Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

yinxiu/variantalker : v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

Debian GNU/Linux 12 (bookworm)

Latest release: over 1 year ago - 119 downloads - 1,068 dependencies

Dependencies

cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
compiler 4.3.0
conflicted 1.2.0
cpp11 0.4.3
crayon 1.5.2
curl 5.0.0
data.table 1.14.8
datasets 4.3.0
dbplyr 2.3.2
splines 4.3.0
stats4 4.3.0
stats 4.3.0
stringi 1.7.12
stringr 1.5.0
survival 3.5-3
sys 3.4.2
systemfonts 1.0.4
tcltk 4.3.0
@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
BH 1.81.0-1
BSgenome.Hsapiens.UCSC.hg19 1.4.3
BSgenome.Hsapiens.UCSC.hg38 1.4.5
BSgenome 1.68.0
Biobase 2.60.0
BiocGenerics 0.46.0
BiocIO 1.10.0
BiocManager 1.30.20
BiocParallel 1.34.2
BiocVersion 3.17.1
Biostrings 2.68.1
DBI 1.1.3
DelayedArray 0.26.3
GenomeInfoDb 1.36.0
GenomeInfoDbData 1.2.10
GenomicAlignments 1.36.0
GenomicRanges 1.52.0
IRanges 2.34.0
KernSmooth 2.23-20
MASS 7.3-58.2
Matrix 1.5-3
MatrixGenerics 1.12.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
Rcpp 1.0.10
Rhtslib 2.2.0
Rsamtools 2.16.0
S4Arrays 1.0.4
S4Vectors 0.38.1
SummarizedExperiment 1.30.1
XML 3.99-0.14
XVector 0.40.0
askpass 1.1
backports 1.4.1
base64enc 0.1-3
base 4.3.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
broom 1.0.4
bslib 0.4.2
cachem 1.0.8
callr 3.7.3
cellranger 1.1.0
class 7.3-21
cli 3.6.1
clipr 0.8.0
deconstructSigs 1.8.0
digest 0.6.31
doParallel 1.0.17
docopt 0.7.1
dplyr 1.1.2
dtplyr 1.3.1
ellipsis 0.3.2
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fontawesome 0.5.1
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
generics 0.1.3
getopt 1.20.3
ggplot2 3.4.2
glue 1.6.2
googledrive 2.1.0
googlesheets4 1.1.0
grDevices 4.3.0
graphics 4.3.0
grid 4.3.0
gtable 0.3.3
haven 2.5.2
highr 0.10
hms 1.1.3
htmltools 0.5.5
httr 1.4.6
ids 1.0.1
isoband 0.2.7
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.3
littler 0.3.17
lubridate 1.9.2
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.3.0
mgcv 1.8-41
mime 0.12
modelr 0.1.11
munsell 0.5.0
mutSignatures 2.1.1
nlme 3.1-162
nnet 7.3-18
openssl 2.0.6
parallel 4.3.0
pillar 1.9.0
pkgconfig 2.0.3
plyr 1.8.8
pracma 2.4.2
prettyunits 1.1.1
processx 3.8.1
progress 1.2.2
proxy 0.4-27
ps 1.7.5
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
readr 2.1.4
readxl 1.4.2
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.15
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.21
rpart 4.1.19
rstudioapi 0.14
rtracklayer 1.60.0
rvest 1.0.3
sass 0.4.6
scales 1.2.1
selectr 0.4-2
snow 0.4-4
spatial 7.3-16
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 2.0.0
timechange 0.2.0
tinytex 0.45
tools 4.3.0
translations 4.3.0
tzdb 0.4.0
utf8 1.2.3
utils 4.3.0
uuid 1.1-0
vctrs 0.6.2
viridisLite 0.4.2
vroom 1.6.3
withr 2.5.0
xfun 0.39
xml2 1.3.4
yaml 2.3.7
zlibbioc 1.46.0

pyasn1 0.5.0
pycairo 1.23.0
pyasn1-modules 0.3.0
attrs 23.1.0
protobuf 4.23.1
pyOpenSSL 22.0.0
;platform_system Linux
;platform_system Windows
CNVkit 0.9.10
Cython 0.29.34
Jinja2 3.1.2
Markdown 3.4.3
MarkupSafe 2.1.2
Pillow 9.5.0
PySocks 1.7.1
PyVCF 0.6.8
Werkzeug 2.3.4
absl-py 1.4.0
aiohttp 3.8.4
aiosignal 1.3.1
apricot-select 0.6.1
argcomplete 3.0.8
argparse 1.2.1
astunparse 1.6.3
async-timeout 4.0.2
beautifulsoup4 4.12.2
biopython 1.81
boltons 23.0.0
boto 2.49.0
brotlipy 0.7.0
bs4 0.0.1
cachetools 5.3.0
certifi 2023.5.7
cffi 1.15.1
chardet 5.1.0
charset-normalizer 2.0.4
click 8.1.3
cmake 3.26.3
conda-content-trust 0.1.3
conda-package-handling 1.9.0
conda 23.3.1
contourpy 1.0.7
crcmod 1.7
cryptography 38.0.1
cycler 0.11.0
fasteners 0.18
filelock 3.12.0
flatbuffers 23.5.9
fonttools 4.39.4
freetype-py 2.3.0
frozenlist 1.3.3
gast 0.4.0
gcs-oauth2-boto-plugin 3.0
google-apitools 0.5.32
google-auth-oauthlib 1.0.0
google-auth 2.18.1
google-pasta 0.2.0
google-reauth 0.1.1
grpcio 1.54.2
gsutil 5.24
h5py 3.8.0
httplib2 0.20.4
idna 3.4
importlib-metadata 6.6.0
importlib-resources 5.12.0
jax 0.4.10
joblib 1.2.0
jsonpatch 1.32
jsonpointer 2.1
keras 2.12.0
kiwisolver 1.4.4
libclang 16.0.0
lit 16.0.5
llvmlite 0.40.0
lxml 4.9.2
matplotlib 3.7.1
mkl-fft 1.3.6
mkl-random 1.2.2
mkl-service 2.4.0
ml-dtypes 0.1.0
monotonic 1.6
mpmath 1.3.0
multidict 6.0.4
natsort 8.3.1
ncls 0.0.68
networkx 3.1
nose 1.3.7
numba 0.57.0
numpy 1.23.5
nvidia-cublas-cu11 11.10.3.66
nvidia-cuda-cupti-cu11 11.7.101
nvidia-cuda-nvrtc-cu11 11.7.99
nvidia-cuda-runtime-cu11 11.7.99
nvidia-cudnn-cu11 8.5.0.96
nvidia-cufft-cu11 10.9.0.58
nvidia-curand-cu11 10.2.10.91
nvidia-cusolver-cu11 11.4.0.1
nvidia-cusparse-cu11 11.7.4.91
nvidia-nccl-cu11 2.14.3
nvidia-nvtx-cu11 11.7.91
oauth2client 4.1.3
oauthlib 3.2.2
opt-einsum 3.3.0
packaging 23.0
pandas 2.0.1
pip 22.3.1
platform_machine aarch64
pluggy 1.0.0
pomegranate 1.0.0
pyclone-vi 0.1.1
pycosat 0.6.4
pycparser 2.21
pyfaidx 0.7.2.1
pyparsing 3.0.9
pyranges 0.0.127
pysam 0.21.0
python-apt 2.5.3
python-dateutil 2.8.2
python-debian 0.1.49
pytz 2023.3
pyu2f 0.1.5
reportlab 4.0.0
requests-oauthlib 1.3.1
requests 2.28.1
retry-decorator 1.1.1
rlPyCairo 0.2.0
rsa 3.1.4
rsa 4.7.2
ruamel.yaml.clib 0.2.6
ruamel.yaml 0.17.21
scikit-learn 1.2.2
scipy 1.10.1
setuptools 65.5.0
simplejson 3.5.2
simplejson 3.6.5
six 1.16.0
sorted-nearest 0.0.39
soupsieve 2.4.1
spliceai 1.3.1
sympy 1.12
tabulate 0.9.0
tensorboard-data-server 0.7.0
tensorboard 2.12.3
tensorflow-estimator 2.12.0
tensorflow-io-gcs-filesystem 0.32.0
tensorflow 2.12.0
termcolor 2.3.0
threadpoolctl 3.1.0
toolz 0.12.0
torch 2.0.1
tqdm 4.64.1
triton 2.0.0
typing_extensions 4.6.1
tzdata 2023.3
urllib3 1.26.13
wheel 0.37.1
wrapt 1.14.1
yarl 1.9.2
zipp 3.15.0

bash 5.2.15
java 11.0.13 7-b1751.21
python 3.9.15