.0.3
- javax.activation:javax.activation-api 1.2.0
- javax.annotation:javax.annotation-api 1.3.2
- javax.servlet:javax.servlet-api 3.1.0
- javax.vecmath:vecmath 1.5.2
- javax.ws.rs:jsr311-api 1.1.1
- javax.xml.bind:jaxb-api 2.3.1
- jaxen:jaxen 1.1.6
- jline:jline 2.13
- joda-time:joda-time 2.10.13
- joda-time:joda-time 2.11.0
- jrt-fs:jrt-fs 11.0.17
- net.minidev:accessors-smart 2.4.7
- net.minidev:json-smart 2.4.7
- net.sf.jnati:jnati-core 0.4
- net.sf.jnati:jnati-deploy 0.4
- net.sf.jni-inchi:jni-inchi 0.8
- net.sf.opencsv:opencsv 2.3
- no.priv.garshol.duke:duke 1.2
- org._3pq.jgrapht.demo.JGraphAdapterDemo:jgrapht 0.6.0
- org.antlr:antlr-runtime 3.1.3
- org.antlr:antlr4-runtime 4.7.2
- org.apache.avro:avro 1.11.0
- org.apache.axis2:axis2-adb 1.6.4
- org.apache.axis2:axis2-kernel 1.6.4
- org.apache.axis2:axis2-transport-http 1.6.4
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- org.apache.commons:commons-compress 1.10
- org.apache.commons:commons-csv 1.2
- org.apache.commons:commons-lang3 3.12.0
- org.apache.commons:commons-lang3 3.8.1
- org.apache.commons:commons-math3 3.1.1
- org.apache.commons:commons-math3 3.6.1
- org.apache.commons:commons-math 2.2
- org.apache.commons:commons-text 1.6
- org.apache.curator:curator-client 2.7.1
- org.apache.curator:curator-framework 2.7.1
- org.apache.curator:curator-recipes 2.7.1
- org.apache.directory.api:api-util 1.0.0-M20
- org.apache.geronimo.specs:geronimo-activation_1.1_spec 1.0.2
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- org.apache.geronimo.specs:geronimo-stax-api_1.0_spec 1.0.1
- org.apache.geronimo.specs:geronimo-ws-metadata_2.0_spec 1.1.2
- org.apache.hadoop:hadoop-annotations 2.8.4
- org.apache.hadoop:hadoop-auth 2.8.4
- org.apache.hadoop:hadoop-aws 2.8.4
- org.openscience.cdk:cdk-legacy 2.8
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- org.apache.hadoop:hadoop-hdfs-client 2.8.4
- org.apache.htrace:htrace-core4 4.0.1-incubating
- org.apache.httpcomponents:httpclient 4.5.13
- org.apache.httpcomponents:httpcore 4.0
- org.apache.httpcomponents:httpcore 4.4.13
- org.apache.httpcomponents:httpmime 4.5.2
- org.apache.james:apache-mime4j-core 0.7.2
- org.apache.logging.log4j:log4j-1.2-api 2.17.1
- org.apache.logging.log4j:log4j-1.2-api 2.18.0
- org.apache.logging.log4j:log4j-api 2.17.1
- org.apache.logging.log4j:log4j-api 2.18.0
- org.apache.logging.log4j:log4j-core 2.17.1
- org.apache.logging.log4j:log4j-core 2.18.0
- org.apache.neethi:neethi 3.0.3
- org.apache.parquet:parquet-column 1.8.1
- org.apache.parquet:parquet-common 1.8.1
- org.apache.parquet:parquet-encoding 1.8.1
- org.apache.parquet:parquet-format 2.3.0-incubating
- org.apache.parquet:parquet-hadoop 1.8.1
- org.apache.parquet:parquet-jackson 1.8.1
- org.apache.sling:org.apache.sling.scripting.api 2.1.6
- org.apache.woden:woden-api 1.0M9
- org.apache.woden:woden-impl-commons 1.0M9
- org.apache.woden:woden-impl-dom 1.0M9
- org.apache.ws.commons.axiom:axiom-api 1.2.15
- org.apache.ws.commons.axiom:axiom-compat 1.2.15
- org.apache.ws.commons.axiom:axiom-impl 1.2.15
- org.apache.ws.commons.axiom:core-aspects 1.2.15
- org.apache.ws.commons.axiom:om-aspects 1.2.15
- org.apache.ws.commons.schema:XmlSchema 1.4.7
- org.apache.xerces.impl.Version:xercesImpl 2.12.2
- org.apache.xml.serializer:serializer 2.7.2
- org.apache.xmlcommons.Version:xml-apis 1.4.01
- org.blueobelisk:cmlxom 4.3
- org.blueobelisk:euclid 2.3
- org.ccil.cowan.tagsoup.CommandLine:tagsoup 1.2.1
- org.codehaus.jettison:jettison 1.1
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.eclipse.jetty.websocket:websocket-api 9.4.11.v20180605
- org.eclipse.jetty.websocket:websocket-client 9.4.11.v20180605
- org.eclipse.jetty.websocket:websocket-common 9.4.11.v20180605
- org.eclipse.jetty.websocket:websocket-server 9.4.11.v20180605
- org.eclipse.jetty.websocket:websocket-servlet 9.4.11.v20180605
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- org.eclipse.jetty:jetty-continuation 9.4.11.v20180605
- org.eclipse.jetty:jetty-http 9.4.11.v20180605
- org.eclipse.jetty:jetty-io 9.4.11.v20180605
- org.eclipse.jetty:jetty-jaas 9.4.11.v20180605
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- org.eclipse.jetty:jetty-servlets 9.4.11.v20180605
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- org.eclipse.jetty:jetty-xml 9.4.11.v20180605
- org.freehep:freehep-graphics2d 2.4
- org.freehep:freehep-graphicsbase 2.4
- org.freehep:freehep-graphicsio-pdf 2.4
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- org.openscience.cdk:cdk-pdbcml 2.8
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- org.openscience.cdk:cdk-qsar 2.8
- org.openscience.cdk:cdk-qsaratomic 2.8
- org.openscience.cdk:cdk-qsarbond 2.8
- org.openscience.cdk:cdk-qsarcml 2.8
- org.openscience.cdk:cdk-qsarionpot 2.8
- org.openscience.cdk:cdk-qsarmolecular 1.5.12
- org.openscience.cdk:cdk-qsarmolecular 2.8
- org.openscience.cdk:cdk-qsarprotein 2.8
- org.openscience.cdk:cdk-reaction 1.5.12
- org.openscience.cdk:cdk-reaction 2.8
- org.openscience.cdk:cdk-render 1.5.12
- org.openscience.cdk:cdk-render 2.8
- org.openscience.cdk:cdk-renderawt 1.5.12
- org.openscience.cdk:cdk-renderawt 2.8
- org.openscience.cdk:cdk-renderbasic 1.5.12
- org.openscience.cdk:cdk-renderbasic 2.8
- org.openscience.cdk:cdk-renderextra 2.8
- org.openscience.cdk:cdk-sdg 1.5.12
- org.openscience.cdk:cdk-sdg 2.8
- org.openscience.cdk:cdk-signature 1.5.12
- org.openscience.cdk:cdk-signature 2.8
- org.openscience.cdk:cdk-silent 1.5.12
- org.openscience.cdk:cdk-silent 2.8
- org.openscience.cdk:cdk-smarts 1.5.12
- org.openscience.cdk:cdk-smarts 2.8
- org.openscience.cdk:cdk-smiles 1.5.12
- org.openscience.cdk:cdk-smiles 2.8
- org.openscience.cdk:cdk-smsd 1.5.12
- org.openscience.cdk:cdk-standard 1.5.12
- org.openscience.cdk:cdk-standard 2.8
- org.openscience.cdk:cdk-structgen 2.8
- org.openscience.cdk:cdk-tautomer 1.5.12
- org.openscience.cdk:cdk-tautomer 2.8
- org.openscience.cdk:cdk-valencycheck 1.5.12
- org.openscience.cdk:cdk-valencycheck 2.8
- org.slf4j:slf4j-api 1.7.32
- org.slf4j:slf4j-log4j12 1.7.10
- org.threeten:threetenbp 1.5.2
- pl.edu.icm:JLargeArrays 1.5
- rcdk:rcdk *
- software.amazon.ion:ion-java 1.0.2
- uk.ac.ebi.beam:beam-core 0.9.1
- uk.ac.ebi.beam:beam-core 1.3.4
- uk.ac.ebi.beam:beam-func 0.9.1
- uk.ac.ebi.beam:beam-func 1.3.4
- xalan:xalan 2.7.2