Ecosyste.ms: Docker

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hoonbiolab/pepatac : v1.1

Latest release: about 3 years ago - 43 downloads - 1,213 dependencies

Dependencies

aho-corasick 0.5.3
aho-corasick 0.6.9
ansi_term 0.11.0
assert_cmd 0.4.0
atty 0.2.14
autocfg 0.1.7
bincode 0.5.9
bitflags 0.9.1
bitflags 1.0.4
byteorder 0.5.3
cbindgen 0.13.2
cfg-if 0.1.6
cfg-if 1.0.0
clap 2.33.3
custom_derive 0.1.7
darling 0.12.2
darling_core 0.12.2
darling_macro 0.12.2
difference 2.0.0
docopt 0.6.86
either 1.1.0
escargot 0.2.0
flate2 0.2.18
float-cmp 0.4.0
fnv 1.0.6
fnv 1.0.7
fs_extra 1.1.0
fuchsia-zircon-sys 0.3.3
fuchsia-zircon 0.3.3
gcc 0.3.45
getrandom 0.1.16
hermit-abi 0.1.18
ident_case 1.0.1
idna 0.1.2
ieee754 0.2.2
indexmap 1.3.0
itertools 0.6.0
itoa 0.4.3
kernel32-sys 0.2.2
lazy_static 0.2.6
lazy_static 1.2.0
libc 0.2.92
log 0.4.14
matches 0.1.6
memchr 0.1.11
memchr 2.1.1
miniz-sys 0.1.9
newtype_derive 0.1.6
num-traits 0.1.37
num-traits 0.2.6
percent-encoding 1.0.0
ppv-lite86 0.2.10
predicates 0.5.2
proc-macro2 0.4.24
proc-macro2 1.0.26
proc-macro2 1.0.7
profile 1.0.0
quick-error 1.2.0
quote 0.6.10
quote 1.0.2
quote 1.0.9
rand 0.3.22
rand 0.4.3
rand 0.7.3
rand_chacha 0.2.2
rand_core 0.5.1
rand_hc 0.2.0
redox_syscall 0.1.40
regex-syntax 0.3.9
regex-syntax 0.6.3
regex 0.1.80
regex 1.0.6
remove_dir_all 0.5.1
rust-htslib 0.12.1
rustc-serialize 0.3.23
rustc_version 0.1.7
ryu 0.2.7
semver 0.1.20
seqOutBias 1.3.0
serde 0.7.15
serde 1.0.125
serde 1.0.98
serde_derive 1.0.125
serde_derive 1.0.84
serde_json 1.0.33
serde_json 1.0.34
strsim 0.10.0
strsim 0.5.2
strsim 0.8.0
syn 0.15.24
syn 1.0.13
syn 1.0.68
tempdir 0.3.7
tempfile 2.2.0
tempfile 3.1.0
textwrap 0.11.0
thread-id 2.0.0
thread_local 0.2.7
thread_local 0.3.6
toml 0.5.8
ucd-util 0.1.3
unicode-bidi 0.3.4
unicode-normalization 0.1.5
unicode-width 0.1.8
unicode-xid 0.1.0
unicode-xid 0.2.0
unicode-xid 0.2.1
url 1.7.2
utf8-ranges 0.1.3
utf8-ranges 1.0.2
vec_map 0.8.2
version_check 0.1.5
wasi 0.9.0 wasi-snapshot-preview1
winapi-build 0.1.1
winapi-i686-pc-windows-gnu 0.4.0
winapi-x86_64-pc-windows-gnu 0.4.0
winapi 0.2.8
winapi 0.3.6

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.54.1
AnnotationFilter 1.16.0
AnnotationHub 3.0.1
BH 1.75.0-0
BSgenome 1.60.0
Biobase 2.52.0
BiocFileCache 2.0.0
BiocGenerics 0.38.0
BiocIO 1.2.0
BiocManager 1.30.16
BiocParallel 1.26.1
BiocVersion 3.13.1
Biostrings 2.60.1
DBI 1.1.1
DT 0.18
DelayedArray 0.18.0
ExperimentHub 2.0.0
GenomeInfoDb 1.28.1
GenomeInfoDbData 1.2.6
GenomicAlignments 1.28.0
GenomicDistributions 1.1.4
GenomicFeatures 1.44.0
GenomicRanges 1.44.0
IRanges 2.26.0
KEGGREST 1.32.0
KernSmooth 2.23-20
MASS 7.3-54
Matrix 1.3-4
MatrixGenerics 1.4.0
PEPATACr 0.0.1.0000
ProtGenerics 1.24.0
R6 2.5.0
RColorBrewer 1.1-2
RCurl 1.98-1.3
RSQLite 2.2.7
Rcpp 1.0.7
Rhtslib 1.24.0
Rsamtools 2.8.0
S4Vectors 0.30.0
SummarizedExperiment 1.22.0
XML 3.99-0.6
XVector 0.32.0
argparser 0.7.1
askpass 1.1
assertthat 0.2.1
base64enc 0.1-3
base 3.2.2
base 4.1.0
biomaRt 2.48.2
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.1
boot 1.3-28
brew 1.0-6
brio 1.1.2
bslib 0.2.5.1
caTools 1.18.2
cachem 1.0.5
callr 3.7.0
class 7.3-19
cli 3.0.1
clipr 0.7.1
cluster 2.1.2
codetools 0.2-18
colorspace 2.0-2
commonmark 1.7
compiler 3.2.2
compiler 4.1.0
crayon 1.4.1
credentials 1.3.0
crosstalk 1.1.1
curl 4.3.2
data.table 1.14.0
datasets 3.2.2
datasets 4.1.0
dbplyr 2.1.1
desc 1.3.0
devtools 2.4.2
diffobj 0.3.4
digest 0.6.27
dplyr 1.0.7
ellipsis 0.3.2
ensembldb 2.16.2
evaluate 0.14
fansi 0.5.0
farver 2.1.0
fastmap 1.1.0
filelock 1.0.2
foreign 0.8-81
formatR 1.11
fs 1.5.0
futile.logger 1.4.3
futile.options 1.0.1
generics 0.1.0
gert 1.3.1
ggplot2 3.3.5
ggrepel 0.9.1
gh 1.3.0
gitcreds 0.1.1
glue 1.4.2
gplots 3.1.1
grDevices 3.2.2
grDevices 4.1.0
graphics 3.2.2
graphics 4.1.0
grid 3.2.2
grid 4.1.0
gtable 0.3.0
gtools 3.9.2
highr 0.9
hms 1.1.0
htmltools 0.5.1.1
htmlwidgets 1.5.3
httpuv 1.6.1
httr 1.4.2
ini 0.3.1
interactiveDisplayBase 1.30.0
isoband 0.2.5
jquerylib 0.1.4
jsonlite 1.7.2
knitr 1.33
labeling 0.4.2
lambda.r 1.2.4
later 1.2.0
lattice 0.20-44
lazyeval 0.2.2
lifecycle 1.0.0
magrittr 2.0.1
markdown 1.1
matrixStats 0.59.0
memoise 2.0.0
methods 3.2.2
methods 4.1.0
mgcv 1.8-36
mime 0.11
munsell 0.5.0
nlme 3.1-152
nnet 7.3-16
openssl 1.4.4
optigrab 0.9.2.1
org.testing.db 0.1
parallel 3.2.2
parallel 4.1.0
pepr 0.4.0
pillar 1.6.1
pkgbuild 1.2.0
pkgconfig 2.0.3
pkgload 1.2.1
plogr 0.2.0
plyr 1.8.6
png 0.1-7
praise 1.0.0
preseqR 4.0.0
prettyunits 1.1.1
processx 3.5.2
progress 1.2.2
promises 1.2.0.1
pryr 0.1.4
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
rcmdcheck 1.3.3
rematch2 2.1.2
remotes 2.4.0
reshape2 1.4.4
restfulr 0.0.13
rjson 0.2.20
rlang 0.4.11
roxygen2 7.1.1
rpart 4.1-15
rprojroot 2.0.2
rstudioapi 0.13
rtracklayer 1.52.0
rversions 2.1.1
sass 0.4.0
scales 1.1.1
sessioninfo 1.1.1
shiny 1.6.0
snow 0.4-3
sourcetools 0.1.7
spatial 7.3-11
splines 3.2.2
splines 4.1.0
stats4 3.2.2
stats4 4.1.0
stats 3.2.2
stats 4.1.0
stringi 1.7.3
stringr 1.4.0
survival 3.2-11
sys 3.4
tcltk 3.2.2
tcltk 4.1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.4
tibble 3.1.2
tidyselect 1.1.1
tools 3.2.2
tools 4.1.0
translations 3.2.2
translations 4.1.0
usethis 2.0.1
utf8 1.2.1
utils 3.2.2
utils 4.1.0
vctrs 0.3.8
viridisLite 0.4.0
waldo 0.2.5
whisker 0.4
withr 2.4.2
xfun 0.24
xml2 1.3.2
xopen 1.0.0
xtable 1.8-4
yaml 2.2.1
zip 2.2.0
zlibbioc 1.38.0

piper 0.12.1
pip 20.0.2
pip 21.1.3
pip 21.2.4
Cython 0.29.24
Jinja2 2.11.3
Jinja2 3.0.1
KDEpy 1.1.0
MACS2 2.2.7.1
MACS3 3.0.0a6
MarkupSafe 2.0.1
Pillow 8.3.1
PyGObject 3.36.0
PySocks 1.7.1
PyYAML 5.4.1
Pygments 2.9.0
Sphinx 1.8.5
attmap 0.13.0
attrs 21.2.0
backports.entry-points-selectable 1.1.0
beautifulsoup4 4.10.0
brotlipy 0.7.0
bump2version 0.5.11
certifi 2019.11.28
certifi 2021.5.30
cffi 1.14.6
chardet 3.0.4
chardet 4.0.0
charset-normalizer 2.0.4
codecov 2.1.11
colorama 0.4.4
commonmark 0.9.1
conda-build 3.21.5
conda-package-handling 1.7.3
conda 4.10.3
coverage 4.5.4
coverage 5.5
cryptography 3.4.7
cycler 0.10.0
cykhash 1.0.2
dbus-python 1.2.16
distlib 0.3.2
filelock 3.0.12
flake8 3.7.8
flask 0.10.1
fseq2 2.0.3
future 0.18.2
glob2 0.7
h5py 3.3.0
idna 2.8
idna 3.2
jsonschema 3.2.0
kiwisolver 1.3.1
libarchive-c 2.9
logmuse 0.2.6
matplotlib 3.4.2
numpy 1.21.1
oyaml 1.0
pandas 1.3.0
pararead 0.7.0
patsy 0.5.1
peppy 0.31.1
pip 19.2.3
pkginfo 1.7.1
platformdirs 2.0.2
psutil 5.8.0
pyBigWig 0.3.18
pyOpenSSL 20.0.1
pybedtools 0.8.2
pycosat 0.6.3
pycparser 2.20
pyfaidx 0.6.1
pyparsing 3.0.0b2
pyrsistent 0.18.0
pysam 0.16.0.1
pytest-runner 5.1
pytest-runner 5.3.1
pytest 4.6.5
python-Levenshtein 0.12.2
python-apt 2.0.0 ubuntu0.20.4.4
python-dateutil 2.8.2
pytz 2021.1
refgenconf 0.12.0
refgenie 0.12.0
requests-unixsocket 0.2.0
requests 2.22.0
requests 2.26.0
rich 10.6.0
ruamel-yaml-conda 0.15.100
scipy 1.7.0
setuptools 45.2.0
setuptools 58.0.4
six 1.14.0
six 1.16.0
soupsieve 2.2.1
statsmodels 0.12.2
tox 3.14.0
tqdm 4.62.2
twine 1.14.0
ubiquerg 0.6.1
urllib3 1.25.8
urllib3 1.26.6
virtualenv 20.6.0
watchdog 0.9.0
wheel 0.33.6
wheel 0.34.2
wheel 0.37.0
yacman 0.8.2

bash 5.0.17
python 3.8.12
python 3.9.5