Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : deb : ubuntu/samtools

Explore the latest package usage data for ubuntu/samtools in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 135
Total downloads: 32,474,556

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 1.7-1, 1.13-4
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: 11 months ago - 31,988,536 downloads - 912 dependencies
broadinstitute/terra-jupyter-aou 8bf6b13

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 92,816 downloads - 4,112 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.7-1, 1.13-4
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: 11 months ago - 86,066 downloads - 912 dependencies
broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: about 2 years ago - 6,653 downloads - 752 dependencies
kbase/kbase sdkbase.latest

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 6 years ago - 4,258 downloads - 2,934 dependencies
luisas/samtools latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 6 years ago - 3,554 downloads - 342 dependencies
broadinstitute/terra-jupyter-gatk 8444561

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 2,239 downloads - 3,913 dependencies
ctomlins/winnowmap latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 6,203 downloads - 401 dependencies
biocontainers/oncocnv v7.0_cv2

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 12,111 downloads - 307 dependencies
intelliseqngs/igv 3.0.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 2,797 downloads - 509 dependencies
broadinstitute/pcawg_public latest

pcawg_public

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 7 years ago - 780 downloads - 1,368 dependencies
intelliseqngs/task_gtc-to-vcf-grch38-no-alt 1.1.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 1,238 downloads - 568 dependencies
kbase/kbase_base latest

KBase Base Image containing Core services and runtime

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 8 years ago - 510 downloads - 3,106 dependencies
kbase/sdkbase latest

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: almost 8 years ago - 476 downloads - 2,934 dependencies
biocontainers/mitohifi 3.0.0_cv1

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 3,520 downloads - 559 dependencies
qdidiscoveryservices/sentieon_omicsoft 202010.03

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 408 downloads - 283 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 403 downloads - 849 dependencies
nfcore/universc 1.2.5.1

Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline 

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 646 downloads - 2,033 dependencies
anand7899/alignment-tools latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 399 downloads - 218 dependencies
chrisamiller/nanopack-flair v1.5-7

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 328 downloads - 372 dependencies
evolbioinfo/ngphylogeny-galaxy latest

This repository contains tools and workflows used in NGPhylogeny.fr via galaxy.

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 3 years ago - 329 downloads - 2,651 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 4 years ago - 212 downloads - 965 dependencies
broadinstitute/pcawg_broad_wgs_variant_callers mutect_2percent_floor

pcawg_broad_wgs_variant_callers

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: almost 7 years ago - 246 downloads - 865 dependencies
gmacari/genomicutils latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 549 downloads - 520 dependencies
chgyi/bio 3.5.1

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 6 years ago - 158 downloads - 1,077 dependencies
broadinstitute/pcawg_full 7

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 7 years ago - 146 downloads - 889 dependencies
evolbioinfo/covid-align latest

COVID-Align: Accurate online alignment of hCoV-19 genomes using a profile HMM

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: over 4 years ago - 144 downloads - 2,762 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 146 downloads - 681 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 4 years ago - 131 downloads - 928 dependencies
broadinstitute/pcawg_tokens latest

  • version: 0.1.19-1
  • arch: amd64
  • distro: ubuntu-14.04
Latest release: about 8 years ago - 90 downloads - 1,472 dependencies
alexwaldrop/reads2variants v0.0

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.10
Latest release: almost 2 years ago - 90 downloads - 660 dependencies
genomehubs/mitohifi latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 108 downloads - 670 dependencies
tipsarin/rstudio 4.1.3viraltrack

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 54 downloads - 981 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 5 years ago - 44 downloads - 869 dependencies
ctomlins/hicpro latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: about 6 years ago - 43 downloads - 690 dependencies
luisas/feelnc 0.1.1

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 5 years ago - 38 downloads - 662 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 41 downloads - 866 dependencies
mqmnd/samtools arm-1.13

  • version: 1.13-4
  • arch: arm64
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 80 downloads - 120 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 35 downloads - 635 dependencies
tercen/tracer_docker_operator latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 37 downloads - 826 dependencies
dhspence/docker-crispresso latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 7 years ago - 34 downloads - 588 dependencies
tercen/tracer_docker_operator_base 1.0.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 36 downloads - 812 dependencies
dhspence/docker-cle-cwl latest

from mgibio with cwl in there too

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 7 years ago - 33 downloads - 1,402 dependencies
evolbioinfo/velvet v1.2.10

Short read de novo assembler using de Bruijn graphs http://www.ebi.ac.uk/~zerbino/velvet/

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: about 6 years ago - 33 downloads - 459 dependencies
sheffieldbioinformatics/unix-training latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 2 years ago - 126 downloads - 1,221 dependencies
dhspence/docker-mocha latest

  • version: 1.10-4
  • arch: amd64
  • distro: ubuntu-20.10
Latest release: over 3 years ago - 27 downloads - 433 dependencies
luisas/rseqc latest

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 5 years ago - 24 downloads - 449 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 7 years ago - 23 downloads - 1,213 dependencies
intelliseqngs/prodia_task_gtc-to-vcf-grch38-no-alt 1.0.4

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 41 downloads - 635 dependencies
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 4 years ago - 23 downloads - 844 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies
tipsarin/star 2.7.3a

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: almost 2 years ago - 26 downloads - 328 dependencies
nciccbr/ccrgb_hlaminer v2

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 96 downloads - 713 dependencies
dhspence/docker-annotsv latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 21 downloads - 563 dependencies
man4ish/demuxlet_v3 latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 33 downloads - 618 dependencies
avneeshbt/braker_sep062022 latest

Braker with Augustus

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 18 downloads - 719 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 15 downloads - 1,069 dependencies
alexwaldrop/freyja v1.3.11

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.10
Latest release: almost 2 years ago - 19 downloads - 376 dependencies
mrkevindc/varscan latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 66 downloads - 924 dependencies
mrkevindc/mutect2 latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 36 downloads - 912 dependencies
tercen/tracer_summarize_docker_operator latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 15 downloads - 760 dependencies
nahyunkong/mito v6

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 11,361 downloads - 2,488 dependencies
docker4sheng/workflow latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 15 downloads - 1,519 dependencies
souckmi/arriba 1.7

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 81 downloads - 310 dependencies
mrkevindc/sashimi latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 14 downloads - 360 dependencies
mqmnd/leafcutter amd

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 15 downloads - 624 dependencies
wilfriedguiblet/isomir v0.3

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 180 downloads - 1,657 dependencies
ctomlins/freebayes_polish latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 6 years ago - 172,757 downloads - 289 dependencies
nciccbr/ccrgb_annovar v1.0

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 127 downloads - 854 dependencies
bsceapm/ahatool 2.2

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 17 downloads - 40 dependencies
chloetu/ig_aligners latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 26 downloads - 616 dependencies
gene110/vep_filter v07

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 10 downloads - 1,164 dependencies
sagnikbanerjee15/nucleotide_selection_study 0.0.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 12 downloads - 784 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 0.1.19-1ubuntu1
  • arch: amd64
  • distro: ubuntu-16.04
Latest release: over 4 years ago - 10 downloads - 930 dependencies
mjinkm/mtrfind latest

  • version: 1.13-4
  • arch: amd64
  • distro: ubuntu-22.04
Latest release: almost 2 years ago - 13 downloads - 255 dependencies
jieliu4wustl/wustl v0.1_20230907

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 1 year ago - 4,483 downloads - 1,124 dependencies
vanessa/molecular-design-parsl latest

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 13 downloads - 1,385 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 6 downloads - 628 dependencies
bioinforpi/nxf-bsbolt v0.0.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 8 downloads - 338 dependencies
cloxd/decontaminer 1.4

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 9 downloads - 199 dependencies
ctomlins/bash latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 7 downloads - 400 dependencies
zingoo/rna_bench baruzzo-docker-v0.1

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: almost 2 years ago - 9 downloads - 272 dependencies
nfcore/cellranger_clean 3.0.2.9002

Mirror of universc Single cell tooling - cellranger_clean

  • version: 1.7-1
  • arch: amd64
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 6 downloads - 1,995 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.10-3
  • arch: amd64
  • distro: ubuntu-20.04
Latest release: over 1 year ago - 35 downloads - 1,720 dependencies