robertplayer/scidap-qiime2 : stable

Latest release: almost 3 years ago - 37 downloads - 527 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
ANCOMBC 2.0.1
BH 1.81.0-1
Biobase 2.58.0
BiocBaseUtils 1.0.0
BiocGenerics 0.44.0
BiocNeighbors 1.16.0
BiocParallel 1.32.5
BiocSingular 1.14.0
Biostrings 2.66.0
CVXR 1.0-11
Cairo 1.6-0
DBI 1.1.3
DECIPHER 2.26.0
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
DescTools 0.99.49
DirichletMultinomial 1.40.0
ECOSolveR 0.5.5
Exact 3.2
FNN 1.1.3.2
Formula 1.2-5
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicRanges 1.50.0
Hmisc 5.1-0
IRanges 2.32.0
MASS 7.3-60
Matrix 1.5-4.1
MatrixGenerics 1.10.0
MultiAssayExperiment 1.24.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
RSpectra 0.16-1
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppML 0.3.7
RcppParallel 5.1.6
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
Rdpack 2.4
RdpackTester 1.0
Rhdf5lib 1.20.0
Rhtslib 2.0.0
Rmpfr 0.9-2
Rsamtools 2.14.0
Rtsne 0.16
S4Vectors 0.36.0
ScaledMatrix 1.6.0
ShortRead 1.56.0
SingleCellExperiment 1.20.0
SummarizedExperiment 1.28.0
TreeSummarizedExperiment 2.6.0
XVector 0.38.0
ade4 1.7-22
ape 5.7-1
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.3
beachmat 2.14.0
beachtest 1.0.0
beeswarm 0.4.0
bibtex 0.5.1
biomformat 1.26.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
broom 1.0.4
bslib 0.4.2
cachem 1.0.8
callr 3.7.3
cellranger 1.1.0
checkmate 2.2.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
compiler 4.2.3
conflicted 1.2.0
cpp11 0.4.3
crayon 1.5.2
curl 4.3.3
dada2 1.26.0
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.2
decontam 1.18.0
deldir 1.0-9
digest 0.6.31
doParallel 1.0.17
doRNG 1.8.6
dplyr 1.1.2
dqrng 0.3.0
dtplyr 1.3.1
e1071 1.7-13
ellipsis 0.3.2
emmeans 1.8.6
energy 1.7-11
estimability 1.4.1
evaluate 0.21
expm 0.999-7
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fontawesome 0.5.1
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
frictionless 1.0.2
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
gbRd 0.4-11
generics 0.1.3
getopt 1.20.3
ggbeeswarm 0.7.2
ggplot2 3.4.2
ggrastr 1.0.1
ggrepel 0.9.3
gld 2.6.6
glue 1.6.2
gmp 0.7-1
googledrive 2.1.0
googlesheets4 1.1.0
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gridExtra 2.3
gsl 2.1-8
gtable 0.3.3
haven 2.5.2
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.5
htmlwidgets 1.6.2
httr 1.4.6
hwriter 1.3.2.1
ids 1.0.1
igraph 1.4.2
interp 1.1-4
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
lattice 0.21-8
latticeExtra 0.6-30
lazyeval 0.2.2
lifecycle 1.0.3
lme4 1.1-33
lmerTest 3.1-3
lmom 2.9
lubridate 1.9.2
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.3
mgcv 1.8-42
mia 1.6.0
mime 0.12
minqa 1.2.5
modelr 0.1.11
morebeach 1.0.0
morebeachtests 1.0.0
multtest 2.54.0
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-162
nloptr 2.0.3
nnet 7.3-19
numDeriv 2016.8-1.1
openssl 2.0.6
optparse 1.7.3
osqp 0.6.0.8
parallel 4.2.3
permute 0.9-7
pheatmap 1.0.12
phyloseq 1.42.0
pillar 1.9.0
pixmap 0.4-12
pkgconfig 2.0.3
pkgmaker 0.32.10
plogr 0.2.0
plyr 1.8.8
png 0.1-8
prettyunits 1.1.1
processx 3.8.1
progress 1.2.2
proxy 0.4-27
ps 1.7.5
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
rbibutils 2.2.13
readr 2.1.4
readxl 1.4.2
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
reshape2 1.4.4
rhdf5 2.42.0
rhdf5filters 1.10.0
rlang 1.1.1
rmarkdown 2.21
rngtools 1.5.2
rootSolve 1.8.2.3
rpart 4.1.19
rstudioapi 0.14
rsvd 1.0.5
rvest 1.0.3
sass 0.4.6
scales 1.2.1
scater 1.26.0
scs 3.2.4
scuttle 1.8.0
selectr 0.4-2
sitmo 2.0.2
snow 0.4-4
sp 1.6-0
sparseMatrixStats 1.10.0
splines 4.2.3
statmod 1.5.0
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-5
sys 3.4.2
systemfonts 1.0.4
tcltk 4.2.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.4.2
tidyverse 2.0.0
timechange 0.2.0
tinytex 0.45
tools 4.2.3
translations 4.2.3
treeio 1.22.0
tzdb 0.4.0
utf8 1.2.3
utils 4.2.3
uuid 1.1-0
uwot 0.1.14
vctrs 0.6.2
vegan 2.6-4
vipor 0.4.5
viridis 0.6.3
viridisLite 0.4.1
vroom 1.6.3
withr 2.5.0
xfun 0.39
xml2 1.3.4
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.6
zlibbioc 1.44.0

debian/adduser 3.118
debian/apt 2.2.4
debian/base-files 11.1 deb11u3
debian/base-passwd 3.5.51
debian/bash 5.1-2 b3
debian/bsdutils 1:2.36.1-8 deb11u1
debian/bzip2 1.0.8-4
debian/ca-certificates 20210119
debian/coreutils 8.32-4 b1
debian/dash 0.5.11 git20200708 dd9ef66-5
debian/debconf 1.5.77
debian/debian-archive-keyring 2021.1.1
debian/debianutils 4.11.2
debian/diffutils 1:3.7-5
debian/dpkg 1.20.10
debian/e2fsprogs 1.46.2-2
debian/findutils 4.8.0-1
debian/gcc-10-base 10.2.1-6
debian/gcc-9-base 9.3.0-22
debian/git-man 1:2.30.2-1
debian/git 1:2.30.2-1
debian/gpgv 2.2.27-2 deb11u1
debian/grep 3.6-1
debian/gzip 1.10-4 deb11u1
debian/hostname 3.23
debian/init-system-helpers 1.60
debian/libacl1 2.2.53-10
debian/libapr1 1.7.0-6 deb11u1
debian/libaprutil1 1.6.1-5
debian/libapt-pkg6.0 2.2.4
debian/libattr1 1:2.4.48-6
debian/libaudit-common 1:3.0-2
debian/libaudit1 1:3.0-2
debian/libblkid1 2.36.1-8 deb11u1
debian/libbrotli1 1.0.9-2 b2
debian/libbsd0 0.11.3-1
debian/libbz2-1.0 1.0.8-4
debian/libc-bin 2.31-13 deb11u3
debian/libc6 2.31-13 deb11u3
debian/libcap-ng0 0.7.9-2.2 b1
debian/libcbor0 0.5.0 dfsg-2
debian/libcom-err2 1.46.2-2
debian/libcrypt1 1:4.4.18-4
debian/libcurl3-gnutls 7.74.0-1.3 deb11u1
debian/libdb5.3 5.3.28 dfsg1-0.8
debian/libdebconfclient0 0.260
debian/libedit2 3.1-20191231-2 b1
debian/liberror-perl 0.17029-1
debian/libexpat1 2.2.10-2 deb11u3
debian/libext2fs2 1.46.2-2
debian/libffi7 3.3-6
debian/libfido2-1 1.6.0-2
debian/libgcc-s1 10.2.1-6
debian/libgcrypt20 1.8.7-6
debian/libgdbm-compat4 1.19-2
debian/libgdbm6 1.19-2
debian/libglib2.0-0 2.66.8-1
debian/libgmp10 2:6.2.1 dfsg-1 deb11u1
debian/libgnutls30 3.7.1-5
debian/libgpg-error0 1.38-2
debian/libgssapi-krb5-2 1.18.3-6 deb11u1
debian/libhogweed6 3.7.3-1
debian/libice6 2:1.0.10-1
debian/libidn2-0 2.3.0-5
debian/libk5crypto3 1.18.3-6 deb11u1
debian/libkeyutils1 1.6.1-2
debian/libkrb5-3 1.18.3-6 deb11u1
debian/libkrb5support0 1.18.3-6 deb11u1
debian/libldap-2.4-2 2.4.57 dfsg-3 deb11u1
debian/liblz4-1 1.9.3-2
debian/liblzma5 5.2.5-2.1~deb11u1
debian/libmd0 1.0.3-3
debian/libmount1 2.36.1-8 deb11u1
debian/libmpdec3 2.5.1-1
debian/libncurses6 6.2 20201114-2
debian/libncursesw6 6.2 20201114-2
debian/libnettle8 3.7.3-1
debian/libnghttp2-14 1.43.0-1
debian/libnsl2 1.3.0-2
debian/libp11-kit0 0.23.22-1
debian/libpam-modules-bin 1.4.0-9 deb11u1
debian/libpam-modules 1.4.0-9 deb11u1
debian/libpam-runtime 1.4.0-9 deb11u1
debian/libpam0g 1.4.0-9 deb11u1
debian/libpcre2-8-0 10.36-2
debian/libpcre3 2:8.39-13
debian/libperl5.32 5.32.1-4 deb11u2
debian/libprocps8 2:3.3.17-5
debian/libpsl5 0.21.0-1.2
debian/libpython3-stdlib 3.9.2-3
debian/libpython3.9-minimal 3.9.2-1
debian/libpython3.9-stdlib 3.9.2-1
debian/libreadline8 8.1-1
debian/librtmp1 2.4 20151223.gitfa8646d.1-2 b2
debian/libsasl2-2 2.1.27 dfsg-2.1 deb11u1
debian/libsasl2-modules-db 2.1.27 dfsg-2.1 deb11u1
debian/libseccomp2 2.5.1-1 deb11u1
debian/libselinux1 3.1-3
debian/libsemanage-common 3.1-1
debian/libsemanage1 3.1-1 b2
debian/libsepol1 3.1-1
debian/libserf-1-1 1.3.9-10
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.36.1-8 deb11u1
debian/libsqlite3-0 3.34.1-3
debian/libss2 1.46.2-2
debian/libssh2-1 1.9.0-2
debian/libssl1.1 1.1.1n-0 deb11u2
debian/libstdc 6 10.2.1-6
debian/libsvn1 1.14.1-3 deb11u1
debian/libsystemd0 247.3-7
debian/libtasn1-6 4.16.0-2
debian/libtinfo6 6.2 20201114-2
debian/libtirpc-common 1.3.1-1
debian/libtirpc3 1.3.1-1
debian/libudev1 247.3-7
debian/libunistring2 0.9.10-4
debian/libutf8proc2 2.5.0-1
debian/libuuid1 2.36.1-8 deb11u1
debian/libx11-6 2:1.7.2-1
debian/libx11-data 2:1.7.2-1
debian/libxau6 1:1.0.9-1
debian/libxcb1 1.14-3
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1.1
debian/libxrender1 1:0.9.10-1
debian/libxxhash0 0.8.0-2
debian/libzstd1 1.4.8 dfsg-2.1
debian/login 1:4.8.1-1
debian/logsave 1.46.2-2
debian/lsb-base 11.1.0
debian/mawk 1.3.4.20200120-2
debian/media-types 4.0.0
debian/mercurial-common 5.6.1-4
debian/mercurial 5.6.1-4
debian/mount 2.36.1-8 deb11u1
debian/ncurses-base 6.2 20201114-2
debian/ncurses-bin 6.2 20201114-2
debian/openssh-client 1:8.4p1-5
debian/openssl 1.1.1n-0 deb11u2
debian/passwd 1:4.8.1-1
debian/perl-base 5.32.1-4 deb11u2
debian/perl-modules-5.32 5.32.1-4 deb11u2
debian/perl 5.32.1-4 deb11u2
debian/procps 2:3.3.17-5
debian/python3-minimal 3.9.2-3
debian/python3.9-minimal 3.9.2-1
debian/python3.9 3.9.2-1
debian/python3 3.9.2-3
debian/readline-common 8.1-1
debian/sed 4.7-1
debian/sensible-utils 0.0.14
debian/subversion 1.14.1-3 deb11u1
debian/sysvinit-utils 2.96-7 deb11u1
debian/tar 1.34 dfsg-1
debian/tzdata 2021a-1 deb11u3
debian/ucf 3.0043
debian/util-linux 2.36.1-8 deb11u1
debian/wget 1.21-1 deb11u1
debian/x11-common 1:7.7 22
debian/zlib1g 1:1.2.11.dfsg-2 deb11u1

java 17.0.3-internal 0-adhoc..src
openssl 3.1.0
python 3.8.16
python 3.9.12

command-line-arguments (devel)
edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7
stdlib 1.17
stdlib 1.19.3

commons-beanutils:commons-beanutils 1.8.3
commons-collections:commons-collections 3.2.1
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
jrt-fs:jrt-fs 17.0.3-internal
net.sf.ezmorph:ezmorph 1.0.6
seppJsonMerger:seppJsonMerger *

@jupyter-widgets/jupyterlab-manager 5.0.7
bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
debug 3.2.6
js 1.0.0
jupyterlab_pygments 0.2.2
license-checker 25.0.1
nopt 4.0.1
spdx-license-ids 3.0.5
validate-npm-package-license 3.0.4

mypy 0.902
q2-alignment 2023.5.0
q2-composition 2023.5.0
q2-cutadapt 2023.5.1
q2-dada2 2023.5.0
q2-deblur 2023.5.0
q2-demux 2023.5.0
q2-diversity-lib 2023.5.0
q2-diversity 2023.5.1
q2-emperor 2023.5.0
q2-feature-classifier 2023.5.0
q2-feature-table 2023.5.0
q2-fragment-insertion 2023.5.0
q2-gneiss 2023.5.0
q2-longitudinal 2023.5.0
q2-metadata 2023.5.0
q2-phylogeny 2023.5.0
q2-quality-control 2023.5.0
q2-quality-filter 2023.5.0
q2-sample-classifier 2023.5.0
q2-taxa 2023.5.0
q2-types 2023.5.0
q2-vsearch 2023.5.0
q2cli 2023.5.1

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robertplayer/scidap-qiime2 : stable

Dependencies