Ecosyste.ms: Docker

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hoonbiolab/hmftools_cnv : v3.8.4

Ubuntu 20.04.6 LTS

Latest release: over 1 year ago - 13 downloads - 985 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.62.1
AnnotationFilter 1.24.0
BH 1.81.0-1
BSgenome 1.68.0
Biobase 2.60.0
BiocFileCache 2.8.0
BiocGenerics 0.46.0
BiocIO 1.10.0
BiocManager 1.30.20
BiocParallel 1.34.2
BiocVersion 3.17.1
Biostrings 2.68.1
DBI 1.1.3
DelayedArray 0.26.3
Formula 1.2-5
GenomeInfoDb 1.36.0
GenomeInfoDbData 1.2.10
GenomicAlignments 1.36.0
GenomicFeatures 1.52.0
GenomicRanges 1.52.0
Gviz 1.44.0
Hmisc 5.1-0
IRanges 2.34.0
KEGGREST 1.40.0
KernSmooth 2.23-21
MASS 7.3-60
Matrix 1.5-4.1
MatrixGenerics 1.12.0
ProtGenerics 1.32.0
R.cache 0.16.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
Rcpp 1.0.10
RcppEigen 0.3.3.9.3
Rhtslib 2.2.0
Rsamtools 2.16.0
S4Arrays 1.0.4
S4Vectors 0.38.1
StructuralVariantAnnotation 1.16.0
SummarizedExperiment 1.30.1
TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
TxDb.Hsapiens.UCSC.hg38.knownGene 3.17.0
VariantAnnotation 1.46.0
XML 3.99-0.14
XVector 0.40.0
argparser 0.7.1
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.3.0
biomaRt 2.56.0
biovizBase 1.48.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brio 1.1.3
broom 1.0.4
bslib 0.4.2
cachem 1.0.8
callr 3.7.3
cellranger 1.1.0
checkmate 2.2.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
compiler 4.3.0
conflicted 1.2.0
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
curl 5.0.0
data.table 1.14.8
datasets 4.3.0
dbplyr 2.3.2
deldir 1.0-9
desc 1.4.2
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.31
dplyr 1.1.2
dtplyr 1.3.1
ellipsis 0.3.2
ensembldb 2.24.0
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
filelock 1.0.2
fontawesome 0.5.1
forcats 1.0.0
foreign 0.8-84
formatR 1.14
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.4.0
generics 0.1.3
getopt 1.20.3
ggplot2 3.4.2
glue 1.6.2
googledrive 2.1.0
googlesheets4 1.1.0
grDevices 4.3.0
graphics 4.3.0
grid 4.3.0
gridExtra 2.3
gtable 0.3.3
haven 2.5.2
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.5
htmlwidgets 1.6.2
httr 1.4.6
ids 1.0.1
interp 1.1-4
isoband 0.2.7
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
lattice 0.21-8
latticeExtra 0.6-30
lazyeval 0.2.2
lifecycle 1.0.3
lubridate 1.9.2
magick 2.7.4
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.3.0
mgcv 1.8-42
mime 0.12
modelr 0.1.11
munsell 0.5.0
nlme 3.1-162
nnet 7.3-19
openssl 2.0.6
optparse 1.7.3
org.Hs.eg.db 3.17.0
org.testing.db 0.1
parallel 4.3.0
pillar 1.9.0
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
plyr 1.8.8
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.1
progress 1.2.2
ps 1.7.5
purrr 1.0.1
randomForest 4.7-1.1
rappdirs 0.3.3
readr 2.1.4
readxl 1.4.2
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
restfulr 0.0.15
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.21
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.60.0
rvest 1.0.3
sass 0.4.6
scales 1.2.1
selectr 0.4-2
snow 0.4-4
spatial 7.3-16
splines 4.3.0
stats4 4.3.0
stats 4.3.0
stringdist 0.9.10
stringi 1.7.12
stringr 1.5.0
survival 3.5-5
sys 3.4.2
systemfonts 1.0.4
tcltk 4.3.0
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.8
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
timechange 0.2.0
tinytex 0.45
tools 4.3.0
translations 4.3.0
tzdb 0.4.0
utf8 1.2.3
utils 4.3.0
uuid 1.1-0
vctrs 0.6.2
viridis 0.6.3
viridisLite 0.4.2
vroom 1.6.3
waldo 0.5.1
withr 2.5.0
xfun 0.39
xml2 1.3.4
yaml 2.3.7
zlibbioc 1.46.0

bash 5.0.17