nfcore/atacseq : latest
A Docker container for the nf-core/atacseq pipeline.
Latest release: over 3 years ago - 55,607 downloads - 352 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.48.0
- BH 1.75.0-0
- Biobase 2.46.0
- BiocGenerics 0.32.0
- BiocManager 1.30.15
- BiocParallel 1.20.0
- DBI 1.1.1
- DESeq2 1.26.0
- DelayedArray 0.12.0
- Formula 1.2-4
- GenomeInfoDb 1.22.0
- GenomeInfoDbData 1.2.2
- GenomicRanges 1.38.0
- Hmisc 4.4-1
- IRanges 2.20.0
- MASS 7.3-54
- Matrix 1.3-3
- R6 2.5.0
- RColorBrewer 1.1-2
- RCurl 1.98-1.3
- RSQLite 2.2.5
- Rcpp 1.0.6
- RcppArmadillo 0.10.4.0.0
- S4Vectors 0.24.0
- SummarizedExperiment 1.16.0
- UpSetR 1.4.0
- XML 3.99-0.3
- XVector 0.26.0
- acepack 1.4.1
- affy 1.64.0
- affyio 1.56.0
- annotate 1.64.0
- assertthat 0.2.1
- backports 1.2.1
- base64enc 0.1-3
- base 3.6.3
- bit64 4.0.5
- bit 4.0.4
- bitops 1.0-7
- blob 1.2.1
- brio 1.1.2
- cachem 1.0.5
- callr 3.7.0
- checkmate 2.0.0
- cli 2.5.0
- cluster 2.1.0
- colorspace 2.0-1
- compiler 3.6.3
- crayon 1.4.1
- data.table 1.14.0
- datasets 3.6.3
- desc 1.3.0
- diffobj 0.3.4
- digest 0.6.27
- dplyr 1.0.6
- ellipsis 0.3.2
- evaluate 0.14
- fansi 0.4.2
- farver 2.1.0
- fastmap 1.1.0
- foreign 0.8-76
- formatR 1.9
- futile.logger 1.4.3
- futile.options 1.0.1
- genefilter 1.68.0
- geneplotter 1.64.0
- generics 0.1.0
- getopt 1.20.3
- ggplot2 3.3.2
- glue 1.4.2
- grDevices 3.6.3
- graphics 3.6.3
- grid 3.6.3
- gridExtra 2.3
- gtable 0.3.0
- highr 0.9
- htmlTable 2.2.1
- htmltools 0.5.1.1
- htmlwidgets 1.5.3
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- jsonlite 1.7.2
- knitr 1.33
- labeling 0.4.2
- lambda.r 1.2.4
- lattice 0.20-41
- latticeExtra 0.6-29
- lifecycle 1.0.0
- limma 3.42.0
- locfit 1.5-9.4
- magrittr 2.0.1
- markdown 1.1
- matrixStats 0.58.0
- memoise 2.0.0
- methods 3.6.3
- mgcv 1.8-35
- mime 0.10
- munsell 0.5.0
- nlme 3.1-150
- nnet 7.3-16
- optparse 1.6.6
- org.testing.db 0.1
- parallel 3.6.3
- pheatmap 1.0.12
- pillar 1.6.1
- pkgconfig 2.0.3
- pkgload 1.2.1
- plogr 0.2.0
- plyr 1.8.6
- png 0.1-7
- praise 1.0.0
- preprocessCore 1.48.0
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- rematch2 2.1.2
- reshape2 1.4.4
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- rpart 4.1-15
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- scales 1.1.1
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- splines 3.6.3
- stats4 3.6.3
- stats 3.6.3
- stringi 1.5.3
- stringr 1.4.0
- survival 3.2-11
- tcltk 3.6.3
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.0.2
- tibble 3.1.2
- tidyr 1.1.0
- tidyselect 1.1.1
- tools 3.6.3
- translations 3.6.3
- utf8 1.2.1
- utils 3.6.3
- vctrs 0.3.8
- viridis 0.6.1
- viridisLite 0.4.0
- vsn 3.54.0
- waldo 0.2.5
- withr 2.4.2
- xfun 0.22
- xtable 1.8-4
- yaml 2.2.1
- zlibbioc 1.32.0
- debian/adduser 3.118
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- debian/debian-archive-keyring 2019.1
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