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Package Usage : deb : ubuntu/libhts3

Explore the latest package usage data for ubuntu/libhts3 in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 116
Total downloads: 32,283,172
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

wilfriedguiblet/isomir v0.3

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 286 downloads - 1,657 dependencies
lukewojenski/samtools 1.13

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 23 downloads - 120 dependencies
mqmnd/samtools arm-1.13

  • version: 1.13 ds-2build1
  • arch: arm64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 154 downloads - 120 dependencies
elle72/basic pygenometrack

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: 7 months ago - 56,112 downloads - 397 dependencies
sridnona/igv_reports v1.7.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 193 downloads - 371 dependencies
intelliseqngs/task_gtc-to-vcf 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 47 downloads - 635 dependencies
tercen/tracer_docker_operator 0.1.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 119 downloads - 826 dependencies
eppicenter/mad4hatter sha-cb4911b

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: 4 months ago - 821 downloads - 739 dependencies
prosyslab/bug-bench-segemehl 20210806

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 31 downloads - 264 dependencies
nciccbr/charlie_index latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 52 downloads - 709 dependencies
ctomlins/score latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 47 downloads - 799 dependencies
intelliseqngs/igv 3.0.3

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 3,196 downloads - 509 dependencies
wao2/kraken2_container latest

  • version: 1.13+ds-2build1
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htslib
Latest release: over 2 years ago - 31 downloads - 191 dependencies
intelliseqngs/task_phasing-eagle-without-ref-data 3.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 65 downloads - 256 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 1,072 downloads - 681 dependencies
intelliseqngs/prodia_task_mobigen-models 1.1.4

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 237 downloads - 416 dependencies
intelliseqngs/prodia_task_gtc-to-vcf-grch38-no-alt 1.0.4

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 241 downloads - 635 dependencies
mfsentma/atacseq latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 36 downloads - 852 dependencies
nciccbr/ccrgb_annovar v1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 147 downloads - 854 dependencies
nciccbr/ccrgb_hlaminer v2

  • version: 1.10.2-3ubuntu0.1, 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 343 downloads - 713 dependencies
salvacasani/bwa latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 193 downloads - 235 dependencies
harrisonjg/freyja v1.3.11

  • version: 1.13 ds-2build2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.10
Latest release: about 3 years ago - 195 downloads - 501 dependencies
broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.13+ds-2build1
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htslib
Latest release: 10 months ago - 40,749,690 downloads - 513 dependencies
nahyunkong/mito v6

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 16,889 downloads - 2,488 dependencies
souckmi/arriba 1.7

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 185 downloads - 310 dependencies
biodufpa/pp2oa advanced

  • version: 1.13 ds-2build2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.10
Latest release: over 2 years ago - 100 downloads - 1,124 dependencies
aminhaghparast/orad V.2

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 42 downloads - 441 dependencies
hoonbiolab/genepattern_aa v19.1

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 6 downloads - 628 dependencies
vanallenlab/g2c-vep bigWigFileOpen

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • distro: ubuntu-20.04
  • upstream: htslib
Latest release: 3 months ago - 11,589 downloads - 760 dependencies
hailgenetics/vep-grch37-85 0.2.135

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: 8 months ago - 3,675 downloads - 367 dependencies
bsceapm/ahatool 2.2

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 259 downloads - 40 dependencies
jluebeck/ampliconsuite-pipeline v1.3.9

Docker image for AmpliconSuite-pipeline. Runscripts available at https://github.com/AmpliconSuite

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • distro: ubuntu-20.04
  • upstream: htslib
Latest release: 8 months ago - 4,799 downloads - 320 dependencies
bioinforpi/nxf-bsbolt v0.0.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 16 downloads - 338 dependencies
cloxd/decontaminer 1.4

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 33 downloads - 199 dependencies
dhspence/docker-mocha latest

  • version: 1.10.2-5
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.10
Latest release: almost 5 years ago - 76 downloads - 433 dependencies
ctomlins/bash latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 25 downloads - 400 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 116 downloads - 1,382 dependencies
rosadesa/freec 0.5

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 60 downloads - 662 dependencies
zingoo/rna_bench baruzzo-docker-v0.1

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 37 downloads - 272 dependencies
hoonbiolab/hmftools_sv v.2.13.2

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 39 downloads - 856 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 42 downloads - 1,720 dependencies
sgiorgetti/api-build release-109-56

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 33 downloads - 399 dependencies
jieliu4wustl/vg liu.jie

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 51 downloads - 356 dependencies
medicinalgenomics/star latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 39 downloads - 168 dependencies
yunagaoka/ubuntu22.04 0.1.2

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 2 years ago - 26 downloads - 1,139 dependencies
mfsentma/rna latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 13 downloads - 807 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 1 year ago - 188 downloads - 4,337 dependencies
jieliu4wustl/wustl hisat3n

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 2 years ago - 5,700 downloads - 1,124 dependencies
bioxfu/ddngs latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: almost 3 years ago - 44 downloads - 1,055 dependencies
kuowenhsi/wen_omnic 1.2

Dovetail Omni-C pipeline

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 116 downloads - 374 dependencies
gailr/bamsurgeon-42123 latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 46 downloads - 432 dependencies
streptomyces/reciblast latest

Reciprocal blastp for Ainsley

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 112 downloads - 754 dependencies
alexwaldrop/freyja v1.3.11

  • version: 1.13 ds-2build2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.10
Latest release: about 3 years ago - 55 downloads - 376 dependencies
loukaszagkoslcpuk/lcphaomicsplink latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 493 downloads - 691 dependencies
pderouault/bamkin 1.0.3

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 52 downloads - 1,225 dependencies
mattiaficarellilcpuk/lcphaomicsbioinfotools latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 21 downloads - 727 dependencies
princessmaximacenter/gridss 2.13.2

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 160 downloads - 801 dependencies
qtulab/miniencode latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 217 downloads - 4,269 dependencies
nrminor/lowov-wgs v1.5

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 18 downloads - 1,524 dependencies
raveancic/typester latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 66 downloads - 280 dependencies
mmastert4/metamdbg 7ce646a

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 18 downloads - 258 dependencies
bsaintjo/dimelo cuda1200

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 81 downloads - 362 dependencies
meredith705/shasta latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 135 downloads - 268 dependencies
bigdatainbiomedicine/inspect-r latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 20 downloads - 643 dependencies
biocontainers/oncocnv v7.0_cv2

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 12,176 downloads - 307 dependencies
ndatth/pytorch v0.0.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 58 downloads - 232 dependencies
intelliseqngs/task_phasing-eagle 3.0.1-chrY-and-the-rest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 9,834 downloads - 235 dependencies
streptomyces/stage004 latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 17 downloads - 862 dependencies
ctomlins/winnowmap latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 6,287 downloads - 401 dependencies
maxfieldkelsey/snakesenescence latest

image for use in snakemake

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 52 downloads - 494 dependencies
mjinkm/mtrfind latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: about 3 years ago - 33 downloads - 255 dependencies
medicinalgenomics/bowtie2 latest

  • version: 1.13 ds-2build1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.04
Latest release: over 2 years ago - 31 downloads - 221 dependencies
intelliseqngs/task_vcf-uniq 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 5 years ago - 2,355 downloads - 806 dependencies
ashedpotatoes/clockwork-plus v0.12.5.3-CDC

CRyPTIC/IQBAL clockwork + reference genomes. More info: https://github.com/aofarrel/clockwork-wdl

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 1 year ago - 368,097 downloads - 1,500 dependencies
lsglh/txch_dup latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 6 downloads - 186 dependencies
ctomlins/talon latest

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • distro: ubuntu-20.04
  • upstream: htslib
Latest release: almost 3 years ago - 20 downloads - 315 dependencies
iamh2o/octosky 3

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 108 downloads - 1,588 dependencies
ctomlins/nanopore-rna-pipeline latest

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 4 years ago - 38 downloads - 717 dependencies
intelliseqngs/task_gtc-to-vcf-grch38-no-alt 1.1.0

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 1,332 downloads - 568 dependencies
ljanin/nirvanastandalone 1.1.1

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 2 years ago - 54 downloads - 576 dependencies
broadinstitute/terra-jupyter-aou 2.1.13

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 97,744 downloads - 4,112 dependencies
spvensko/mm2-fast 2.24

  • version: 1.16+ds-3
  • arch: amd64
  • distro: ubuntu-23.04
  • upstream: htslib
Latest release: over 2 years ago - 19 downloads - 232 dependencies
mgibio/cactus v2.9.7-lsof

  • version: 1.13+ds-2build1
  • arch: amd64
  • distro: ubuntu-22.04
  • upstream: htslib
Latest release: 9 months ago - 701 downloads - 171 dependencies
tipsarin/rstudio 4.1.3

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 60 downloads - 981 dependencies
tercen/tracer_docker_operator_base 1.0.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 4 years ago - 134 downloads - 812 dependencies
avneeshbt/braker_sep062022 latest

Braker with Augustus

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: over 3 years ago - 74 downloads - 719 dependencies
cgrlab/intervar v2.2.1

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 248 downloads - 857 dependencies
intelliseqngs/mobigen-models 5.3.4

  • version: 1.10.2-3ubuntu0.1
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: about 3 years ago - 1,629 downloads - 361 dependencies
nciccbr/ccbr_ngsderive v1.0

  • version: 1.10.2-3
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-20.04
Latest release: almost 3 years ago - 123 downloads - 862 dependencies
alexwaldrop/reads2variants v0.0

  • version: 1.13 ds-2build2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-22.10
Latest release: about 3 years ago - 169 downloads - 660 dependencies