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Package Usage : deb : ubuntu/samtools

Explore the latest package usage data for ubuntu/samtools in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 135
Total downloads: 32,474,556
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.7-1, 1.13-4
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: 9 months ago - 40,521,415 downloads - 513 dependencies
wilfriedguiblet/isomir v0.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 285 downloads - 1,657 dependencies
lukewojenski/samtools 1.13

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 23 downloads - 120 dependencies
luisas/feelnc 0.1.1

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 6 years ago - 49 downloads - 662 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 5 years ago - 95 downloads - 866 dependencies
mqmnd/samtools arm-1.13

  • version: 1.13-4
  • arch: arm64
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 154 downloads - 120 dependencies
elle72/basic pygenometrack

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: 6 months ago - 55,692 downloads - 397 dependencies
sridnona/igv_reports v1.7.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 193 downloads - 371 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 47 downloads - 635 dependencies
tercen/tracer_docker_operator 0.1.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 119 downloads - 826 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: 3 months ago - 821 downloads - 739 dependencies
nciccbr/charlie_index latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 34 downloads - 709 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.7-1, 1.13-4
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
intelliseqngs/igv 3.0.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 3,196 downloads - 509 dependencies
biocontainers/mitohifi 3.0.0_cv1

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 3,691 downloads - 559 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 403 downloads - 849 dependencies
wao2/kraken2_container latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 31 downloads - 191 dependencies
sheffieldbioinformatics/unix-training latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 3 years ago - 534 downloads - 1,221 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 1,072 downloads - 681 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 131 downloads - 1,081 dependencies
chgyi/bio 3.5.1

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 7 years ago - 795 downloads - 1,077 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 15,899 downloads - 839 dependencies
broadinstitute/pcawg_full 7

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 8 years ago - 420 downloads - 889 dependencies
evolbioinfo/covid-align latest

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 5 years ago - 236 downloads - 2,762 dependencies
intelliseqngs/prodia_task_gtc-to-vcf-grch38-no-alt 1.0.4

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 228 downloads - 635 dependencies
mfsentma/atacseq latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 34 downloads - 852 dependencies
nciccbr/ccrgb_annovar v1.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 147 downloads - 854 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 5 years ago - 221 downloads - 928 dependencies
nciccbr/ccrgb_hlaminer v2

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 279 downloads - 713 dependencies
salvacasani/bwa latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 193 downloads - 235 dependencies
man4ish/demuxlet_v3 latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 80 downloads - 618 dependencies
harrisonjg/freyja v1.3.11

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.10
Latest release: almost 3 years ago - 195 downloads - 501 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 8 years ago - 105 downloads - 1,213 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 15 downloads - 1,069 dependencies
nahyunkong/mito v6

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 16,238 downloads - 2,488 dependencies
souckmi/arriba 1.7

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 185 downloads - 310 dependencies
biodufpa/pp2oa advanced

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.10
Latest release: over 2 years ago - 99 downloads - 1,124 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 6 downloads - 628 dependencies
vanallenlab/g2c-vep bigWigFileOpen

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 months ago - 11,589 downloads - 760 dependencies
hailgenetics/vep-grch37-85 0.2.135

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: 6 months ago - 3,675 downloads - 367 dependencies
bsceapm/ahatool 2.2

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 245 downloads - 40 dependencies
jluebeck/ampliconsuite-pipeline v1.3.9

Docker image for AmpliconSuite-pipeline. Runscripts available at https://github.com/AmpliconSuite

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: 7 months ago - 4,799 downloads - 320 dependencies
bioinforpi/nxf-bsbolt v0.0.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 16 downloads - 338 dependencies
cloxd/decontaminer 1.4

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 33 downloads - 199 dependencies
gene110/vep_filter v07

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 10 downloads - 1,164 dependencies
dhspence/docker-mocha latest

  • version: 1.10-4
  • arch: amd64
  • distro: ubuntu-20.10
Latest release: over 4 years ago - 76 downloads - 433 dependencies
ctomlins/bash latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 20 downloads - 400 dependencies
chloetu/ig_aligners latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 39 downloads - 616 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 115 downloads - 1,382 dependencies
rosadesa/freec 0.5

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 60 downloads - 662 dependencies
zingoo/rna_bench baruzzo-docker-v0.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 37 downloads - 272 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 5 years ago - 17 downloads - 930 dependencies
nfcore/cellranger_clean 3.0.2.9002

Mirror of universc Single cell tooling - cellranger_clean

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 22 downloads - 1,995 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 42 downloads - 1,720 dependencies
luisas/rseqc latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 6 years ago - 31 downloads - 449 dependencies
sgiorgetti/api-build release-109-56

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 33 downloads - 399 dependencies
jieliu4wustl/vg liu.jie

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 51 downloads - 356 dependencies
medicinalgenomics/star latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 30 downloads - 168 dependencies
yunagaoka/ubuntu22.04 0.1.2

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 26 downloads - 1,139 dependencies
mfsentma/rna latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 12 downloads - 807 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 185 downloads - 4,337 dependencies
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 5 years ago - 48 downloads - 844 dependencies
jieliu4wustl/wustl hisat3n

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 5,700 downloads - 1,124 dependencies
bioxfu/ddngs latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 44 downloads - 1,055 dependencies
gailr/bamsurgeon-42123 latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 44 downloads - 432 dependencies
alexdhill/complete-seq time

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 1,859 downloads - 584 dependencies
streptomyces/reciblast latest

Reciprocal blastp for Ainsley

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 104 downloads - 754 dependencies
tipsarin/star 2.7.3a

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 3 years ago - 68 downloads - 328 dependencies
alexwaldrop/freyja v1.3.11

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.10
Latest release: about 3 years ago - 40 downloads - 376 dependencies
arnstrm2/gatk 4.4.0

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 130 downloads - 1,044 dependencies
pderouault/bamkin 1.0.3

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 52 downloads - 1,225 dependencies
qtulab/miniencode latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 197 downloads - 4,269 dependencies
bsaintjo/dimelo cuda1200

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 79 downloads - 362 dependencies
meredith705/shasta latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 135 downloads - 268 dependencies
jdwiyanto/biobakery4 latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 29 downloads - 832 dependencies
elle72/testthis2 vs1

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 25 downloads - 838 dependencies
bigdatainbiomedicine/inspect-r latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 20 downloads - 643 dependencies
biocontainers/oncocnv v7.0_cv2

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 12,176 downloads - 307 dependencies
ndatth/pytorch v0.0.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 58 downloads - 232 dependencies
streptomyces/stage004 latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 17 downloads - 862 dependencies
broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 7,325 downloads - 752 dependencies
ctomlins/winnowmap latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 4 years ago - 6,287 downloads - 401 dependencies
maxfieldkelsey/snakesenescence latest

image for use in snakemake

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 33 downloads - 494 dependencies
kbase/kbase sdkbase.latest

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: almost 8 years ago - 4,331 downloads - 2,934 dependencies
luisas/samtools latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 8 years ago - 3,607 downloads - 342 dependencies
mjinkm/mtrfind latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 33 downloads - 255 dependencies
medicinalgenomics/bowtie2 latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 31 downloads - 221 dependencies
broadinstitute/terra-jupyter-gatk 0.0.13

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 6 years ago - 2,485 downloads - 3,913 dependencies