prismcmap/sushi : develop

Latest release: about 4 years ago - 1,518 downloads - 723 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.52.0
BH 1.81.0-1
Biobase 2.50.0
BiocGenerics 0.36.1
BiocManager 1.30.20
BiocParallel 1.24.1
BiocVersion 3.12.0
Biostrings 2.58.0
DBI 1.1.3
DT 0.17
DelayedArray 0.16.3
Formula 1.2-4
GO.db 3.12.1
GenomeInfoDb 1.26.7
GenomeInfoDbData 1.2.4
GenomicAlignments 1.26.0
GenomicRanges 1.42.0
Hmisc 4.4-2
IRanges 2.24.1
KernSmooth 2.23-21
MASS 7.3-60
Matrix 1.5-4
MatrixGenerics 1.2.1
PRROC 1.3.1
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
Rcpp 1.0.10
RcppArmadillo 0.10.2.1.0
RcppEigen 0.3.3.9.3
RcppNumerical 0.5-0
Rdpack 2.4
RdpackTester 1.0
Rhtslib 1.22.0
Rsamtools 2.6.0
S4Vectors 0.28.1
SQUAREM 2021.1
ShortRead 1.48.0
SummarizedExperiment 1.20.0
TSP 1.1-10
WGCNA 1.69
XML 3.99-0.14
XVector 0.30.0
annotate 1.68.0
apeglm 1.12.0
argparse 2.2.2
ashr 2.2-47
askpass 1.1
grid 4.0.3
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.0.3
bbmle 1.0.25
bdsmatrix 1.3-6
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brew 1.0-6
brio 1.1.1
broom 1.0.4
bslib 0.4.2
caTools 1.18.1
cachem 1.0.8
callr 3.7.3
cdsrbiomarker 0.1.0
cdsrmodels 0.1.0
cellranger 1.1.0
checkmate 2.0.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
coda 0.19-4
codetools 0.2-19
colorspace 2.1-0
commonmark 1.7
compiler 4.0.3
conflicted 1.2.0
corpcor 1.6.9
covr 3.5.1
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.0
crosstalk 1.1.1
curl 5.0.0
data.table 1.14.8
datasets 4.0.3
dbplyr 2.3.2
deldir 1.0-6
dendextend 1.14.0
desc 1.2.0
devtools 2.3.2
diffobj 0.3.3
digest 0.6.31
doParallel 1.0.16
docopt 0.7.1
downlit 0.2.1
dplyr 1.1.2
dr4pl 2.0.0
dtplyr 1.3.1
dynamicTreeCut 1.63-1
egg 0.4.5
ellipsis 0.3.2
emdbook 1.3.12
etrunct 0.1
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastcluster 1.1.25
fastmap 1.1.1
findpython 1.0.8
fontawesome 0.5.1
forcats 1.0.0
foreach 1.5.1
foreign 0.8-84
formatR 1.14
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
gausscov 0.0.12
gclus 1.3.2
gdata 2.18.0.1
genefilter 1.72.1
generics 0.1.3
gert 1.1.0
ggplot2 3.4.2
gh 1.2.0
gitcreds 0.1.1
glue 1.6.2
gmodels 2.18.1.1
googledrive 2.1.0
googlesheets4 1.1.0
gplots 3.1.1
grDevices 4.0.3
graphics 4.0.3
gridExtra 2.3
gtable 0.3.3
gtools 3.9.4
hash 2.2.6.1
haven 2.5.2
hdf5r 1.3.8
heatmaply 1.2.1
here 1.0.1
highr 0.10
hms 1.1.3
htmlTable 2.1.0
htmltools 0.5.5
htmlwidgets 1.5.3
httr 1.4.5
hwriter 1.3.2.1
ids 1.0.1
impute 1.64.0
ini 0.3.1
interp 1.1-4
invgamma 1.1
irlba 2.3.3
isoband 0.2.7
iterators 1.0.13
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.1.0.1
lattice 0.21-8
latticeExtra 0.6-30
lazyeval 0.2.2
leaflet.providers 1.9.0
leaflet 2.0.4.1
lifecycle 1.0.3
limma 3.46.0
littler 0.3.18
lubridate 1.9.2
magrittr 2.0.3
markdown 1.1
matrixStats 0.63.0
memoise 2.0.1
methods 4.0.3
mgcv 1.8-42
mime 0.12
mixsqp 0.3-43
modelr 0.1.11
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-162
nnet 7.3-19
numDeriv 2016.8-1.1
openssl 2.0.6
org.testing.db 0.1
packrat 0.5.0
parallel 4.0.3
pillar 1.9.0
pkgbuild 1.2.0
pkgconfig 2.0.3
pkgdown 1.6.1
pkgload 1.1.0
plogr 0.2.0
plotly 4.9.3
plyr 1.8.8
png 0.1-8
praise 1.0.0
preprocessCore 1.52.1
prettyunits 1.1.1
prismSeqR 0.1.0
processx 3.8.1
progress 1.2.2
promises 1.1.1
ps 1.7.5
purrr 1.0.1
qap 0.1-1
ragg 0.4.1
ranger 0.12.1
rappdirs 0.3.3
raster 3.4-5
rbibutils 2.2.13
rcmdcheck 1.3.3
readr 2.1.4
readxl 1.4.2
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
remotes 2.2.0
reprex 2.0.2
reshape2 1.4.4
rex 1.2.0
rlang 1.1.1
rmarkdown 2.21
roxygen2 7.1.1
rpart 4.1.19
rprojroot 2.0.2
rsconnect 0.8.16
rstudioapi 0.14
rticles 0.18
rversions 2.0.2
rvest 1.0.3
sass 0.4.6
scales 1.2.1
scam 1.2-14
selectr 0.4-2
seriation 1.2-9
sessioninfo 1.1.1
sets 1.0-18
snow 0.4-4
sp 1.4-5
spatial 7.3-16
splines 4.0.3
splitstackshape 1.4.8
stats4 4.0.3
stats 4.0.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-5
sys 3.4.1
systemfonts 1.0.4
taigr 2.8.2
tcltk 4.0.3
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.1
textshaping 0.3.0
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 1.3.0
timechange 0.2.0
tinytex 0.45
tools 4.0.3
translations 4.0.3
truncnorm 1.0-8
tzdb 0.3.0
useful 1.2.6
usethis 2.0.1
utf8 1.2.3
utils 4.0.3
uuid 1.1-0
vctrs 0.6.2
viridis 0.5.1
viridisLite 0.4.2
vroom 1.6.3
waldo 0.2.3
webshot 0.5.2
whisker 0.4
withr 2.5.0
xfun 0.39
xml2 1.3.4
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.1.1
zlibbioc 1.36.0

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ubuntu/libsensors5 1:3.6.0-2ubuntu1.1
ubuntu/libsepol1-dev 3.0-1ubuntu0.1
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsm-dev 2:1.2.3-1
ubuntu/libsm6 2:1.2.3-1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsnappy1v5 1.1.8-1build1
ubuntu/libsqlite0-dev 2.8.17-15fakesync1build1
ubuntu/libsqlite0 2.8.17-15fakesync1build1
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssh2-1-dev 1.8.0-2.1build1
ubuntu/libssh2-1 1.8.0-2.1build1
ubuntu/libssl-dev 1.1.1f-1ubuntu2.18
ubuntu/libssl1.1 1.1.1f-1ubuntu2.18
ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.21
ubuntu/libsz2 1.0.4-1
ubuntu/libtasn1-6-dev 4.16.0-2
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libthai-data 0.1.28-3
ubuntu/libthai0 0.1.28-3
ubuntu/libtiff-doc 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtiff-opengl 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtiff-tools 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtiff5 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtiffxx5 4.1.0 git191117-2ubuntu0.20.04.8
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libtsan0 10.3.0-1ubuntu1~20.04
ubuntu/libturbojpeg 2.0.3-0ubuntu1.20.04.3
ubuntu/libubsan1 10.3.0-1ubuntu1~20.04
ubuntu/libudev1 245.4-4ubuntu3.21
ubuntu/libunbound8 1.9.4-2ubuntu1.4
ubuntu/libunistring2 0.9.10-2
ubuntu/libuuid1 2.34-0.1ubuntu9.3
ubuntu/libvulkan1 1.2.131.2-1
ubuntu/libwebp6 0.6.1-2ubuntu0.20.04.1
ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libx11-6 2:1.6.9-2ubuntu1.2
ubuntu/libx11-data 2:1.6.9-2ubuntu1.2
ubuntu/libx11-dev 2:1.6.9-2ubuntu1.2
ubuntu/libx11-xcb1 2:1.6.9-2ubuntu1.2
ubuntu/libxau-dev 1:1.0.9-0ubuntu1
ubuntu/libxau6 1:1.0.9-0ubuntu1
ubuntu/libxaw7 2:1.0.13-1
ubuntu/libxcb-dri2-0 1.14-2
ubuntu/libxcb-dri3-0 1.14-2
ubuntu/libxcb-glx0 1.14-2
ubuntu/libxcb-present0 1.14-2
ubuntu/libxcb-render0-dev 1.14-2
ubuntu/libxcb-render0 1.14-2
ubuntu/libxcb-shm0-dev 1.14-2
ubuntu/libxcb-shm0 1.14-2
ubuntu/libxcb-sync1 1.14-2
ubuntu/libxcb-xfixes0 1.14-2
ubuntu/libxcb1-dev 1.14-2
ubuntu/libxcb1 1.14-2
ubuntu/libxdmcp-dev 1:1.1.3-0ubuntu1
ubuntu/libxdmcp6 1:1.1.3-0ubuntu1
ubuntu/libxext-dev 2:1.3.4-0ubuntu1
ubuntu/libxext6 2:1.3.4-0ubuntu1
ubuntu/libxfixes3 1:5.0.3-2
ubuntu/libxi6 2:1.7.10-0ubuntu1
ubuntu/libxml2-dev 2.9.10 dfsg-5ubuntu0.20.04.6
ubuntu/libxml2 2.9.10 dfsg-5ubuntu0.20.04.6
ubuntu/libxmuu1 2:1.1.3-0ubuntu1
ubuntu/libxrender-dev 1:0.9.10-1
ubuntu/libxrender1 1:0.9.10-1
ubuntu/libxshmfence1 1.3-1
ubuntu/libxxf86vm1 1:1.1.4-1build1
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/linux-libc-dev 5.4.0-148.165
ubuntu/locales 2.31-0ubuntu9.9
ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/make 4.2.1-1.2
ubuntu/mariadb-common 1:10.3.38-0ubuntu0.20.04.1
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mime-support 3.64ubuntu1
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/mysql-common 5.8 1.0.5ubuntu2
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/netbase 6.1
ubuntu/nettle-dev 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/ocaml-base-nox 4.08.1-8
ubuntu/ocaml-nox 4.08.1-8
ubuntu/openjdk-11-jre-headless 11.0.18 10-0ubuntu1~20.04.1
ubuntu/openssh-client 1:8.2p1-4ubuntu0.11
ubuntu/openssl 1.1.1f-1ubuntu2.18
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
ubuntu/patch 2.7.6-6
ubuntu/perl-base 5.30.0-9ubuntu0.3
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
ubuntu/perl 5.30.0-9ubuntu0.3
ubuntu/pkg-config 0.29.1-0ubuntu4
ubuntu/preview-latex-style 11.91-2ubuntu2
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/python3-distutils 3.8.10-0ubuntu1~20.04
ubuntu/python3-lib2to3 3.8.10-0ubuntu1~20.04
ubuntu/python3-minimal 3.8.2-0ubuntu2
ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04.7
ubuntu/python3.8 3.8.10-0ubuntu1~20.04.7
ubuntu/python3 3.8.2-0ubuntu2
ubuntu/readline-common 8.0-4
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
ubuntu/tcl8.6 8.6.10 dfsg-1
ubuntu/tex-common 6.13
ubuntu/tk8.6 8.6.10-1
ubuntu/tzdata 2023c-0ubuntu0.20.04.1
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/ucf 3.0038 nmu1
ubuntu/unzip 6.0-25ubuntu1.1
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/uuid-dev 2.34-0.1ubuntu9.3
ubuntu/x11-common 1:7.7 19ubuntu14
ubuntu/x11proto-core-dev 2019.2-1ubuntu1
ubuntu/x11proto-dev 2019.2-1ubuntu1
ubuntu/x11proto-xext-dev 2019.2-1ubuntu1
ubuntu/xauth 1:1.1-0ubuntu1
ubuntu/xfonts-utils 1:7.7 6
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.4.0-1
ubuntu/zip 3.0-11build1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5

bash 5.0.17
openssl 3.0.12
python 3.11.5
python 3.6.13

actions/checkout v2
actions/setup-python v1

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
casperjs 1.1.0-beta5
leaflet-omnivore 0.3.4
leaflet.markercluster 1.1.0

conda-package-handling 2.2.0

ecosyste.ms

Data

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Docker

prismcmap/sushi : develop

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