Ecosyste.ms: Docker

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alkoenig08/harmonyseurat : latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

Ubuntu 20.04.5 LTS

Latest release: over 1 year ago - 15 downloads - 931 dependencies

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.81.0-1
Biobase 2.58.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.20
BiocParallel 1.32.5
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DDRTree 0.1.5
DESeq2 1.38.3
DEoptimR 1.0-11
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
FNN 1.1.3.1
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.2
HDF5Array 1.26.0
HSMMSingleCell 1.18.0
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-56
MAST 1.24.1
Matrix 1.4-1
Matrix 1.5-3
MatrixGenerics 1.10.0
MatrixModels 0.5-1
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RBGL 1.74.0
RColorBrewer 1.1-3
RCurl 1.98-1.10
ROCR 1.0-11
RSQLite 2.3.0
RUnit 0.4.32
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppArmadillo 0.12.0.1.0
RcppEigen 0.3.3.9.3
RcppGSL 0.3.13
RcppGSLExample 0.0.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rdpack 2.4
RdpackTester 1.0
Rfast2 0.1.4
Rfast 2.0.7
Rhdf5lib 1.20.0
Rtsne 0.16
S4Vectors 0.36.1
Seurat 4.3.0
SeuratDisk 0.0.0.9020
SeuratObject 4.1.3
SingleCellExperiment 1.20.0
SoupX 1.6.2
SparseM 1.81
SummarizedExperiment 1.28.0
TFisher 0.2.0
TH.data 1.1-1
VGAM 1.1-7
XML 3.99-0.13
XVector 0.38.0
abind 1.4-5
annotate 1.76.0
ape 5.7
askpass 1.1
base64enc 0.1-3
base 4.2.0
beachmat 2.14.0
beachtest 1.0.0
biocViews 1.66.2
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
bslib 0.4.2
caTools 1.18.2
cachem 1.0.7
class 7.3-20
cli 3.6.0
cluster 2.1.3
codetools 0.2-18
colorspace 2.1-0
combinat 0.0-8
commonmark 1.8.1
compiler 4.2.0
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.2.0
deldir 1.0-6
digest 0.6.31
docopt 0.7.1
dplyr 1.1.0
dqrng 0.3.0
ellipsis 0.3.2
enrichR 3.1
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastICA 1.2-3
fastmap 1.1.1
fitdistrplus 1.1-8
fontawesome 0.5.0
foreign 0.8-82
formatR 1.14
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.31.0
geneplotter 1.76.0
generics 0.1.3
ggplot2 3.4.1
ggrepel 0.9.3
ggridges 0.5.4
glmGamPoi 1.10.2
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.2.0
graph 1.76.0
graphics 4.2.0
grid 4.2.0
gridExtra 2.3
gtable 0.3.1
gtools 3.9.4
harmony 0.1.1
hdf5r 1.3.8
here 1.0.1
highr 0.10
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.9
httr 1.4.5
ica 1.0-3
igraph 1.4.1
irlba 2.3.5.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
kernlab 0.9-32
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
leidenbase 0.1.14
lifecycle 1.0.3
limma 3.54.1
listenv 0.9.0
littler 0.3.15
lmtest 0.9-40
locfit 1.5-9.7
magrittr 2.0.3
mathjaxr 1.6-0
matrixStats 0.63.0
memoise 2.0.1
metap 1.8
methods 4.2.0
mgcv 1.8-40
mime 0.12
miniUI 0.1.1.1
mixtools 2.0.0
mnormt 2.1.1
monocle 2.26.0
morebeach 1.0.0
morebeachtests 1.0.0
multcomp 1.4-22
multtest 2.54.0
munsell 0.5.0
mutoss 0.1-12
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-157
nnet 7.3-17
numDeriv 2016.8-1.1
openssl 2.0.5
org.testing.db 0.1
parallel 4.2.0
parallelly 1.34.0
patchwork 1.1.2
pbapply 1.7-0
pheatmap 1.0.12
pillar 1.8.1
pkgconfig 2.0.3
plogr 0.2.0
plotly 4.10.1
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
prettyunits 1.1.1
progress 1.2.2
progressr 0.13.0
promises 1.2.0.1
proxy 0.4-27
purrr 1.0.1
qlcMatrix 0.9.7
qqconf 1.3.1
quantreg 5.94
rappdirs 0.3.3
rbibutils 2.2.13
remotes 2.4.2
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.28
rgeos 0.6-1
rhdf5 2.42.0
rhdf5filters 1.10.0
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.20
robustbase 0.95-0
rpart 4.1.16
rprojroot 2.0.3
sandwich 3.0-2
sass 0.4.5
scales 1.2.1
scattermore 0.8
sctransform 0.3.5
segmented 1.6-2
shiny 1.7.4
sitmo 2.0.2
slam 0.1-50
sn 2.1.0
snow 0.4-4
sourcetools 0.1.7-1
sp 1.6-0
sparseMatrixStats 1.10.0
sparsesvd 0.2-2
spatial 7.3-15
spatstat.data 3.0-0
spatstat.explore 3.0-6
spatstat.geom 3.0-6
spatstat.random 3.1-3
spatstat.sparse 3.0-0
spatstat.utils 3.0-1
splines 4.2.0
stats4 4.2.0
stats 4.2.0
stringi 1.7.12
stringr 1.5.0
survival 3.3-1
sys 3.4.1
tcltk 4.2.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.8
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.44
tools 4.2.0
translations 4.2.0
utf8 1.2.3
utils 4.2.0
uwot 0.1.14
vctrs 0.5.2
viridis 0.6.2
viridisLite 0.4.1
withr 2.5.0
xfun 0.37
xtable 1.8-4
yaml 2.3.7
zlibbioc 1.44.0
zoo 1.8-11

bash 5.0.17