broadinstitute/terra-jupyter-aou 8bf6b13

nfcore/mag dev

nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

nfcore/ampliseq dev

A Docker image for nf-core/ampliseq.

bactopia/bactopia latest

bactopia/annotate_genome 2.2.0

bactopia/sequence_type 2.0.3

bactopia/assemble_genome 2.2.0

bactopia/bactopia-ci latest

nfcore/airrflowreport dev

nfcore/bacass dev

A Docker container for the nf-core/bacass pipeline.

nfcore/coproid 1.1.1

A Docker image for the nf-core/coproid pipeline.

ctomlins/mblast latest

nextgenusfs/funannotate-slim v1.8.15

Base funannotate image (no databases)

bactopia/assembly_qc 2.2.0

biocontainers/mitohifi 3.0.0_cv1

bactopia/antimicrobial_resistance 1.7.1

bactopia/tools-roary 1.7.1

bactopia/tools-pirate 1.7.1

bactopia/tools-hicap 1.7.1

bactopia/tools-staph-typer 1.7.1

bactopia/tools-whatsgnu 1.5.x

genomehubs/mitohifi latest

theoaphidian/kraken-bracken latest

A container with all the tools to preprocess metagenome samples with kraken and bracken.

ctomlins/metablast2 latest

gmtscience/kraken2bracken latest

sagnikbanerjee15/codan 1.2

mbwali/jupyterlab qiime2023

doejgi/jaws-blastn 1.0.0

hoonbiolab/vcf-kit v1.1

ddiazescandon/funannotate 1.8.15

nextgenusfs/funannotate:latest with eukaryta db, phyml for dn/ds and a conda installation

jinlongru/protclust v0.1.4

sagnikbanerjee15/busco 5.4.5

plaquette/r_helper dev

helper repo to use certain r packages on a computing node

jimmyliu1326/panx 1.6.0

wangxiugong/midas v.1.0

chriswyatt/diamond latest

chriswyatt/reasonate_env1 latest

bactopia/insertion_sequences 1.3.1

gmtscience/metaphlan4 4.0.6.1

a metaphlan4 docker with humann 3.5 suited for use in scitq or other systems (like nextflow)

sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

veitveit/searchgui 4.2.9--hdfd78af_0

bsceapm/ahatool 2.2

dhintz1/c-wap 0.0.1

chriswyatt/bioseqio_gffread latest

prokan/assemble 0.2.0

staphb/emmtyper latest

shiramaty/qiime2-sratools latest

chriswyatt/genespaces latest

liutiantian/lrgasp_event2_metrics 0.9.1

katharinahoff/response-notebook devel

oxfordmmm/bugflow_amr_finder v0.1.1

sebimer/samba-v4-qiime2 2022.11

emersonchao/dsc180b latest

nanozoo/plannotate 1.2.0--5b46a44

supark87/amrfinder ver1.2

ethill/qiime2 latest

docker container for qiime2

xonq/funannotate latest

denglab/viroprofiler-bracken v0.2

kumalpha/qiime2-core latest

plaquette/prokka_helper centos

https://github.com/plaquette/prokka_container

nanozoo/abritamr 1.0.13--e4b83d1

hoonbiolab/hmftools_sv v.2.13.2

alekosbiofilos/vep lb

spvensko/haplotypetools 1.0

nyuadcorebio/kraken_braken latest

Kraken and Bracken

hbadrane/fungap version3

yingxiaomai/genomeassess v0

pvstodghill/pipeline-genomes 2023-11-21

jodyphelan/dengue-ngs latest

hydragenetics/straglr 1.4.1

shaodongwei/metagenomics v2

gesiscss/binder-r2d-g5b5b759-karkman-2dbinder-5fdemo-a303a2 2b69c0efb07462e8cbca06c8b81ca725e59229d6

lazzarigioele/edacicola latest

zhuzide/phylophlan 3.0.0

epereira/geoblast latest

sridnona/espresso v3

chasemc2/sgnf-sgpy 0.4.2

andrewatmp/testf latest

cgrlab/kraken v2.1.3

ldaveyl/bioinformatics-install-dev 0.1

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

sbouslama/sb-nullarbor alpha1

cjchen/scauclass_2023 1.0

shengqh/cqs_smallrnaseq latest

globusgenomics/picrust 1.0

emvcaest/markerscan latest