robertplayer/scidap-qiime2 stable

cgrlab/kraken v2.1.3

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

chasemc2/sgnf-sgpy 1.2.2

ldaveyl/bioinformatics-install-dev 0.1

gmtscience/kraken2bracken 2.1.2

bactopia/bactopia 2.2.0

globusgenomics/picrust 1.0

pvstodghill/pipeline-pirate 2023-11-20

emvcaest/markerscan latest

sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

nextgenusfs/funannotate-slim v1.8.17

Base funannotate image (no databases)

supark87/ngs-pipeline-process-amrfinder ver1.6

hoonbiolab/vcf-kit v1.1

ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:1.8.15 with a working chlorophyte_odb10 set, phyml for dn/ds and micromamba

qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

yingxiaomai/genomeassess v0

gmtscience/metaphlan4 4.0.6

a metaphlan4 docker with humann 3.5 suited for use in scitq or other systems (like nextflow)

theoaphidian/kraken-bracken latest

A container with all the tools to preprocess metagenome samples with kraken and bracken.

pvstodghill/pipeline-genomes 2023-11-21

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

jimmyliu1326/panx 1.6.0

staphb/emmtyper 0.2.0

andrewatmp/qiime_unzip latest

chriswyatt/bioseqio_gffread latest

ejfresch/kleborate 3.1.0

ejfresch/resfinder 1.0

gesiscss/binder-r2d-g5b5b759-melbournebioinformatics-2dcomp90014-32126b 503568ba294fdc8c8f0765271673385bdef0eece

emersonchao/dsc180b latest

shiramaty/qiime2-sratools latest

jinlongru/protclust v0.1.4

chriswyatt/genespaces latest

gmtscience/metaphlan3 3.1.0

katharinahoff/response-notebook devel

denglab/viroprofiler-bracken v0.2

jlphillips/csci 2025-08-08-p2

MTSU Department of Computer Science Stack

oxfordmmm/bugflow_amr_finder v0.1.1

sebimer/samba-v4-qiime2 2024.2

bioedge/edge_24_1_ubuntu18 20250922

prokan/assemble 0.2.0

kumalpha/qiime2-core latest

liutiantian/lrgasp_event2_metrics 0.9.1

nanozoo/abritamr 1.0.13--e4b83d1

jodyphelan/dengue-ngs latest

plaquette/r_helper rbase

helper repo to use certain r packages on a computing node

cgrlab/qiime2 2023.5

zjnolen/angsd-snakemake-pipeline 0.1

nanozoo/plannotate 1.2.0--5b46a44

vmikk/nextits 1.1.0

supark87/amrfinder ver1.2

gesiscss/binder-r2d-g5b5b759-esallychang-2dcommandline-5fedirect-5fasbcb-5fapril2023-fd9990 e5e0ef740d48ad22e4694e2133a990d17f6ed13b

kumalpha/mob-suite latest

spvensko/haplotypetools 1.0

pvstodghill/blast 2.15.0__2024-04-17

plaquette/prokka_helper centos

https://github.com/plaquette/prokka_container

hydragenetics/straglr 1.4.1

alekosbiofilos/vep lb

princessmaximacenter/gridss 2.13.2

chriswyatt/diamond latest

shaodongwei/metagenomics v2

gesiscss/binder-r2d-g5b5b759-karkman-2dbinder-5fdemo-a303a2 2b69c0efb07462e8cbca06c8b81ca725e59229d6

lazzarigioele/edacicola latest

pvstodghill/pipeline-mashtree 2023-10-06

zhuzide/phylophlan 3.0.0

nfcore/mag 1.2.0

wangxiugong/midas v.1.0

jimmyliu1326/ggcaller 1.3.4

nfcore/ampliseq 1.2.0

A Docker image for nf-core/ampliseq.

sangerbentleygroup/a1_bioinformatics_training 1.0.3

bactopia/annotate_genome 2.2.0

biocontainers/mitohifi 3.0.0_cv1

nfcore/bacass 1.1.1

A Docker container for the nf-core/bacass pipeline.

pvstodghill/pipeline-roary 2023-10-06

sridnona/espresso v3

bactopia/sequence_type 2.0.3

nfcore/coproid 1.1.1

A Docker image for the nf-core/coproid pipeline.

bactopia/assemble_genome 2.2.0

bactopia/bactopia-ci 1.3.0

broadinstitute/terra-jupyter-aou 2.1.13

nfcore/airrflowreport dev

sbouslama/sb-nullarbor alpha1

genomehubs/mitohifi latest

bioinforpi/dastool latest

bactopia/tools-hicap 1.7.1

ctomlins/metablast2 latest

sagnikbanerjee15/codan 1.2

mbwali/jupyterlab qiime2023

doejgi/jaws-blastn 1.0.0

sagnikbanerjee15/busco 5.4.5

cjchen/scauclass_2023 1.0