Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

nfcore/scrnaseq : dev

A Docker Container for the nf-core/scrnaseq pipeline.

Latest release: almost 4 years ago - 7,787 downloads - 423 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.48.0
AnnotationFilter 1.10.0
BH 1.75.0-0
Biobase 2.46.0
BiocFileCache 1.10.0
BiocGenerics 0.32.0
BiocParallel 1.20.0
Biostrings 2.54.0
DBI 1.1.1
DT 0.18
DelayedArray 0.12.0
GGally 2.1.1
GenomeInfoDb 1.22.0
GenomeInfoDbData 1.2.2
GenomicAlignments 1.22.0
GenomicFeatures 1.38.0
GenomicRanges 1.38.0
IRanges 2.20.0
KernSmooth 2.23-18
MASS 7.3-53.1
Matrix 1.3-2
ProtGenerics 1.18.0
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.10.1
R6 2.5.0
RANN 2.6.1
RColorBrewer 1.1-2
RCurl 1.98-1.3
ROCR 1.0-11
RSQLite 2.2.5
Rcpp 1.0.6
RcppArmadillo 0.10.4.0.0
RcppEigen 0.3.3.9.1
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
Rdpack 2.1.1
RdpackTester 1.0
Rhtslib 1.18.0
Rsamtools 2.2.0
Rtsne 0.15
S4Vectors 0.24.0
SDMTools 1.1-221.2
Seurat 3.0.2
SingleCellExperiment 1.8.0
SummarizedExperiment 1.16.0
XML 3.99-0.3
XVector 0.26.0
alevinQC 1.2.0
ape 5.5
askpass 1.1
assertthat 0.2.1
backports 1.2.1
base64enc 0.1-3
base 3.6.3
biomaRt 2.42.0
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.1
brio 1.1.2
bslib 0.2.4
caTools 1.18.2
cachem 1.0.4
callr 3.7.0
cli 2.5.0
cluster 2.1.0
codetools 0.2-18
colorspace 2.0-0
colourpicker 1.1.0
commonmark 1.7
compiler 3.6.3
cowplot 1.1.1
crayon 1.4.1
crosstalk 1.1.1
curl 4.3
data.table 1.14.0
datasets 3.6.3
dbplyr 2.1.1
desc 1.3.0
diffobj 0.3.3
digest 0.6.27
dplyr 1.0.5
ellipsis 0.3.1
ensembldb 2.10.0
evaluate 0.14
fansi 0.4.2
farver 2.1.0
fastmap 1.1.0
fitdistrplus 1.1-3
forcats 0.5.1
formatR 1.9
fs 1.5.0
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.7.0
future 1.21.0
gbRd 0.4-11
generics 0.1.0
ggplot2 3.3.3
ggrepel 0.9.1
ggridges 0.5.3
globals 0.14.0
glue 1.4.2
gplots 3.1.1
grDevices 3.6.3
graphics 3.6.3
grid 3.6.3
gridExtra 2.3
gtable 0.3.0
gtools 3.8.2
hexbin 1.28.1
highr 0.9
hms 1.0.0
htmltools 0.5.1.1
htmlwidgets 1.5.3
httpuv 1.6.0
httr 1.4.2
iSEE 1.6.0
ica 1.0-2
igraph 1.2.6
irlba 2.3.3
isoband 0.2.4
jquerylib 0.1.4
jsonlite 1.7.2
knitr 1.31
labeling 0.4.2
lambda.r 1.2.4
later 1.2.0
lattice 0.20-41
lazyeval 0.2.2
lifecycle 1.0.0
listenv 0.8.0
lmtest 0.9-38
lsei 1.3-0
magrittr 2.0.1
markdown 1.1
matrixStats 0.58.0
memoise 2.0.0
metap 1.1
methods 3.6.3
mgcv 1.8-34
mime 0.10
miniUI 0.1.1.1
munsell 0.5.0
nlme 3.1-150
npsurv 0.5-0
openssl 1.4.3
org.testing.db 0.1
parallel 3.6.3
parallelly 1.24.0
pbapply 1.4-3
pillar 1.6.0
pkgconfig 2.0.3
pkgload 1.2.1
plogr 0.2.0
plotly 4.9.3
plyr 1.8.6
png 0.1-7
praise 1.0.0
prettyunits 1.1.1
processx 3.5.1
progress 1.2.2
promises 1.2.0.1
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
rbibutils 2.1
rematch2 2.1.2
rentrez 1.2.3
reshape2 1.4.4
reshape 0.8.8
reticulate 1.18
rintrojs 0.2.2
rjson 0.2.20
rlang 0.4.10
rmarkdown 2.7
rprojroot 2.0.2
rstudioapi 0.13
rsvd 1.0.3
rtracklayer 1.46.0
sass 0.3.1
scales 1.1.1
sctransform 0.3.2
shiny 1.6.0
shinyAce 0.4.1
shinydashboard 0.7.1
shinyjs 2.0.0
snow 0.4-3
sourcetools 0.1.7
splines 3.6.3
stats4 3.6.3
stats 3.6.3
stringi 1.4.6
stringr 1.4.0
survival 3.2-11
sys 3.4
tcltk 3.6.3
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.2
tibble 3.1.1
tidyr 1.1.3
tidyselect 1.1.0
tinytex 0.31
tools 3.6.3
translations 3.6.3
tsne 0.1-3
tximeta 1.4.0
tximport 1.14.0
utf8 1.2.1
utils 3.6.3
vctrs 0.3.7
vipor 0.4.5
viridisLite 0.4.0
waldo 0.2.5
withr 2.4.2
xfun 0.20
xml2 1.3.2
xtable 1.8-4
yaml 2.2.1
zeallot 0.1.0
zlibbioc 1.32.0
zoo 1.8-9

debian/adduser 3.118
debian/apt 1.8.2.1
debian/base-files 10.3 deb10u6
debian/base-passwd 3.5.46
debian/bash 5.0-4
debian/bsdutils 1:2.33.1-0.1
debian/bzip2 1.0.6-9.2~deb10u1
debian/ca-certificates 20200601~deb10u1
debian/coreutils 8.30-3
debian/dash 0.5.10.2-5
debian/debconf 1.5.71
debian/debian-archive-keyring 2019.1
debian/debianutils 4.8.6.1
debian/diffutils 1:3.7-3
debian/dpkg 1.19.7
debian/e2fsprogs 1.44.5-1 deb10u3
debian/fdisk 2.33.1-0.1
debian/file 1:5.35-4 deb10u1
debian/findutils 4.6.0 git 20190209-2
debian/gcc-8-base 8.3.0-6
debian/git-man 1:2.20.1-2 deb10u3
debian/git 1:2.20.1-2 deb10u3
debian/gpgv 2.2.12-1 deb10u1
debian/grep 3.3-1
debian/gzip 1.9-3
debian/hostname 3.21
debian/init-system-helpers 1.56 nmu1
debian/krb5-locales 1.17-3 deb10u1
debian/less 487-0.1 b1
debian/libacl1 2.2.53-4
debian/libapr1 1.6.5-1 b1
debian/libaprutil1 1.6.1-4
debian/libapt-pkg5.0 1.8.2.1
debian/libatomic1 8.3.0-6
debian/libattr1 1:2.4.48-4
debian/libaudit-common 1:2.8.4-3
debian/libaudit1 1:2.8.4-3
debian/libbibutils6 6.2-1
debian/libblkid1 2.33.1-0.1
debian/libbsd0 0.9.1-2
debian/libbz2-1.0 1.0.6-9.2~deb10u1
debian/libc-bin 2.28-10
debian/libc6 2.28-10
debian/libcap-ng0 0.7.9-2
debian/libcom-err2 1.44.5-1 deb10u3
debian/libcurl3-gnutls 7.64.0-4 deb10u1
debian/libdb5.3 5.3.28 dfsg1-0.5
debian/libdebconfclient0 0.249
debian/libedit2 3.1-20181209-1
debian/liberror-perl 0.17027-2
debian/libexpat1 2.2.6-2 deb10u1
debian/libext2fs2 1.44.5-1 deb10u3
debian/libfdisk1 2.33.1-0.1
debian/libffi6 3.2.1-9
debian/libgcc1 1:8.3.0-6
debian/libgcrypt20 1.8.4-5
debian/libgdbm-compat4 1.18.1-4
debian/libgdbm6 1.18.1-4
debian/libghc-pandoc-citeproc-data 0.14.3.1-4
debian/libglib2.0-0 2.58.3-2 deb10u2
debian/libglib2.0-data 2.58.3-2 deb10u2
debian/libgmp10 2:6.1.2 dfsg-4
debian/libgnutls30 3.6.7-4 deb10u5
debian/libgpg-error0 1.35-1
debian/libgpm2 1.20.7-5
debian/libgssapi-krb5-2 1.17-3 deb10u1
debian/libhogweed4 3.4.1-1
debian/libice6 2:1.0.9-2
debian/libicu63 63.1-6 deb10u1
debian/libidn2-0 2.0.5-1 deb10u1
debian/libk5crypto3 1.17-3 deb10u1
debian/libkeyutils1 1.6-6
debian/libkrb5-3 1.17-3 deb10u1
debian/libkrb5support0 1.17-3 deb10u1
debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u4
debian/libldap-common 2.4.47 dfsg-3 deb10u4
debian/liblua5.1-0 5.1.5-8.1 b2
debian/liblz4-1 1.8.3-1
debian/liblzma5 5.2.4-1
debian/libmagic-mgc 1:5.35-4 deb10u1
debian/libmagic1 1:5.35-4 deb10u1
debian/libmount1 2.33.1-0.1
debian/libncurses6 6.1 20181013-2 deb10u2
debian/libncursesw6 6.1 20181013-2 deb10u2
debian/libnettle6 3.4.1-1
debian/libnghttp2-14 1.36.0-2 deb10u1
debian/libp11-kit0 0.23.15-2
debian/libpam-modules-bin 1.3.1-5
debian/libpam-modules 1.3.1-5
debian/libpam-runtime 1.3.1-5
debian/libpam0g 1.3.1-5
debian/libpcre2-8-0 10.32-5
debian/libpcre3 2:8.39-12
debian/libperl5.28 5.28.1-6 deb10u1
debian/libprocps7 2:3.3.15-2
debian/libpsl5 0.20.2-2
debian/libpython-stdlib 2.7.16-1
debian/libpython2-stdlib 2.7.16-1
debian/libpython2.7-minimal 2.7.16-2 deb10u1
debian/libpython2.7-stdlib 2.7.16-2 deb10u1
debian/libreadline7 7.0-5
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u1
debian/libsasl2-modules 2.1.27 dfsg-1 deb10u1
debian/libseccomp2 2.3.3-4
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-2
debian/libsemanage1 2.8-2
debian/libsepol1 2.8-1
debian/libserf-1-1 1.3.9-7 b10
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.33.1-0.1
debian/libsqlite3-0 3.27.2-3 deb10u1
debian/libss2 1.44.5-1 deb10u3
debian/libssh2-1 1.8.0-2.1
debian/libssl1.1 1.1.1d-0 deb10u3
debian/libstdc 6 8.3.0-6
debian/libsvn1 1.10.4-1 deb10u1
debian/libsystemd0 241-7~deb10u4
debian/libtasn1-6 4.13-3
debian/libtbb2 2018~U6-4
debian/libtinfo6 6.1 20181013-2 deb10u2
debian/libudev1 241-7~deb10u4
debian/libunistring2 0.9.10-1
debian/libutf8proc2 2.3.0-1
debian/libuuid1 2.33.1-0.1
debian/libx11-6 2:1.6.7-1 deb10u1
debian/libx11-data 2:1.6.7-1 deb10u1
debian/libxau6 1:1.0.8-1 b2
debian/libxcb1 1.13.1-2
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxml2 2.9.4 dfsg1-7 deb10u1
debian/libxmuu1 2:1.1.2-2 b3
debian/libxrender1 1:0.9.10-1
debian/libyaml-0-2 0.2.1-1
debian/libzstd1 1.3.8 dfsg-3
debian/login 1:4.5-1.1
debian/lsb-base 10.2019051400
debian/mawk 1.3.3-17 b3
debian/mercurial-common 4.8.2-1 deb10u1
debian/mercurial 4.8.2-1 deb10u1
debian/mime-support 3.62
debian/mount 2.33.1-0.1
debian/ncurses-base 6.1 20181013-2 deb10u2
debian/ncurses-bin 6.1 20181013-2 deb10u2
debian/netbase 5.6
debian/openssh-client 1:7.9p1-10 deb10u2
debian/openssl 1.1.1d-0 deb10u3
debian/pandoc-citeproc 0.14.3.1-4 b3
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3 deb10u1
debian/perl-base 5.28.1-6 deb10u1
debian/perl-modules-5.28 5.28.1-6 deb10u1
debian/perl 5.28.1-6 deb10u1
debian/procps 2:3.3.15-2
debian/psmisc 23.2-1
debian/publicsuffix 20190415.1030-1
debian/python-minimal 2.7.16-1
debian/python2-minimal 2.7.16-1
debian/python2.7-minimal 2.7.16-2 deb10u1
debian/python2.7 2.7.16-2 deb10u1
debian/python2 2.7.16-1
debian/python 2.7.16-1
debian/readline-common 7.0-5
debian/sed 4.7-1
debian/sensible-utils 0.0.12
debian/shared-mime-info 1.10-1
debian/subversion 1.10.4-1 deb10u1
debian/sysvinit-utils 2.93-8
debian/tar 1.30 dfsg-6
debian/tzdata 2020d-0 deb10u1
debian/ucf 3.0038 nmu1
debian/util-linux 2.33.1-0.1
debian/wget 1.20.1-1.1
debian/x11-common 1:7.7 19
debian/xauth 1:1.0.10-1
debian/xdg-user-dirs 0.17-2
debian/xz-utils 5.2.4-1
debian/zlib1g 1:1.2.11.dfsg-1

python 3.7.3
python 3.8.5

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.2.0
bootstrap-sass 3.4.1
bootstrap 4.5.3
bootswatch 3.4.1
bootswatch 4.5.3
jquery-ui 1.12.1
jquery 3.5.1
popper.js 1.16.1