Ecosyste.ms: Docker
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maxfieldkelsey/snakesenescence : latest
image for use in snakemake
Ubuntu 20.04.5 LTS
Latest release: almost 2 years ago - 13 downloads - 494 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.56.2
- BH 1.81.0-1
- Biobase 2.54.0
- BiocFileCache 2.2.0
- BiocGenerics 0.40.0
- BiocIO 1.4.0
- BiocParallel 1.28.3
- BiocSingular 1.10.0
- Biostrings 2.62.0
- DBI 1.1.3
- DESeq2 1.34.0
- DelayedArray 0.20.0
- DelayedMatrixStats 1.16.0
- GenomeInfoDb 1.30.1
- GenomeInfoDbData 1.2.7
- GenomicAlignments 1.30.0
- GenomicFeatures 1.46.1
- GenomicRanges 1.46.1
- IRanges 2.28.0
- KEGGREST 1.34.0
- MASS 7.3-58.2
- Matrix 1.5-3
- MatrixGenerics 1.6.0
- PCAtools 2.6.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RSQLite 2.2.20
- Rcpp 1.0.10
- RcppArmadillo 0.11.4.3.1
- RcppEigen 0.3.3.9.3
- RcppNumerical 0.4-0
- Rhtslib 1.26.0
- Rsamtools 2.10.0
- S4Vectors 0.32.4
- SQUAREM 2021.1
- ScaledMatrix 1.2.0
- SummarizedExperiment 1.24.0
- XML 3.99-0.11
- XVector 0.34.0
- annotate 1.72.0
- apeglm 1.16.0
- ashr 2.2-54
- askpass 1.1
- assertthat 0.2.1
- base 4.1.1
- bbmle 1.0.25
- bdsmatrix 1.3-6
- beachmat 2.10.0
- beachtest 1.0.0
- biomaRt 2.50.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- cachem 1.0.6
- cli 3.6.0
- clipr 0.8.0
- coda 0.19-4
- colorspace 2.1-0
- compiler 4.1.1
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- curl 4.3.3
- datasets 4.1.1
- dbplyr 2.3.0
- digest 0.6.31
- dplyr 1.1.0
- dqrng 0.3.0
- ellipsis 0.3.2
- emdbook 1.3.12
- etrunct 0.1
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.0
- filelock 1.0.2
- formatR 1.14
- futile.logger 1.4.3
- futile.options 1.0.1
- genefilter 1.76.0
- geneplotter 1.72.0
- generics 0.1.3
- ggplot2 3.4.0
- ggrepel 0.9.2
- glue 1.6.2
- grDevices 4.1.1
- graphics 4.1.1
- grid 4.1.1
- gtable 0.3.1
- hms 1.1.2
- httr 1.4.4
- invgamma 1.1
- irlba 2.3.5.1
- isoband 0.2.7
- jsonlite 1.8.4
- labeling 0.4.2
- lambda.r 1.2.4
- lattice 0.20-45
- lifecycle 1.0.3
- locfit 1.5-9.7
- magrittr 2.0.3
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.1.1
- mgcv 1.8-41
- mime 0.12
- mixsqp 0.3-48
- morebeach 1.0.0
- morebeachtests 1.0.0
- munsell 0.5.0
- mvtnorm 1.1-3
- mvtnormAPI 1.0-0
- nlme 3.1-161
- numDeriv 2016.8-1.1
- openssl 2.0.5
- org.testing.db 0.1
- parallel 4.1.1
- pheatmap 1.0.12
- pillar 1.8.1
- pkgconfig 2.0.3
- plogr 0.2.0
- plyr 1.8.8
- png 0.1-8
- prettyunits 1.1.1
- progress 1.2.2
- purrr 1.0.1
- rappdirs 0.3.3
- readr 2.1.3
- reshape2 1.4.4
- restfulr 0.0.15
- rjson 0.2.21
- rlang 1.0.6
- rsvd 1.0.5
- rtracklayer 1.54.0
- scales 1.2.1
- sitmo 2.0.2
- snow 0.4-4
- sparseMatrixStats 1.6.0
- splines 4.1.1
- stats4 4.1.1
- stats 4.1.1
- stringi 1.7.6
- stringr 1.5.0
- survival 3.5-0
- sys 3.4.1
- tcltk 4.1.1
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 3.1.8
- tidyselect 1.2.0
- tools 4.1.1
- translations 4.1.1
- truncnorm 1.0-8
- tzdb 0.3.0
- utf8 1.2.2
- utils 4.1.1
- vctrs 0.5.2
- viridisLite 0.4.1
- vroom 1.6.1
- withr 2.5.0
- xml2 1.3.3
- xtable 1.8-4
- yaml 2.3.7
- zlibbioc 1.40.0
- ubuntu/adduser 3.118ubuntu2
- ubuntu/alsa-topology-conf 1.2.2-1
- ubuntu/alsa-ucm-conf 1.2.2-1ubuntu0.13
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.6
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/bedtools 2.27.1 dfsg-4ubuntu1
- ubuntu/binutils-common 2.34-6ubuntu1.4
- ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.4
- ubuntu/binutils 2.34-6ubuntu1.4
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
- ubuntu/build-essential 12.8ubuntu1.1
- ubuntu/bzip2-doc 1.0.8-2
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates-java 20190405ubuntu1
- ubuntu/ca-certificates 20211016ubuntu0.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/cpp 4:9.3.0-1ubuntu2
- ubuntu/cwltool 2.0.20200224214940 dfsg-1
- ubuntu/dash 0.5.10.2-6
- ubuntu/dbus 1.12.16-2ubuntu2.3
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dirmngr 2.2.19-3ubuntu2.2
- ubuntu/dpkg-dev 1.19.7ubuntu3.2
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fakeroot 1.24-1
- ubuntu/fdisk 2.34-0.1ubuntu9.3
- ubuntu/file 1:5.38-4
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/fontconfig-config 2.13.1-2ubuntu3
- ubuntu/fonts-dejavu-core 2.37-1
- ubuntu/fonts-glyphicons-halflings 1.009~3.4.1 dfsg-1
- ubuntu/g -9 9.4.0-1ubuntu1~20.04.1
- ubuntu/g 4:9.3.0-1ubuntu2
- ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
- ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc 4:9.3.0-1ubuntu2
- ubuntu/git-man 1:2.25.1-1ubuntu3.6
- ubuntu/git 1:2.25.1-1ubuntu3.8
- ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
- ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
- ubuntu/gnupg 2.2.19-3ubuntu2.2
- ubuntu/gpg-agent 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
- ubuntu/gpg 2.2.19-3ubuntu2.2
- ubuntu/gpgconf 2.2.19-3ubuntu2.2
- ubuntu/gpgsm 2.2.19-3ubuntu2.2
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/java-common 0.72
- ubuntu/libacl1 2.2.53-6
- ubuntu/libalgorithm-diff-perl 1.19.03-2
- ubuntu/libalgorithm-diff-xs-perl 0.04-6
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 2.13.3-7ubuntu5.1
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libasound2-data 1.2.2-2.1ubuntu2.5
- ubuntu/libasound2 1.2.2-2.1ubuntu2.5
- ubuntu/libassuan0 2.5.3-7ubuntu2
- ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libavahi-client3 0.7-4ubuntu7.1
- ubuntu/libavahi-common-data 0.7-4ubuntu7.1
- ubuntu/libavahi-common3 0.7-4ubuntu7.1
- ubuntu/libbinutils 2.34-6ubuntu1.4
- ubuntu/libblas3 3.9.0-1build1
- ubuntu/libblkid1 2.34-0.1ubuntu9.3
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libbz2-dev 1.0.8-2
- ubuntu/libc-ares2 1.15.0-1ubuntu0.1
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc-dev-bin 2.31-0ubuntu9.9
- ubuntu/libc6-dev 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
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- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libctf-nobfd0 2.34-6ubuntu1.4
- ubuntu/libctf0 2.34-6ubuntu1.4
- ubuntu/libcups2 2.3.1-9ubuntu1.2
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.15
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdbus-1-3 1.12.16-2ubuntu2.3
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/libdeflate0 1.5-3
- ubuntu/libdpkg-perl 1.19.7ubuntu3.2
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1-dev 2.2.9-1ubuntu0.6
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- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfakeroot 1.24-1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.3
- ubuntu/libffi7 3.3-4
- ubuntu/libfile-fcntllock-perl 0.22-3build4
- ubuntu/libfontconfig1 2.13.1-2ubuntu3
- ubuntu/libfreetype6 2.10.1-2ubuntu0.2
- ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
- ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
- ubuntu/libgdbm6 1.18.1-5
- ubuntu/libgfortran5 10.3.0-1ubuntu1~20.04
- ubuntu/libglib2.0-0 2.64.6-1~ubuntu20.04.4
- ubuntu/libglib2.0-data 2.64.6-1~ubuntu20.04.4
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.7
- ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgraphite2-3 1.3.13-11build1
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libharfbuzz0b 2.6.4-1ubuntu4.2
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libhts3 1.10.2-3ubuntu0.1
- ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.2
- ubuntu/libicu66 66.1-2ubuntu2.1
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/libisl22 0.22.1-1
- ubuntu/libitm1 10.3.0-1ubuntu1~20.04
- ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.3
- ubuntu/libjpeg8 8c-2ubuntu8
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- ubuntu/libk5crypto3 1.17-6ubuntu4.1
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- ubuntu/libkrb5support0 1.17-6ubuntu4.1
- ubuntu/libksba8 1.3.5-2ubuntu0.20.04.2
- ubuntu/liblapack3 3.9.0-1build1
- ubuntu/liblcms2-2 2.9-4
- ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
- ubuntu/liblocale-gettext-perl 1.07-4
- ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
- ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
- ubuntu/liblzma-dev 5.2.4-1ubuntu1.1
- ubuntu/liblzma5 5.2.4-1ubuntu1.1
- ubuntu/libmagic-mgc 1:5.38-4
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- ubuntu/libmount1 2.34-0.1ubuntu9.3
- ubuntu/libmpc3 1.1.0-1
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- ubuntu/libmpfr6 4.0.2-1
- ubuntu/libncurses6 6.2-0ubuntu2
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- ubuntu/libnghttp2-14 1.40.0-1build1
- ubuntu/libnode64 10.19.0~dfsg-3ubuntu1
- ubuntu/libnpth0 1.6-1
- ubuntu/libnspr4 2:4.25-1
- ubuntu/libnss3 2:3.49.1-1ubuntu1.8
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.3
- ubuntu/libpam-modules 1.3.1-5ubuntu4.3
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.3
- ubuntu/libpam0g 1.3.1-5ubuntu4.3
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
- ubuntu/libpcre3 2:8.39-12ubuntu0.1
- ubuntu/libpcsclite1 1.8.26-3
- ubuntu/libperl5.30 5.30.0-9ubuntu0.3
- ubuntu/libpng16-16 1.6.37-2
- ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
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- ubuntu/libquadmath0 10.3.0-1ubuntu1~20.04
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- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
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- ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
- ubuntu/libsystemd0 245.4-4ubuntu3.19
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- ubuntu/logsave 1.45.5-2ubuntu1.1
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- ubuntu/make 4.2.1-1.2
- ubuntu/manpages-dev 5.05-1
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- ubuntu/ncurses-base 6.2-0ubuntu2
- ubuntu/ncurses-bin 6.2-0ubuntu2
- ubuntu/nodejs-doc 10.19.0~dfsg-3ubuntu1
- ubuntu/nodejs 10.19.0~dfsg-3ubuntu1
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- ubuntu/python3-certifi 2019.11.28-1
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- ubuntu/python3 3.8.2-0ubuntu2
- ubuntu/readline-common 8.0-4
- ubuntu/samtools 1.10-3
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/shared-mime-info 1.15-1
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- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
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- ubuntu/tzdata 2022g-0ubuntu0.20.04.1
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/ucf 3.0038 nmu1
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- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
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- js 1.0.0
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- mypy 0.931
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