Ecosyste.ms: Docker

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andrewatmp/qiime_unzip : latest

Latest release: over 1 year ago - 93 downloads - 598 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
ANCOMBC 2.0.1
BH 1.81.0-1
Biobase 2.58.0
BiocBaseUtils 1.0.0
BiocGenerics 0.44.0
BiocNeighbors 1.16.0
BiocParallel 1.32.5
BiocSingular 1.14.0
Biostrings 2.66.0
CVXR 1.0-11
Cairo 1.6-0
DBI 1.1.3
DECIPHER 2.26.0
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
DescTools 0.99.49
DirichletMultinomial 1.40.0
ECOSolveR 0.5.5
Exact 3.2
FNN 1.1.3.2
Formula 1.2-5
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicRanges 1.50.0
Hmisc 5.1-0
IRanges 2.32.0
MASS 7.3-60
Matrix 1.5-4.1
MatrixGenerics 1.10.0
MultiAssayExperiment 1.24.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
RSpectra 0.16-1
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppML 0.3.7
RcppParallel 5.1.6
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
Rdpack 2.4
RdpackTester 1.0
Rhdf5lib 1.20.0
Rhtslib 2.0.0
Rmpfr 0.9-2
Rsamtools 2.14.0
Rtsne 0.16
S4Vectors 0.36.0
ScaledMatrix 1.6.0
ShortRead 1.56.0
SingleCellExperiment 1.20.0
SummarizedExperiment 1.28.0
TreeSummarizedExperiment 2.6.0
XVector 0.38.0
ade4 1.7-22
ape 5.7-1
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.3
beachmat 2.14.0
beachtest 1.0.0
beeswarm 0.4.0
bibtex 0.5.1
biomformat 1.26.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
broom 1.0.4
bslib 0.4.2
cachem 1.0.8
callr 3.7.3
cellranger 1.1.0
checkmate 2.2.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
compiler 4.2.3
conflicted 1.2.0
cpp11 0.4.3
crayon 1.5.2
curl 4.3.3
dada2 1.26.0
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.2
decontam 1.18.0
deldir 1.0-9
digest 0.6.31
doParallel 1.0.17
doRNG 1.8.6
dplyr 1.1.2
dqrng 0.3.0
dtplyr 1.3.1
e1071 1.7-13
ellipsis 0.3.2
emmeans 1.8.6
energy 1.7-11
estimability 1.4.1
evaluate 0.21
expm 0.999-7
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fontawesome 0.5.1
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
frictionless 1.0.2
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
gbRd 0.4-11
generics 0.1.3
getopt 1.20.3
ggbeeswarm 0.7.2
ggplot2 3.4.2
ggrastr 1.0.1
ggrepel 0.9.3
gld 2.6.6
glue 1.6.2
gmp 0.7-1
googledrive 2.1.0
googlesheets4 1.1.0
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gridExtra 2.3
gsl 2.1-8
gtable 0.3.3
haven 2.5.2
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.5
htmlwidgets 1.6.2
httr 1.4.6
hwriter 1.3.2.1
ids 1.0.1
igraph 1.4.2
interp 1.1-4
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
lattice 0.21-8
latticeExtra 0.6-30
lazyeval 0.2.2
lifecycle 1.0.3
lme4 1.1-33
lmerTest 3.1-3
lmom 2.9
lubridate 1.9.2
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.3
mgcv 1.8-42
mia 1.6.0
mime 0.12
minqa 1.2.5
modelr 0.1.11
morebeach 1.0.0
morebeachtests 1.0.0
multtest 2.54.0
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-162
nloptr 2.0.3
nnet 7.3-19
numDeriv 2016.8-1.1
openssl 2.0.6
optparse 1.7.3
osqp 0.6.0.8
parallel 4.2.3
permute 0.9-7
pheatmap 1.0.12
phyloseq 1.42.0
pillar 1.9.0
pixmap 0.4-12
pkgconfig 2.0.3
pkgmaker 0.32.10
plogr 0.2.0
plyr 1.8.8
png 0.1-8
prettyunits 1.1.1
processx 3.8.1
progress 1.2.2
proxy 0.4-27
ps 1.7.5
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
rbibutils 2.2.13
readr 2.1.4
readxl 1.4.2
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
reshape2 1.4.4
rhdf5 2.42.0
rhdf5filters 1.10.0
rlang 1.1.1
rmarkdown 2.21
rngtools 1.5.2
rootSolve 1.8.2.3
rpart 4.1.19
rstudioapi 0.14
rsvd 1.0.5
rvest 1.0.3
sass 0.4.6
scales 1.2.1
scater 1.26.0
scs 3.2.4
scuttle 1.8.0
selectr 0.4-2
sitmo 2.0.2
snow 0.4-4
sp 1.6-0
sparseMatrixStats 1.10.0
splines 4.2.3
statmod 1.5.0
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-5
sys 3.4.2
systemfonts 1.0.4
tcltk 4.2.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.4.2
tidyverse 2.0.0
timechange 0.2.0
tinytex 0.45
tools 4.2.3
translations 4.2.3
treeio 1.22.0
tzdb 0.4.0
utf8 1.2.3
utils 4.2.3
uuid 1.1-0
uwot 0.1.14
vctrs 0.6.2
vegan 2.6-4
vipor 0.4.5
viridis 0.6.3
viridisLite 0.4.1
vroom 1.6.3
withr 2.5.0
xfun 0.39
xml2 1.3.4
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.6
zlibbioc 1.44.0

bash 5.1.4
java 11.0.13 7-b1751.21
java 17.0.3-internal 0-adhoc..src
python 3.8.16
python 3.9.17
python 3.9.2

command-line-arguments (devel)
edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7
stdlib 1.17
stdlib 1.19.3

cisd-jhdf5:cisd-jhdf5 *
commons-beanutils:commons-beanutils 1.8.3
commons-collections:commons-collections 3.2.1
commons-io:commons-io 1.4
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
jbzip2:jbzip2 0.9
jrt-fs:jrt-fs 11.0.13
jrt-fs:jrt-fs 17.0.3-internal
net.sf.ezmorph:ezmorph 1.0.6
sam:sam 1.103
seppJsonMerger:seppJsonMerger *

@jupyter-widgets/jupyterlab-manager 5.0.7
bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
debug 3.2.6
js 1.0.0
jupyterlab_pygments 0.2.2
license-checker 25.0.1
nopt 4.0.1
spdx-license-ids 3.0.5
validate-npm-package-license 3.0.4

CacheControl 0.12.11
Cython 0.29.35
DendroPy 4.5.2
Jinja2 3.1.2
MarkupSafe 2.1.2
Pillow 9.5.0
PyJWT 2.7.0
PyNaCl 1.5.0
PyQt5-sip 12.11.0
PyQt5 5.15.7
PySocks 1.7.1
PyYAML 6.0
Pygments 2.15.1
Send2Trash 1.8.2
altair 5.0.1
anyio 3.7.0
appdirs 1.4.4
argcomplete 3.0.8
argon2-cffi-bindings 21.2.0
argon2-cffi 21.3.0
astor 0.8.1
asttokens 2.2.1
atpublic 3.0.1
attrs 23.1.0
backcall 0.2.0
backports.functools-lru-cache 1.6.4
bcrypt 3.2.2
beautifulsoup4 4.12.2
bibtexparser 1.4.0
biom-format 2.1.12
bleach 6.0.0
bokeh 3.1.1
boltons 23.0.0
brotlipy 0.7.0
bytecode 0.13.0.dev0
cached-property 1.5.2
certifi 2023.5.7
certifi 2023.7.22
cffi 1.15.1
charset-normalizer 2.0.4
charset-normalizer 3.1.0
click 8.1.3
colorama 0.4.6
comm 0.1.3
conda-package-handling 2.1.0
conda 23.7.0
conda_package_streaming 0.8.0
contourpy 1.0.7
cryptography 39.0.1
cryptography 40.0.2
cutadapt 4.4
cycler 0.11.0
deblur 1.1.1
debugpy 1.6.7
decorator 4.4.2
defusedxml 0.7.1
dill 0.3.6
dnaio 0.10.0
emperor 1.0.3
entrypoints 0.4
exceptiongroup 1.1.1
executing 1.2.0
fastcluster 1.2.6
fastjsonschema 2.17.1
flask 1.1.1
flit_core 3.9.0
flufl.lock 7.1
fonttools 4.39.4
formulaic 0.6.1
future 0.18.3
globus-sdk 3.19.0
gneiss 0.4.6
graphlib-backport 1.0.3
h5py 2.10.0
hdmedians 0.14.2
html5lib 1.1
idna 3.4
ijson 3.2.0.post0
importlib-metadata 4.8.3
importlib-resources 5.12.0
iniconfig 2.0.0
interface-meta 1.3.0
iow 1.0.5
ipykernel 6.23.1
ipython-genutils 0.2.0
ipython 8.12.2
ipywidgets 8.0.6
isal 1.1.0
jedi 0.18.2
joblib 1.2.0
jsonpatch 1.32
jsonpointer 2.1
jsonschema 4.17.3
jupyter-events 0.6.3
jupyter_client 8.2.0
jupyter_core 5.3.0
jupyter_server 2.6.0
jupyter_server_terminals 0.4.4
jupyterlab-pygments 0.2.2
jupyterlab-widgets 3.0.7
kiwisolver 1.4.4
llvmlite 0.39.1
lockfile 0.12.2
lxml 4.9.2
lz4 4.3.2
matplotlib-inline 0.1.6
matplotlib 3.6.0
mercurial 5.6.1
mistune 2.0.5
msgpack 1.0.5
munkres 1.1.4
mypy-extensions 1.0.0
mypy 0.902
mypy 1.3.0
natsort 8.3.1
nbclassic 1.0.0
nbclient 0.8.0
nbconvert 7.4.0
nbformat 5.8.0
nest-asyncio 1.5.6
networkx 3.1
nose 1.3.7
notebook 6.5.4
notebook_shim 0.2.3
numba 0.56.4
numpy 1.23.5
overrides 7.3.1
packaging 23.0
packaging 23.1
pandas 1.5.3
pandocfilters 1.5.0
paramiko 3.2.0
parsl 2023.5.29
parso 0.8.3
patsy 0.5.3
pexpect 4.8.0
pickleshare 0.7.5
pip 23.1.2
pkgutil_resolve_name 1.3.10
platformdirs 3.5.1
pluggy 1.0.0
ply 3.11
prometheus-client 0.17.0
prompt-toolkit 3.0.38
provenance-lib 2023.5.1
psutil 5.9.5
ptyprocess 0.7.0
pure-eval 0.2.2
pyOpenSSL 23.0.0
pycosat 0.6.4
pycparser 2.21
pynndescent 0.5.10
pyparsing 3.0.9
pyrsistent 0.19.3
pytest 7.3.1
python-dateutil 2.8.2
python-json-logger 2.0.7
pytz 2023.3
pyzmq 25.0.2
q2-alignment 2023.5.0
q2-composition 2023.5.0
q2-cutadapt 2023.5.1
q2-dada2 2023.5.0
q2-deblur 2023.5.0
q2-demux 2023.5.0
q2-diversity-lib 2023.5.0
q2-diversity 2023.5.1
q2-emperor 2023.5.0
q2-feature-classifier 2023.5.0
q2-feature-table 2023.5.0
q2-fragment-insertion 2023.5.0
q2-gneiss 2023.5.0
q2-longitudinal 2023.5.0
q2-metadata 2023.5.0
q2-mystery-stew 2023.5.0
q2-phylogeny 2023.5.0
q2-quality-control 2023.5.0
q2-quality-filter 2023.5.0
q2-sample-classifier 2023.5.0
q2-taxa 2023.5.0
q2-types 2023.5.0
q2-vsearch 2023.5.0
q2cli 2023.5.1
q2galaxy 2023.5.0
q2templates 2023.5.0
qiime2 2023.5.1
requests 2.29.0
requests 2.31.0
rfc3339-validator 0.1.4
rfc3986-validator 0.1.1
ruamel-yaml-conda 0.15.100
ruamel.yaml.clib 0.2.6
ruamel.yaml 0.17.21
scikit-bio 0.5.7
scikit-learn 0.24.1
scipy 1.8.1
seaborn 0.12.2
sepp 4.3.10
setproctitle 1.3.2
setuptools 67.7.2
setuptools 67.8.0
sip 6.7.9
six 1.16.0
sniffio 1.3.0
soupsieve 2.3.2.post1
stack-data 0.6.2
statsmodels 0.14.0
tblib 1.7.0
terminado 0.17.1
threadpoolctl 3.1.0
tinycss2 1.2.1
toml 0.10.2
tomli 1.2.3
tomli 2.0.1
tomlkit 0.11.8
toolz 0.12.0
tornado 6.3.2
tqdm 4.65.0
traitlets 5.9.0
typeguard 2.13.3
types-cryptography 3.3.23.2
types-enum34 1.1.8
types-ipaddress 1.0.8
types-paramiko 3.0.0.10
types-requests 2.31.0.1
types-six 1.16.21.8
types-urllib3 1.26.25.13
typing-utils 0.1.0
typing_extensions 4.6.2
tzlocal 2.1
umap-learn 0.5.3
unicodedata2 15.0.0
unifrac 1.0.0
urllib3 1.26.16
urllib3 2.0.2
wcwidth 0.2.6
webencodings 0.5.1
websocket-client 1.5.2
wheel 0.38.4
wheel 0.40.0
widgetsnbextension 4.0.7
wrapt 1.15.0
xmltodict 0.13.0
xopen 1.7.0
xyzservices 2023.5.0
yq 3.2.2
zipp 3.15.0
zstandard 0.19.0