Ecosyste.ms: Docker
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sviatsidorov/granie_analysis : 0.1
Analysis of gliogenesis in a mouse model using GRaNIE
Latest release: over 1 year ago - 70 downloads - 290 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.60.0
- BH 1.81.0-1
- BSgenome.Mmusculus.UCSC.mm10 1.4.3
- BSgenome 1.66.3
- Biobase 2.58.0
- BiocFileCache 2.6.1
- BiocGenerics 0.44.0
- BiocIO 1.8.0
- BiocManager 1.30.19
- BiocParallel 1.32.5
- BiocVersion 3.16.0
- Biostrings 2.66.0
- ChIPseeker 1.34.1
- ComplexHeatmap 2.14.0
- DBI 1.1.3
- DESeq2 1.38.3
- DOSE 3.24.2
- DelayedArray 0.24.0
- GO.db 3.16.0
- GOSemSim 2.24.0
- GRaNIE 1.3.25
- GenomeInfoDb 1.34.9
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.0
- GenomicFeatures 1.50.4
- GenomicRanges 1.50.2
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- HDO.db 0.99.1
- IRanges 2.32.0
- KEGGREST 1.38.0
- KernSmooth 2.23-20
- MASS 7.3-58.1
- Matrix 1.5-1
- MatrixGenerics 1.10.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RSQLite 2.3.0
- Rcpp 1.0.10
- RcppArmadillo 0.12.0.1.0
- RcppEigen 0.3.3.9.3
- Rhtslib 2.0.0
- Rsamtools 2.14.0
- S4Vectors 0.36.1
- SparseM 1.81
- SummarizedExperiment 1.28.0
- TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
- TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0
- XML 3.99-0.13
- XVector 0.38.0
- annotate 1.76.0
- ape 5.7
- aplot 0.1.9
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.2
- biomaRt 2.54.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- boot 1.3-28
- brew 1.0-8
- brio 1.1.3
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.6
- callr 3.7.3
- checkmate 2.1.0
- circlize 0.4.15
- class 7.3-20
- cli 3.6.0
- clipr 0.8.0
- clue 0.3-64
- cluster 2.1.4
- codetools 0.2-18
- colorspace 2.1-0
- commonmark 1.8.1
- compiler 4.2.2
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- curl 5.0.0
- data.table 1.14.8
- datasets 4.2.2
- dbplyr 2.3.0
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.31
- doParallel 1.0.17
- docopt 0.7.1
- downlit 0.4.2
- dplyr 1.1.0
- ellipsis 0.3.2
- enrichplot 1.18.3
- evaluate 0.20
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.0
- fastmatch 1.1-3
- fgsea 1.24.0
- filelock 1.0.2
- fontawesome 0.5.0
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-83
- formatR 1.14
- fs 1.6.1
- futile.logger 1.4.3
- futile.options 1.0.1
- geneplotter 1.76.0
- generics 0.1.3
- gert 1.9.2
- ggforce 0.4.1
- ggfun 0.0.9
- ggnewscale 0.4.8
- ggplot2 3.4.1
- ggplotify 0.1.0
- ggraph 2.1.0
- ggrepel 0.9.3
- ggtree 3.6.2
- gh 1.4.0
- gitcreds 0.1.2
- glue 1.6.2
- gplots 3.1.3
- grDevices 4.2.2
- graph 1.76.0
- graphics 4.2.2
- graphlayouts 0.8.4
- grid 4.2.2
- gridExtra 2.3
- gridGraphics 0.5-1
- gtable 0.3.1
- gtools 3.9.4
- highr 0.10
- hms 1.1.2
- htmltools 0.5.4
- htmlwidgets 1.6.1
- httpuv 1.6.9
- httr2 0.2.2
- httr 1.4.4
- igraph 1.4.0
- ini 0.3.1
- isoband 0.2.7
- iterators 1.0.14
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.20-45
- lazyeval 0.2.2
- lifecycle 1.0.3
- limma 3.54.1
- littler 0.3.17
- locfit 1.5-9.7
- magrittr 2.0.3
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.2.2
- mgcv 1.8-41
- mime 0.12
- miniUI 0.1.1.1
- munsell 0.5.0
- nlme 3.1-160
- nnet 7.3-18
- openssl 2.0.5
- org.Mm.eg.db 3.16.0
- org.testing.db 0.1
- parallel 4.2.2
- patchwork 1.1.2
- pillar 1.8.1
- pkgbuild 1.4.0
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2
- plogr 0.2.0
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.8.0
- profvis 0.3.7
- progress 1.2.2
- promises 1.2.0.1
- ps 1.7.2
- purrr 1.0.1
- qvalue 2.30.0
- ragg 1.2.5
- rappdirs 0.3.3
- rcmdcheck 1.4.0
- readr 2.1.4
- rematch2 2.1.2
- remotes 2.4.2
- reshape2 1.4.4
- restfulr 0.0.15
- rjson 0.2.21
- rlang 1.0.6
- rmarkdown 2.20
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.14
- rtracklayer 1.58.0
- rversions 2.1.2
- sass 0.4.5
- scales 1.2.1
- scatterpie 0.1.8
- sessioninfo 1.2.2
- shadowtext 0.1.2
- shape 1.4.6
- shiny 1.7.4
- snow 0.4-4
- sourcetools 0.1.7-1
- spatial 7.3-15
- splines 4.2.2
- stats4 4.2.2
- stats 4.2.2
- stringi 1.7.12
- stringr 1.5.0
- survival 3.4-0
- sys 3.4.1
- systemfonts 1.0.4
- tcltk 4.2.2
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.6
- textshaping 0.3.6
- tibble 3.1.8
- tidygraph 1.2.3
- tidyr 1.3.0
- tidyselect 1.2.0
- tidytree 0.4.2
- tinytex 0.44
- tools 4.2.2
- topGO 2.50.0
- translations 4.2.2
- treeio 1.22.0
- tweenr 2.0.2
- tzdb 0.3.0
- urlchecker 1.0.1
- usethis 2.1.6
- utf8 1.2.3
- utils 4.2.2
- vctrs 0.5.2
- viridis 0.6.2
- viridisLite 0.4.1
- vroom 1.6.1
- waldo 0.4.0
- whisker 0.4.1
- withr 2.5.0
- xfun 0.37
- xml2 1.3.3
- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- yulab.utils 0.0.6
- zip 2.2.2
- zlibbioc 1.44.0
- github.com/evanw/esbuild v0.0.0-20220830001118-78a1e00b2e69
- golang.org/x/sys v0.0.0-20220715151400-c0bba94af5f8
- stdlib 1.19
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- argparse 1.2.1
- setuptools 44.1.1
- wsgiref 0.1.2