gevrony/hidef-seq : 3.0_dev

Latest release: 6 months ago - 552 downloads - 765 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.68.0
BH 1.87.0-1
BSgenome 1.74.0
Biobase 2.66.0
BiocFileCache 2.14.0
BiocGenerics 0.52.0
BiocIO 1.16.0
BiocManager 1.30.25
BiocParallel 1.40.0
BiocVersion 3.20.0
Biostrings 2.74.1
DBI 1.2.3
DT 0.33
DelayedArray 0.32.0
GenomeInfoDb 1.42.3
GenomeInfoDbData 1.2.13
GenomicAlignments 1.42.0
GenomicFeatures 1.58.0
GenomicRanges 1.58.0
IRanges 2.40.1
KEGGREST 1.46.0
KernSmooth 2.23-26
Lahman 12.0-0
MASS 7.3-64
MASS 7.3-65
Matrix 1.7-2
Matrix 1.7-3
MatrixGenerics 1.18.1
QuickJSR 1.5.1
R6 2.6.1
RApiSerialize 0.1.4
RColorBrewer 1.1-3
RCurl 1.98-1.16
RMariaDB 1.3.3
RPostgres 1.4.7
RSQLite 2.3.9
RStanTest 0.0.0.9000
Rcpp 1.0.14
RcppEigen 0.3.4.0.2
RcppParallel 5.1.10
RcppTOML 0.2.2
Rhtslib 3.2.0
Rsamtools 2.22.0
S4Arrays 1.6.0
S4Vectors 0.44.0
SparseArray 1.6.1
StanHeaders 2.32.10
SummarizedExperiment 1.36.0
UCSC.utils 1.2.0
VariantAnnotation 1.52.0
XML 3.99-0.18
XVector 0.46.0
abind 1.4-8
ape 5.8-1
arrow 18.1.0.1
askpass 1.2.1
assertthat 0.2.1
backports 1.5.0
base64enc 0.1-3
base 4.4.2
bit64 4.6.0-1
bit 4.6.0
bitops 1.0-9
blob 1.2.4
boot 1.3-31
brew 1.0-10
brio 1.1.5
broom 1.0.8
bslib 0.9.0
cachem 1.1.0
callr 3.7.6
cellranger 1.1.0
checkmate 2.3.2
class 7.3-23
cli 3.6.3
clipr 0.8.0
clue 0.3-66
cluster 2.1.8
coda 0.19-4.1
codetools 0.2-20
collections 0.3.8
colorspace 2.1-1
commonmark 1.9.2
compiler 4.4.2
configr 0.3.5
conflicted 1.2.0
cpp11 0.5.2
crayon 1.5.3
credentials 2.0.2
crosstalk 1.2.1
curl 6.4.0
data.table 1.17.6
datasets 4.4.2
dbplyr 2.5.0
desc 1.4.3
devtools 2.4.5
diffobj 0.3.5
digest 0.6.37
distributional 0.5.0
docopt 0.7.1
downlit 0.4.4
dplyr 1.1.4
dtplyr 1.3.1
duckdb 1.3.1
duckplyr 1.1.1
ellipsis 0.3.2
evaluate 1.0.4
fansi 1.0.6
farver 2.1.2
fastmap 1.2.0
filelock 1.0.3
fontawesome 0.5.3
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formatR 1.14
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futile.logger 1.4.3
futile.options 1.0.1
gargle 1.5.2
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gert 2.1.4
getopt 1.20.4
ggplot2 3.5.2
gh 1.4.1
gitcreds 0.1.2
glue 1.8.0
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googlesheets4 1.1.1
grDevices 4.4.2
graphics 4.4.2
grid 4.4.2
gridExtra 2.3
gtable 0.3.6
haven 2.5.5
highr 0.11
hms 1.1.3
htmltools 0.5.8.1
htmlwidgets 1.6.4
httpuv 1.6.15
httr2 1.1.0
httr 1.4.7
ids 1.0.1
ini 0.3.1
inline 0.3.21
isoband 0.2.7
jquerylib 0.1.4
jsonlite 2.0.0
knitr 1.50
labeling 0.4.3
lambda.r 1.2.4
later 1.4.1
lattice 0.22-6
lattice 0.22-7
lazyeval 0.2.2
lifecycle 1.0.4
littler 0.3.20
loo 2.8.0
lubridate 1.9.4
magrittr 2.0.3
matrixStats 1.5.0
memoise 2.0.1
memuse 4.2-3
methods 4.4.2
mgcv 1.9-1
mgcv 1.9-3
mime 0.13
miniUI 0.1.1.1
modelr 0.1.11
munsell 0.5.1
nlme 3.1-167
nlme 3.1-168
nnet 7.3-20
numDeriv 2016.8-1.1
nycflights13 1.0.2
openssl 2.3.3
optparse 1.7.5
org.testing.db 0.1
parallel 4.4.2
permute 0.9-7
pillar 1.10.2
pinfsc50 1.3.0
pkgbuild 1.4.6
pkgconfig 2.0.3
pkgdown 2.1.1
pkgload 1.4.0
plogr 0.2.0
plyr 1.8.9
plyranges 1.26.0
png 0.1-8
posterior 1.6.0
praise 1.0.0
prettyunits 1.2.0
processx 3.8.6
profvis 0.4.0
progress 1.2.3
promises 1.3.2
ps 1.9.1
purrr 1.0.4
qs2 0.1.5
qs 0.27.2
ragg 1.4.0
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.5
readxl 1.4.5
rematch2 2.1.2
rematch 2.0.0
remotes 2.5.0
reprex 2.1.1
reshape2 1.4.4
restfulr 0.0.15
rjson 0.2.23
rlang 1.1.6
rmarkdown 2.29
roxygen2 7.3.2
rpart 4.1.24
rprojroot 2.0.4
rstan 2.32.6
rstantools 2.4.0
rstudioapi 0.17.1
rtracklayer 1.66.0
rversions 2.1.2
rvest 1.0.4
sass 0.4.10
scales 1.4.0
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.10.0
sigfit 2.2
snow 0.4-4
sourcetools 0.1.7-1
spatial 7.3-18
splines 4.4.2
stats4 4.4.2
stats 4.4.2
stringfish 0.16.0
stringi 1.8.7
stringr 1.5.1
survival 3.8-3
sys 3.4.3
systemfonts 1.2.3
tcltk 4.4.2
tensorA 0.36.2.1
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.2.3
textshaping 1.0.1
tibble 3.3.0
tidyr 1.3.1
tidyselect 1.2.1
tidyverse 2.0.0
timechange 0.3.0
tinytex 0.57
tools 4.4.2
translations 4.4.2
tzdb 0.5.0
urlchecker 1.0.1
usethis 3.1.0
utf8 1.2.6
utils 4.4.2
uuid 1.2-1
vcfR 1.15.0
vctrs 0.6.5
vegan 2.6-10
viridisLite 0.4.2
vroom 1.6.5
waldo 0.6.1
whisker 0.4.1
withr 3.0.2
xfun 0.52
xml2 1.3.8
xopen 1.0.1
xtable 1.8-4
yaml 2.3.10
zip 2.3.2
zlibbioc 1.52.0

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ubuntu/libsemanage2 3.5-1build5
ubuntu/libsensors-config 1:3.6.0-9build1
ubuntu/libsensors5 1:3.6.0-9build1
ubuntu/libsepol-dev 3.5-2build1
ubuntu/libsepol2 3.5-2build1
ubuntu/libsframe1 2.42-4ubuntu2.3
ubuntu/libsharpyuv-dev 1.3.2-0.4build3
ubuntu/libsharpyuv0 1.3.2-0.4build3
ubuntu/libsm-dev 2:1.2.3-1build3
ubuntu/libsm6 2:1.2.3-1build3
ubuntu/libsmartcols1 2.39.3-9ubuntu6.1
ubuntu/libsqlite3-0 3.45.1-1ubuntu2
ubuntu/libsqlite3-dev 3.45.1-1ubuntu2
ubuntu/libss2 1.47.0-2.4~exp1ubuntu4.1
ubuntu/libssh-4 0.10.6-2build2
ubuntu/libssh2-1-dev 1.11.0-4.1build2
ubuntu/libssh2-1t64 1.11.0-4.1build2
ubuntu/libssl-dev 3.0.13-0ubuntu3.4
ubuntu/libssl3t64 3.0.13-0ubuntu3.4
ubuntu/libstdc++-13-dev 13.3.0-6ubuntu2~24.04
ubuntu/libstdc++6 14.2.0-4ubuntu2~24.04
ubuntu/libstdlib-ocaml 4.14.1-1ubuntu1
ubuntu/libsystemd0 255.4-1ubuntu8.4
ubuntu/libtasn1-6 4.19.0-3build1
ubuntu/libthai-data 0.1.29-2build1
ubuntu/libthai0 0.1.29-2build1
ubuntu/libtiff-dev 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiff-doc 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiff-opengl 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiff-tools 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiff5-dev 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiff6 4.5.1+git230720-4ubuntu2.2
ubuntu/libtiffxx6 4.5.1+git230720-4ubuntu2.2
ubuntu/libtinfo6 6.4+20240113-1ubuntu2
ubuntu/libtsan2 14.2.0-4ubuntu2~24.04
ubuntu/libturbojpeg 1:2.1.5-2ubuntu2
ubuntu/libubsan1 14.2.0-4ubuntu2~24.04
ubuntu/libudev1 255.4-1ubuntu8.4
ubuntu/libunistring5 1.1-2build1
ubuntu/libuuid1 2.39.3-9ubuntu6.1
ubuntu/libvulkan1 1.3.275.0-1build1
ubuntu/libwebp-dev 1.3.2-0.4build3
ubuntu/libwebp7 1.3.2-0.4build3
ubuntu/libwebpdecoder3 1.3.2-0.4build3
ubuntu/libwebpdemux2 1.3.2-0.4build3
ubuntu/libwebpmux3 1.3.2-0.4build3
ubuntu/libx11-6 2:1.8.7-1build1
ubuntu/libx11-data 2:1.8.7-1build1
ubuntu/libx11-dev 2:1.8.7-1build1
ubuntu/libx11-xcb1 2:1.8.7-1build1
ubuntu/libxau-dev 1:1.0.9-1build6
ubuntu/libxau6 1:1.0.9-1build6
ubuntu/libxcb-dri2-0 1.15-1ubuntu2
ubuntu/libxcb-dri3-0 1.15-1ubuntu2
ubuntu/libxcb-glx0 1.15-1ubuntu2
ubuntu/libxcb-present0 1.15-1ubuntu2
ubuntu/libxcb-randr0 1.15-1ubuntu2
ubuntu/libxcb-render0-dev 1.15-1ubuntu2
ubuntu/libxcb-render0 1.15-1ubuntu2
ubuntu/libxcb-shm0-dev 1.15-1ubuntu2
ubuntu/libxcb-shm0 1.15-1ubuntu2
ubuntu/libxcb-sync1 1.15-1ubuntu2
ubuntu/libxcb-xfixes0 1.15-1ubuntu2
ubuntu/libxcb1-dev 1.15-1ubuntu2
ubuntu/libxcb1 1.15-1ubuntu2
ubuntu/libxdmcp-dev 1:1.1.3-0ubuntu6
ubuntu/libxdmcp6 1:1.1.3-0ubuntu6
ubuntu/libxext-dev 2:1.3.4-1build2
ubuntu/libxext6 2:1.3.4-1build2
ubuntu/libxfixes3 1:6.0.0-2build1
ubuntu/libxi6 2:1.8.1-1build1
ubuntu/libxml2-dev 2.9.14+dfsg-1.3ubuntu3
ubuntu/libxml2 2.9.14+dfsg-1.3ubuntu3
ubuntu/libxrender-dev 1:0.9.10-1.1build1
ubuntu/libxrender1 1:0.9.10-1.1build1
ubuntu/libxshmfence1 1.3-1build5
ubuntu/libxt6t64 1:1.2.1-1.2build1
ubuntu/libxtst6 2:1.2.3-1.1build1
ubuntu/libxxf86vm1 1:1.1.4-1build4
ubuntu/libxxhash0 0.8.2-2build1
ubuntu/libzstd-dev 1.5.5+dfsg2-2build1.1
ubuntu/libzstd1 1.5.5+dfsg2-2build1.1
ubuntu/linux-libc-dev 6.8.0-51.52
ubuntu/locales 2.39-0ubuntu8.3
ubuntu/login 1:4.13+dfsg1-4ubuntu3.2
ubuntu/logsave 1.47.0-2.4~exp1ubuntu4.1
ubuntu/lsb-release 12.0-2
ubuntu/make 4.3-4.1build2
ubuntu/mawk 1.3.4.20240123-1build1
ubuntu/media-types 10.1.0
ubuntu/mount 2.39.3-9ubuntu6.1
ubuntu/mysql-common 5.8+1.1.0build1
ubuntu/nano 7.2-2ubuntu0.1
ubuntu/ncurses-base 6.4+20240113-1ubuntu2
ubuntu/ncurses-bin 6.4+20240113-1ubuntu2
ubuntu/netbase 6.4
ubuntu/ocaml-base 4.14.1-1ubuntu1
ubuntu/openssl 3.0.13-0ubuntu3.4
ubuntu/pandoc 3.6.2-1
ubuntu/passwd 1:4.13+dfsg1-4ubuntu3.2
ubuntu/perl-base 5.38.2-3.2build2
ubuntu/perl-modules-5.38 5.38.2-3.2build2
ubuntu/perl 5.38.2-3.2build2
ubuntu/pkgconf-bin 1.8.1-2build1
ubuntu/pkgconf 1.8.1-2build1
ubuntu/procps 2:4.0.4-4ubuntu3.2
ubuntu/psmisc 23.7-1build1
ubuntu/pwgen 2.08-2build2
ubuntu/python-apt-common 2.7.7ubuntu3
ubuntu/python3-apt 2.7.7ubuntu3
ubuntu/python3-chardet 5.2.0+dfsg-1
ubuntu/python3-debian 0.1.49ubuntu2
ubuntu/python3-minimal 3.12.3-0ubuntu2
ubuntu/python3-packaging 24.0-1
ubuntu/python3-pkg-resources 68.1.2-2ubuntu1.1
ubuntu/python3.12-minimal 3.12.3-1ubuntu0.3
ubuntu/python3.12 3.12.3-1ubuntu0.3
ubuntu/python3 3.12.3-0ubuntu2
ubuntu/readline-common 8.2-4build1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu7
ubuntu/sed 4.9-2build1
ubuntu/sensible-utils 0.0.22
ubuntu/shared-mime-info 2.4-4
ubuntu/sudo 1.9.15p5-3ubuntu5
ubuntu/sysvinit-utils 3.08-6ubuntu3
ubuntu/tar 1.35+dfsg-3build1
ubuntu/tzdata 2024a-3ubuntu1.1
ubuntu/ubuntu-keyring 2023.11.28.1
ubuntu/unixodbc-common 2.3.12-1ubuntu0.24.04.1
ubuntu/unixodbc-dev 2.3.12-1ubuntu0.24.04.1
ubuntu/unzip 6.0-28ubuntu4.1
ubuntu/util-linux 2.39.3-9ubuntu6.1
ubuntu/uuid-dev 2.39.3-9ubuntu6.1
ubuntu/wget 1.21.4-1ubuntu4.1
ubuntu/x11-common 1:7.7+23ubuntu3
ubuntu/x11proto-core-dev 2023.2-1
ubuntu/x11proto-dev 2023.2-1
ubuntu/xfonts-encodings 1:1.0.5-0ubuntu2
ubuntu/xfonts-utils 1:7.7+6build3
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtrans-dev 1.4.0-1
ubuntu/zip 3.0-13ubuntu0.1
ubuntu/zlib1g-dev 1:1.3.dfsg-3.1ubuntu2.1
ubuntu/zlib1g 1:1.3.dfsg-3.1ubuntu2.1
ubuntu/zstd 1.5.5+dfsg2-2build1.1

git.sr.ht/~sbinet/gg v0.3.1
github.com/VividCortex/ewma v1.1.1
github.com/acarl005/stripansi v0.0.0-20180116102854-5a71ef0e047d
github.com/ajstarks/svgo v0.0.0-20211024235047-1546f124cd8b
github.com/biogo/biogo v1.0.4
github.com/biogo/hts v1.4.4
github.com/botond-sipos/thist v1.1.0
github.com/cespare/xxhash/v2 v2.1.2
github.com/cznic/sortutil v0.0.0-20181122101858-f5f958428db8
github.com/dsnet/compress v0.0.1
github.com/dustin/go-humanize v1.0.1
github.com/edsrzf/mmap-go v1.1.0
github.com/elliotwutingfeng/asciiset v0.0.0-20230602022725-51bbb787efab
github.com/fsnotify/fsnotify v1.5.4
github.com/go-fonts/liberation v0.3.0
github.com/go-latex/latex v0.0.0-20230307184459-12ec69307ad9
github.com/go-pdf/fpdf v0.6.0
github.com/golang/freetype v0.0.0-20170609003504-e2365dfdc4a0
github.com/iafan/cwalk v0.0.0-20210125030640-586a8832a711
github.com/klauspost/compress v1.17.5
github.com/klauspost/pgzip v1.2.6
github.com/logrusorgru/aurora v2.0.3+incompatible
github.com/mattn/go-colorable v0.1.13
github.com/mattn/go-isatty v0.0.16
github.com/mattn/go-runewidth v0.0.14
github.com/mitchellh/go-homedir v1.1.0
github.com/pkg/errors v0.9.1
github.com/rivo/uniseg v0.4.2
github.com/shenwei356/bio v0.13.7
github.com/shenwei356/breader v0.3.2
github.com/shenwei356/bwt v0.6.1
github.com/shenwei356/go-logging v0.0.0-20171012171522-c6b9702d88ba
github.com/shenwei356/natsort v0.0.0-20220117010048-580176ad49fb
github.com/shenwei356/seqkit/v2 v2.10.1-0.20250819073446-f6a29acd3a0d
github.com/shenwei356/stable v0.1.2
github.com/shenwei356/util v0.5.3
github.com/shenwei356/xopen v0.3.2
github.com/smallfish/simpleyaml v0.1.0
github.com/spf13/cobra v1.8.0
github.com/spf13/pflag v1.0.5
github.com/twotwotwo/sorts v0.0.0-20160814051341-bf5c1f2b8553
github.com/ulikunitz/xz v0.5.11
github.com/vbauerster/mpb/v5 v5.4.0
golang.org/x/crypto v0.35.0
golang.org/x/image v0.18.0
golang.org/x/sys v0.30.0
golang.org/x/term v0.29.0
golang.org/x/text v0.22.0
gonum.org/v1/plot v0.12.0
gopkg.in/yaml.v2 v2.4.0
stdlib 1.25.0

Distribution Information

Ubuntu 24.04.1 LTS

Pretty Name: Ubuntu 24.04.1 LTS
Name: Ubuntu
Id: ubuntu
Id Like: ["debian"]
Version: 24.04.1 LTS (Noble Numbat)
Version: 24.04
Version Codename: noble
Home Url: https://www.ubuntu.com/
Support Url: https://help.ubuntu.com/
Bug Report Url: https://bugs.launchpad.net/ubuntu/
Privacy Policy Url: https://www.ubuntu.com/legal/terms-and-policies/privacy-policy

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gevrony/hidef-seq : 3.0_dev

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