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cbgr/cager261 : 1.1
Container for the CAGEr tool version 2.6.1.
Ubuntu 22.04.2 LTS
Latest release: 9 months ago - 22 downloads - 1,356 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.62.2
- AnnotationFilter 1.24.0
- BH 1.81.0-1
- BSgenome.Hsapiens.UCSC.hg38 1.4.5
- BSgenome 1.68.0
- Biobase 2.60.0
- BiocBaseUtils 1.2.0
- BiocFileCache 2.8.0
- BiocGenerics 0.46.0
- BiocIO 1.10.0
- BiocManager 1.30.20
- BiocParallel 1.34.2
- BiocVersion 3.17.1
- Biostrings 2.68.1
- CAGEfightR 1.20.0
- CAGEr 2.6.1
- ChIPseeker 1.36.0
- DBI 1.1.3
- DOSE 3.26.1
- DelayedArray 0.26.6
- DelayedMatrixStats 1.22.1
- Formula 1.2-5
- GO.db 3.17.0
- GOSemSim 2.26.1
- GenomeInfoDb 1.36.1
- GenomeInfoDbData 1.2.10
- GenomicAlignments 1.36.0
- GenomicFeatures 1.52.1
- GenomicFiles 1.36.0
- GenomicInteractions 1.34.0
- GenomicRanges 1.52.0
- Gviz 1.44.0
- HDO.db 0.99.1
- Hmisc 5.1-0
- IRanges 2.34.1
- InteractionSet 1.28.1
- KEGGREST 1.40.0
- KernSmooth 2.23-20
- MASS 7.3-59
- Matrix 1.5-4
- MatrixGenerics 1.12.2
- MultiAssayExperiment 1.26.0
- ProtGenerics 1.32.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- RSQLite 2.3.1
- Rcpp 1.0.10
- RcppArmadillo 0.12.4.1.0
- RcppEigen 0.3.3.9.3
- Rhtslib 2.2.0
- Rsamtools 2.16.0
- S4Arrays 1.0.4
- S4Vectors 0.38.1
- SummarizedExperiment 1.30.2
- TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
- TxDb.Hsapiens.UCSC.hg38.knownGene 3.17.0
- VGAM 1.1-8
- VariantAnnotation 1.46.0
- XML 3.99-0.14
- XVector 0.40.0
- ape 5.7-1
- aplot 0.1.10
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.3.0
- biomaRt 2.56.1
- biovizBase 1.48.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.7
- callr 3.7.3
- checkmate 2.2.0
- class 7.3-21
- cli 3.6.1
- clipr 0.8.0
- cluster 2.1.4
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 4.3.0
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- curl 5.0.0
- data.table 1.14.8
- datasets 4.3.0
- dbplyr 2.3.3
- deldir 1.0-9
- desc 1.4.2
- devtools 2.4.5
- dichromat 2.0-0.1
- diffobj 0.3.5
- digest 0.6.31
- docopt 0.7.1
- downlit 0.4.2
- dplyr 1.1.2
- ellipsis 0.3.2
- enrichplot 1.20.0
- ensembldb 2.24.0
- evaluate 0.20
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- fastmatch 1.1-3
- fgsea 1.26.0
- filelock 1.0.2
- fontawesome 0.5.1
- foreign 0.8-84
- formatR 1.14
- formula.tools 1.7.1
- fs 1.6.2
- futile.logger 1.4.3
- futile.options 1.0.1
- generics 0.1.3
- gert 1.9.2
- getopt 1.20.3
- ggforce 0.4.1
- ggfun 0.1.1
- ggnewscale 0.4.9
- ggplot2 3.4.2
- ggplotify 0.1.1
- ggraph 2.1.0
- ggrepel 0.9.3
- ggtree 3.8.0
- gh 1.4.0
- gitcreds 0.1.2
- glue 1.6.2
- gplots 3.1.3
- grDevices 4.3.0
- graphics 4.3.0
- graphlayouts 1.0.0
- grid 4.3.0
- gridExtra 2.3
- gridGraphics 0.5-1
- gtable 0.3.3
- gtools 3.9.4
- highr 0.10
- hms 1.1.3
- htmlTable 2.4.1
- htmltools 0.5.5
- htmlwidgets 1.6.2
- httpuv 1.6.9
- httr2 0.2.2
- httr 1.4.5
- igraph 1.5.0
- ini 0.3.1
- interp 1.1-4
- isoband 0.2.7
- jpeg 0.1-10
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.21-8
- latticeExtra 0.6-30
- lazyeval 0.2.2
- lifecycle 1.0.3
- littler 0.3.18
- lobstr 1.1.2
- magrittr 2.0.3
- matrixStats 1.0.0
- memoise 2.0.1
- methods 4.3.0
- mgcv 1.8-42
- mime 0.12
- miniUI 0.1.1.1
- munsell 0.5.0
- nlme 3.1-162
- nnet 7.3-18
- openssl 2.0.6
- operator.tools 1.6.3
- optparse 1.7.3
- org.Hs.eg.db 3.17.0
- org.testing.db 0.1
- parallel 4.3.0
- patchwork 1.1.2
- permute 0.9-7
- pillar 1.9.0
- pkgbuild 1.4.0
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2
- plogr 0.2.0
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.8.1
- profvis 0.3.7
- progress 1.2.2
- promises 1.2.0.1
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- ps 1.7.5
- purrr 1.0.1
- qvalue 2.32.0
- ragg 1.2.5
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- rcmdcheck 1.4.0
- rematch2 2.1.2
- remotes 2.4.2
- reshape2 1.4.4
- restfulr 0.0.15
- rjson 0.2.21
- rlang 1.1.1
- rmarkdown 2.21
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.14
- rtracklayer 1.60.0
- rversions 2.1.2
- sass 0.4.5
- scales 1.2.1
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- sessioninfo 1.2.2
- shadowtext 0.1.2
- shiny 1.7.4
- snow 0.4-4
- som 0.3-5.1
- sourcetools 0.1.7-1
- sparseMatrixStats 1.12.2
- spatial 7.3-16
- splines 4.3.0
- stats4 4.3.0
- stats 4.3.0
- stringdist 0.9.10
- stringi 1.7.12
- stringr 1.5.0
- survival 3.5-5
- sys 3.4.1
- systemfonts 1.0.4
- tcltk 4.3.0
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.7
- textshaping 0.3.6
- tibble 3.2.1
- tidygraph 1.2.3
- tidyr 1.3.0
- tidyselect 1.2.0
- tidytree 0.4.4
- tinytex 0.45
- tools 4.3.0
- translations 4.3.0
- treeio 1.24.2
- tweenr 2.0.2
- urlchecker 1.0.1
- usethis 2.1.6
- utf8 1.2.3
- utils 4.3.0
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- vegan 2.6-4
- viridis 0.6.3
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- waldo 0.4.0
- whisker 0.4.1
- withr 2.5.0
- xfun 0.39
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- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- yulab.utils 0.0.6
- zip 2.3.0
- zlibbioc 1.46.0
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/apt-utils 2.4.9
- ubuntu/apt 2.4.9
- ubuntu/autoconf 2.71-2
- ubuntu/automake 1:1.16.5-1.3
- ubuntu/autotools-dev 20220109.1
- ubuntu/base-files 12ubuntu4.3
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash-completion 1:2.11-5ubuntu1
- ubuntu/bash 5.1-6ubuntu1
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- github.com/evanw/esbuild v0.0.0-20220830001118-78a1e00b2e69
- golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8
- stdlib 1.19
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2