broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

princessmaximacenter/cnv-tools 3.2.0

t9kpublic/component-tensorflow-predict latest

intelliseqngs/task_resources-panels 0.1.3

t9kpublic/component-tensorflow-tfdv latest

intelliseqngs/task_rna-seq-qc-stats-se 1.1.0

intelliseqngs/task_rna-seq-count-concat 1.0.0

intelliseqngs/task_bam-metrics-hg38 1.0.2

intelliseqngs/task_rna-seq-align-stats-bwa 1.0.0

genomicmedicinesweden/gms-artic-nanopore 0c599b9

gcriomlpipeline/ml-pipeline-dataflow-tf-predict 0.1.5

hoonbiolab/ccle-cga v0.2

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

intelliseqngs/task_vcf-anno-dbnsfp 1.3.0-chrY-and-the-rest

intelliseqngs/task_nipt-anno 1.2.0

intelliseqngs/multiqc 2.0.2

intelliseqngs/task_vcf-anno-func-gene 1.3.5

intelliseqngs/task_panel-generate 2.0.1

intelliseqngs/gatk-4.1.9.0 1.0.0

anderspitman/iobio-gru-backend v1.13.0

ztang301/exph vHipSTR

intelliseqngs/task_bed-to-interval-list 1.1.5

qdidiscoveryservices/gatk-v2461_bwa_aws latest

t9kpublic/component-tensorflow-confusion_matrix latest

intelliseqngs/task_phasing-eagle-without-ref-data 3.0.1

intelliseqngs/gsort 1.0.1

intelliseqngs/task_imputing-quality 0.0.2

dhspence/gtc2vcf latest

intelliseqngs/task_simulate-neat-hg38 1.0.0

ctomlins/bcl2fastq latest

qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

intelliseqngs/task_sv-breaks-pos 1.0.2

intelliseqngs/smoove-grch38-no-alt 1.1.0

intelliseqngs/gatk-4.2.4.1 1.0.1

intelliseqngs/resources-pgx-polygenic 1.2.4

intelliseqngs/species-name-taxonomy 1.0.0

intelliseqngs/lumpy 1.0.0

intelliseqngs/task_sv-anno-panel 1.1.0

intelliseqngs/task_rna-seq-concat-summary-se 1.1.0

broadinstitute/pcawg_full 7

intelliseqngs/snpsift 1.2.0

intelliseqngs/task_sv-report 1.0.0

intelliseqngs/task_ibd-report 1.0.0

intelliseqngs/task_vcf-anno-custom 1.0.1

intelliseqngs/task_fq-bowtie 1.1.0

genieusgenomics/pbsv 2.8.0

PacBio structural variant (SV) calling and analysis tools

intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

intelliseqngs/collect-hs-metrics 1.0.0

seglh/vcfserver v1.0.1-rc2

https://github.com/moka-guys/vcfserver

ctomlins/supernova v2.1.1

dmiller15/cutesv 1.0.13

intelliseqngs/task_graph-generator 1.0.0

harshaldeokar/us_medgenome_v12 latest

mohankrishna225/jupyterbook 145

hoonbiolab/aa_tools v2.3.1.1

intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

sagnikbanerjee15/smrtlink 10.1.0.119588

intelliseqngs/report-acmg 1.0.1

bokebiotech/qcpipe v6

intelliseqngs/task_pgx-get-rs-genotype 1.0.2

prosyslab/bug-bench-cnvkit 20210806

qdidiscoveryservices/gatk-v2461_bwa_vardict latest

yiluxiangbei/pumpkin-gatk-notebook 1.0

intelliseqngs/pypgx 1.0.0

msantoso98/cnv-tools 3.0.1

johnyaku/souporcell test

Extension to the original souporcell pipeline:

intelliseqngs/openjdk11 1.0.0

intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

dabbleofdevops/nextneopi 20230817

intelliseqngs/repots 1.2.8

hremon331046/neoantigen-vaccine-pipeline nf-pipeline

aminhaghparast/genomics21 2.12

intelliseqngs/task_simulate-neat-grch38 1.0.0

khalidtab/vlq latest

Tracking SARS-CoV-2 variants of concern in wastewater

intelliseqngs/mobigen-models-mock 0.0.0

intelliseqngs/broad-institute-hg38 1.0.0

yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

bokebiotech/report v2

philiplin1212/gatk latest

intelliseqngs/bwa-mem-hg38 3.1.0

intelliseqngs/bwa-mem-grch38-no-alt 3.1.0

intelliseqngs/task_phasing-eagle 3.0.1-chrY-and-the-rest

intelliseqngs/snpeff-grch38.100 1.0.0

intelliseqngs/ubuntu-toolbox 18.04_v0.12

intelliseqngs/snpeff-grch38.102 1.0.2

intelliseqngs/task_vcf-anno-repeat 1.0.1

intelliseqngs/task_interval-group 1.0.2

intelliseqngs/task_bco-json-to-csv 0.0.4

intelliseqngs/task_simulate-neat-hg38-chr-wise 1.0.0-chrY-and-the-rest

intelliseqngs/task_vcf-uniq 1.0.0