denglab/vpfkit : latest

Latest release: over 3 years ago - 73 downloads - 632 dependencies

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Dependencies

@PKGNAME@ @VERSION@
BH 1.81.0-1
Biobase 2.56.0
BiocGenerics 0.42.0
BiocManager 1.30.19
BiocNeighbors 1.14.0
BiocParallel 1.30.4
BiocSingular 1.12.0
Biostrings 2.64.1
DBI 1.1.3
DECIPHER 2.24.0
DelayedArray 0.22.0
DelayedMatrixStats 1.18.2
DirichletMultinomial 1.38.0
GenomeInfoDb 1.32.4
GenomeInfoDbData 1.2.8
GenomicRanges 1.48.0
IRanges 2.30.1
JBrowseR 0.9.1
KernSmooth 2.23-20
Lahman 10.0-1
MASS 7.3-58.1
MASS 7.3-58.2
Matrix 1.5-1
Matrix 1.5-3
MatrixGenerics 1.8.1
MultiAssayExperiment 1.22.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.10
RMariaDB 1.2.2
RPostgres 1.4.5
RSQLite 2.2.20
Rcpp 1.0.10
RcppArmadillo 0.11.4.3.1
RcppEigen 0.3.3.9.3
RcppHNSW 0.4.1
RcppML 0.3.7
Rtsne 0.16
S4Vectors 0.34.0
ScaledMatrix 1.4.1
SingleCellExperiment 1.18.1
SummarizedExperiment 1.26.1
TreeSummarizedExperiment 2.6.0
XVector 0.36.0
anytime 0.3.9
ape 5.6-2
aplot 0.1.9
arrow 10.0.1
askpass 1.1
assertthat 0.2.1
attachment 0.3.1
attempt 0.3.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
beachmat 2.12.0
beachtest 1.0.0
beeswarm 0.4.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.3
bslib 0.4.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.6.0
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
codetools 0.2-19
colorspace 2.1-0
commonmark 1.8.1
compiler 4.2.2
config 0.3.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.6
datasets 4.2.2
dbplyr 2.3.0
decontam 1.16.0
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
docopt 0.7.1
downlit 0.4.2
dplyr 1.1.0
dtplyr 1.2.2
duckdb 0.6.2
dummypackage 0.0.0.9000
ellipsis 0.3.2
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.0
fontawesome 0.5.0
forcats 1.0.0
foreign 0.8-83
formatR 1.14
fs 1.6.0
fst 0.9.8
fstcore 0.9.14
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.3.0
generics 0.1.3
gert 1.9.2
ggbeeswarm 0.7.1
ggforce 0.4.1
ggfun 0.0.9
ggnewscale 0.4.8
ggplot2 3.4.0
ggplotify 0.1.0
ggraph 2.1.0
ggrepel 0.9.3
ggtree 3.6.2
gh 1.3.1
gitcreds 0.1.2
glue 1.6.2
golem 0.3.5
googledrive 2.0.0
googlesheets4 1.0.1
grDevices 4.2.2
graphics 4.2.2
graphlayouts 0.8.4
grid 4.2.2
gridExtra 2.3
gridGraphics 0.5-1
gtable 0.3.1
haven 2.5.1
here 1.0.1
highr 0.10
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.8
httr 1.4.4
ids 1.0.1
igraph 1.3.5
ini 0.3.1
irlba 2.3.5.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
littler 0.3.17
lubridate 1.9.1
magrittr 2.0.3
markdown 1.5
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mia 1.4.0
miaViz 1.4.0
mime 0.12
miniUI 0.1.1.1
modelr 0.1.10
morebeach 1.0.0
morebeachtests 1.0.0
munsell 0.5.0
nlme 3.1-160
nlme 3.1-162
nnet 7.3-18
nycflights13 1.0.2
openssl 2.0.5
openxlsx 4.2.5.2
parallel 4.2.2
patchwork 1.1.2
permute 0.9-7
pillar 1.8.1
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
polyclip 1.10-4
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
projthis 0.0.0.9025
promises 1.2.0.1
ps 1.7.2
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
rcmdcheck 1.4.0
reactR 0.4.4
reactable 0.4.3
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
renv 0.16.0
reprex 2.0.2
reshape2 1.4.4
rlang 1.0.6
rmarkdown 2.20
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rsvd 1.0.5
rversions 2.1.2
rvest 1.0.3
sass 0.4.5
scales 1.2.1
scater 1.24.0
scuttle 1.6.3
selectr 0.4-2
sessioninfo 1.2.2
shiny 1.7.4
shinyWidgets 0.7.6
shinyexample 0.0.0.9000
shinythemes 1.2.0
snow 0.4-4
sourcetools 0.1.7-1
sparseMatrixStats 1.8.0
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.12
stringr 1.5.0
survival 3.4-0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
textshaping 0.3.6
tibble 3.1.8
tidygraph 1.2.3
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.4.2
tidyverse 1.3.2
timechange 0.2.0
tinytex 0.44
tools 4.2.2
translations 4.2.2
treeio 1.23.0
tweenr 2.0.2
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.2.2
uuid 1.1-0
vctrs 0.5.2
vegan 2.6-4
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.1
vpfkit 0.0.0.9003
vroom 1.6.1
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.37
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.6
zip 2.2.2
zlibbioc 1.42.0

bash 5.1.16
node 16.18.1
python 3.10.6

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actions/checkout v3
actions/setup-node v1
actions/setup-node v2
actions/setup-node v3
actions/setup-python v2
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google-github-actions/release-please-action v2

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abbrev 1.1.1
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bootstrap 5.2.2
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yallist 4.0.0

chardet 4.0.0
python-apt 2.4.0
python-debian 0.1.43ubuntu1

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