Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

yaobio/archr-4g : latest

Docker images for ArchR (Analysis of Regulatory Chromatin in R)

Latest release: over 1 year ago - 11 downloads - 643 dependencies

JSON

Dependencies

nabor 0.5.0
nlme 3.1-155
nnet 7.3-17
openssl 2.0.6
org.testing.db 0.1
parallel 4.1.2
parallelly 1.35.0
patchwork 1.1.2
pbapply 1.7-0
pillar 1.9.0
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
poweRlaw 0.70.6
pracma 2.4.2
praise 1.0.0
presto 1.0.0
prettyunits 1.1.1
processx 3.8.1
profvis 0.3.8
progress 1.2.2
progressr 0.13.0
promises 1.2.0.1
ps 1.7.5
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.4
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.28
rhandsontable 0.3.8
rhdf5 2.38.1
rhdf5filters 1.6.0
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.21
roxygen2 7.2.3
rpart 4.1.16
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.54.0
rversions 2.1.2
sass 0.4.6
scales 1.2.1
scattermore 1.0
gtable 0.3.3
gtools 3.9.4
harmony 0.1.1
here 1.0.1
highr 0.10
hms 1.1.3
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.11
httr2 0.2.3
httr 1.4.6
ica 1.0-3
igraph 1.4.2
ini 0.3.1
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.1
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
listenv 0.9.0
lmtest 0.9-40
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.1.2
mgcv 1.8-39
mime 0.12
miniUI 0.1.1.1
motifmatchr 1.16.0
munsell 0.5.0
sctransform 0.3.5
seqLogo 1.60.0
sessioninfo 1.2.2
shape 1.4.6
shiny 1.7.4
shinythemes 1.2.0
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 1.6-0
spatial 7.3-15
spatstat.data 3.0-1
RSQLite 2.3.1
@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
ArchR 1.0.2
BH 1.81.0-1
BSgenome.Hsapiens.UCSC.hg19 1.4.3
BSgenome.Hsapiens.UCSC.hg38 1.4.4
BSgenome.Mmusculus.UCSC.mm10 1.4.3
BSgenome.Mmusculus.UCSC.mm9 1.4.0
BSgenome 1.62.0
Biobase 2.54.0
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.20
BiocParallel 1.28.3
BiocVersion 3.14.0
Biostrings 2.62.0
CNEr 1.30.0
Cairo 1.6-0
ComplexHeatmap 2.10.0
DBI 1.1.3
DT 0.27
DelayedArray 0.20.0
DirichletMultinomial 1.36.0
FNN 1.1.3.2
GO.db 3.14.0
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicRanges 1.46.1
GetoptLong 1.0.5
GlobalOptions 0.1.2
IRanges 2.28.0
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-55
Matrix 1.4-0
Matrix 1.5-4
MatrixGenerics 1.6.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
ROCR 1.0-11
Rcpp 1.0.10
RcppAnnoy 0.0.20
graphics 4.1.2
grid 4.1.2
gridExtra 2.3
RcppArmadillo 0.12.2.0.0
RcppEigen 0.3.3.9.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
Rhdf5lib 1.16.0
Rhtslib 1.26.0
Rsamtools 2.10.0
Rtsne 0.16
S4Vectors 0.32.4
Seurat 4.3.0
SeuratObject 4.1.3
SummarizedExperiment 1.24.0
TFBSTools 1.32.0
TFMPvalue 0.0.9
XML 3.99-0.14
XVector 0.34.0
abind 1.4-5
annotate 1.72.0
askpass 1.1
base64enc 0.1-3
base 4.1.2
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28
brew 1.0-8
brio 1.1.3
bslib 0.4.2
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
chromVAR 1.16.0
circlize 0.4.15
class 7.3-20
cli 3.6.1
clipr 0.8.0
clue 0.3-64
cluster 2.1.2
codetools 0.2-18
colorspace 2.1-0
commonmark 1.9.0
compiler 4.1.2
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.1.2
deldir 1.0-6
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
doParallel 1.0.17
downlit 0.4.2
dplyr 1.1.2
dqrng 0.3.0
ellipsis 0.3.2
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fitdistrplus 1.1-11
fontawesome 0.5.1
foreach 1.5.2
foreign 0.8-82
formatR 1.14
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.10.0
future 1.32.0
generics 0.1.3
gert 1.9.2
ggplot2 3.4.2
ggrepel 0.9.3
ggridges 0.5.4
gh 1.4.0
gitcreds 0.1.2
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.1.2
spatstat.explore 3.1-0
spatstat.geom 3.2-1
spatstat.random 3.1-5
spatstat.sparse 3.0-1
spatstat.utils 3.0-3
splines 4.1.2
stats4 4.1.2
stats 4.1.2
stringi 1.7.12
stringr 1.5.0
survival 3.2-13
sys 3.4.1
systemfonts 1.0.4
tcltk 4.1.2
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.8
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.45
tools 4.1.2
translations 4.1.2
tzdb 0.4.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.1.2
uwot 0.1.14
vctrs 0.6.2
viridisLite 0.4.2
vroom 1.6.3
waldo 0.5.1
whisker 0.4.1
withr 2.5.0
xfun 0.39
xml2 1.3.4
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.3.0
zlibbioc 1.40.0
zoo 1.8-12

ubuntu/adduser 3.118ubuntu5
ubuntu/apt 2.4.9
ubuntu/base-files 12ubuntu4.3
ubuntu/base-passwd 3.5.52build1
ubuntu/bash 5.1-6ubuntu1
ubuntu/binutils-common 2.38-4ubuntu2.1
ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.1
ubuntu/binutils 2.38-4ubuntu2.1
ubuntu/bsdutils 1:2.37.2-4ubuntu3
ubuntu/build-essential 12.9ubuntu3
ubuntu/bzip2 1.0.8-5build1
ubuntu/ca-certificates 20211016ubuntu0.22.04.1
ubuntu/coreutils 8.32-4.1ubuntu1
ubuntu/cpp-11 11.3.0-1ubuntu1~22.04
ubuntu/cpp 4:11.2.0-1ubuntu1
ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
ubuntu/debconf 1.5.79ubuntu1
ubuntu/debianutils 5.5-1ubuntu2
ubuntu/diffutils 1:3.8-0ubuntu2
ubuntu/dpkg-dev 1.21.1ubuntu2.1
ubuntu/dpkg 1.21.1ubuntu2.1
ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
ubuntu/findutils 4.8.0-1ubuntu3
ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
ubuntu/fontconfig 2.13.1-4.2ubuntu5
ubuntu/fonts-dejavu-core 2.37-2build1
ubuntu/g -11 11.3.0-1ubuntu1~22.04
ubuntu/g 4:11.2.0-1ubuntu1
ubuntu/gcc-11-base 11.3.0-1ubuntu1~22.04
ubuntu/gcc-11 11.3.0-1ubuntu1~22.04
ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
ubuntu/gcc 4:11.2.0-1ubuntu1
ubuntu/gfortran-11 11.3.0-1ubuntu1~22.04
ubuntu/gfortran 4:11.2.0-1ubuntu1
ubuntu/gir1.2-glib-2.0 1.72.0-1
ubuntu/gir1.2-harfbuzz-0.0 2.7.4-1ubuntu3.1
ubuntu/git-man 1:2.34.1-1ubuntu1.9
ubuntu/git 1:2.34.1-1ubuntu1.9
ubuntu/gpgv 2.2.27-3ubuntu2.1
ubuntu/grep 3.7-1build1
ubuntu/gzip 1.10-4ubuntu4.1
ubuntu/hostname 3.23ubuntu2
ubuntu/icu-devtools 70.1-2
ubuntu/init-system-helpers 1.62
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ubuntu/libgcrypt20 1.9.4-3ubuntu3
ubuntu/libgdbm-compat4 1.23-1
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ubuntu/libglib2.0-dev 2.72.4-0ubuntu2
ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
ubuntu/libgnutls30 3.7.3-4ubuntu1.2
ubuntu/libgomp1 12.1.0-2ubuntu1~22.04
ubuntu/libgpg-error0 1.43-3
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ubuntu/libgraphite2-dev 1.3.14-1build2
ubuntu/libgsl-dev 2.7.1 dfsg-3
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ubuntu/libgslcblas0 2.7.1 dfsg-3
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ubuntu/libharfbuzz-gobject0 2.7.4-1ubuntu3.1
ubuntu/libharfbuzz-icu0 2.7.4-1ubuntu3.1
ubuntu/libharfbuzz0b 2.7.4-1ubuntu3.1
ubuntu/libhogweed6 3.7.3-1build2
ubuntu/libice-dev 2:1.0.10-1build2
ubuntu/libice6 2:1.0.10-1build2
ubuntu/libicu-dev 70.1-2
ubuntu/libicu70 70.1-2
ubuntu/libidn2-0 2.3.2-2build1
ubuntu/libisl23 0.24-2build1
ubuntu/libitm1 12.1.0-2ubuntu1~22.04
ubuntu/libjbig-dev 2.1-3.1ubuntu0.22.04.1
ubuntu/libjbig0 2.1-3.1ubuntu0.22.04.1
ubuntu/libjpeg-dev 8c-2ubuntu10
ubuntu/libjpeg-turbo8-dev 2.1.2-0ubuntu1
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ubuntu/libk5crypto3 1.19.2-2ubuntu0.1
ubuntu/libkeyutils1 1.6.1-2ubuntu3
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ubuntu/liblapack3 3.10.0-2ubuntu1
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ubuntu/liblsan0 12.1.0-2ubuntu1~22.04
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ubuntu/liblzma-dev 5.2.5-2ubuntu1
ubuntu/liblzma5 5.2.5-2ubuntu1
ubuntu/liblzo2-2 2.10-2build3
ubuntu/libmd0 1.0.4-1build1
ubuntu/libmount-dev 2.37.2-4ubuntu3
ubuntu/libmount1 2.37.2-4ubuntu3
ubuntu/libmpc3 1.2.1-2build1
ubuntu/libmpdec3 2.5.1-2build2
ubuntu/libmpfr6 4.1.0-3build3
ubuntu/libncurses-dev 6.3-2
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ubuntu/libnghttp2-14 1.43.0-1build3
ubuntu/libnsl-dev 1.3.0-2build2
ubuntu/libnsl2 1.3.0-2build2
ubuntu/libp11-kit0 0.24.0-6build1
ubuntu/libpam-modules-bin 1.4.0-11ubuntu2.3
ubuntu/libpam-modules 1.4.0-11ubuntu2.3
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ubuntu/libpangoft2-1.0-0 1.50.6 ds-2ubuntu1
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ubuntu/libpcre16-3 2:8.39-13ubuntu0.22.04.1
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ubuntu/libpcre3 2:8.39-13ubuntu0.22.04.1
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ubuntu/libpsl5 0.21.0-1.2build2
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ubuntu/libtcl8.6 8.6.12 dfsg-1build1
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ubuntu/libudev1 249.11-0ubuntu3.9
ubuntu/libunistring2 1.0-1
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ubuntu/libwebp7 1.2.2-2
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ubuntu/libx11-data 2:1.7.5-1
ubuntu/libx11-dev 2:1.7.5-1
ubuntu/libxau-dev 1:1.0.9-1build5
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxcb-render0-dev 1.14-3ubuntu3
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ubuntu/libxcb-shm0-dev 1.14-3ubuntu3
ubuntu/libxcb-shm0 1.14-3ubuntu3
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ubuntu/libxcb1 1.14-3ubuntu3
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ubuntu/linux-libc-dev 5.15.0-71.78
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ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/lto-disabled-list 24
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ubuntu/passwd 1:4.8.1-2ubuntu2.1
ubuntu/patch 2.7.6-7build2
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/pkg-config 0.29.2-1ubuntu3
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/python3-distutils 3.10.6-1~22.04
ubuntu/python3-lib2to3 3.10.6-1~22.04
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3.10-minimal 3.10.6-1~22.04.2ubuntu1
ubuntu/python3.10 3.10.6-1~22.04.2ubuntu1
ubuntu/python3 3.10.6-1~22.04
ubuntu/r-base-core 4.1.2-1ubuntu2
ubuntu/r-base-dev 4.1.2-1ubuntu2
ubuntu/r-base 4.1.2-1ubuntu2
ubuntu/r-cran-boot 1.3-28-2
ubuntu/r-cran-class 7.3-20-1
ubuntu/r-cran-cluster 2.1.2-2
ubuntu/r-cran-codetools 0.2-18-1
ubuntu/r-cran-foreign 0.8.82-1
ubuntu/r-cran-kernsmooth 2.23-20-1
ubuntu/r-cran-lattice 0.20-45-1
ubuntu/r-cran-mass 7.3-55-1
ubuntu/r-cran-matrix 1.4-0-1
ubuntu/r-cran-mgcv 1.8-39-1
ubuntu/r-cran-nlme 3.1.155-1
ubuntu/r-cran-nnet 7.3-17-1
ubuntu/r-cran-rpart 4.1.16-1
ubuntu/r-cran-spatial 7.3-15-1
ubuntu/r-cran-survival 3.2-13-1
ubuntu/r-recommended 4.1.2-1ubuntu2
ubuntu/readline-common 8.1.2-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1ubuntu0.1.22.04.1
ubuntu/tzdata 2023c-0ubuntu0.22.04.1
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/uuid-dev 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11proto-dev 2021.5-1
ubuntu/xauth 1:1.1-1build2
ubuntu/xdg-utils 1.1.3-4.1ubuntu3~22.04.1
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtrans-dev 1.4.0-1
ubuntu/xz-utils 5.2.5-2ubuntu1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2