nfcore/airrflowreport : dev
Latest release: over 3 years ago - 1,053 downloads - 409 dependencies
JSONDependencies
- GenomicRanges 1.50.0
- IRanges 2.32.0
- KernSmooth 2.23-20
- @PKGNAME@ @VERSION@
- BH 1.81.0-1
- Biobase 2.58.0
- BiocGenerics 0.44.0
- BiocParallel 1.32.5
- Biostrings 2.66.0
- DT 0.27
- DelayedArray 0.24.0
- GenomeInfoDb 1.34.8
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.0
- openssl 2.0.5
- MASS 7.3-58.3
- Matrix 1.5-3
- MatrixGenerics 1.10.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- Rcpp 1.0.10
- RcppArmadillo 0.11.4.4.0
- RcppEigen 0.3.3.9.3
- Rhtslib 2.0.0
- Rsamtools 2.14.0
- S4Vectors 0.36.0
- SummarizedExperiment 1.28.0
- XVector 0.38.0
- ade4 1.7-22
- airr 1.4.1
- alakazam 1.2.1
- ape 5.7
- optparse 1.7.3
- aplot 0.1.9
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.2
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- bookdown 0.33
- brio 1.1.3
- bslib 0.4.2
- cachem 1.0.7
- callr 3.7.3
- cli 3.6.0
- clipr 0.8.0
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.8.1
- compiler 4.2.2
- cpp11 0.4.3
- crayon 1.5.2
- crosstalk 1.2.0
- curl 4.3.3
- data.table 1.14.8
- datasets 4.2.2
- desc 1.4.2
- diffobj 0.3.5
- digest 0.6.31
- diptest 0.76-0
- doParallel 1.0.17
- dowser 1.1.0
- dplyr 1.1.0
- ellipsis 0.3.2
- enchantr 0.0.6
- evaluate 0.20
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- fastmatch 1.1-3
- foreach 1.5.2
- formatR 1.14
- fs 1.6.1
- futile.logger 1.4.3
- futile.options 1.0.1
- generics 0.1.3
- getopt 1.20.3
- ggforce 0.4.1
- ggfun 0.0.9
- ggplot2 3.4.1
- ggplotify 0.1.0
- ggraph 2.1.0
- ggrepel 0.9.3
- ggtree 3.6.0
- glue 1.6.2
- grDevices 4.2.2
- graphics 4.2.2
- graphlayouts 0.8.4
- grid 4.2.2
- gridExtra 2.3
- gridGraphics 0.5-1
- gtable 0.3.1
- hexbin 1.28.2
- highr 0.10
- hms 1.1.2
- htmltools 0.5.4
- htmlwidgets 1.6.1
- httr 1.4.5
- igraph 1.4.1
- isoband 0.2.7
- iterators 1.0.14
- jquerylib 0.1.4
- jsonlite 1.8.4
- kableExtra 1.3.4
- kedd 1.0.3
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.20-45
- lazyeval 0.2.2
- lifecycle 1.0.3
- magrittr 2.0.3
- markdown 1.5
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.2.2
- mgcv 1.8-42
- mime 0.12
- munsell 0.5.0
- nlme 3.1-162
- parallel 4.2.2
- patchwork 1.1.2
- phangorn 2.11.1
- phylotate 1.3
- pillar 1.8.1
- pixmap 0.4-12
- pkgconfig 2.0.3
- pkgload 1.3.2
- plotly 4.10.1
- plyr 1.8.8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.8.0
- progress 1.2.2
- promises 1.2.0.1
- ps 1.7.2
- purrr 1.0.1
- quadprog 1.5-8
- rappdirs 0.3.3
- readr 2.1.4
- rematch2 2.1.2
- reshape2 1.4.4
- rlang 1.0.6
- rmarkdown 2.20
- rprojroot 2.0.3
- rstudioapi 0.14
- rvest 1.0.3
- sass 0.4.5
- scales 1.2.1
- scoper 1.2.1
- segmented 1.6-2
- selectr 0.4-2
- seqinr 4.2-23
- shazam 1.1.2
- snow 0.4-4
- sp 1.6-0
- splines 4.2.2
- stats4 4.2.2
- stats 4.2.2
- stringi 1.7.12
- stringr 1.5.0
- svglite 2.1.1
- sys 3.4.1
- systemfonts 1.0.4
- tcltk 4.2.2
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.6
- tibble 3.1.8
- tidygraph 1.2.3
- tidyr 1.3.0
- tidyselect 1.2.0
- tidytree 0.4.2
- tinytex 0.44
- tools 4.2.2
- translations 4.2.2
- treeio 1.22.0
- tweenr 2.0.2
- tzdb 0.3.0
- utf8 1.2.3
- utils 4.2.2
- vctrs 0.5.2
- viridis 0.6.2
- viridisLite 0.4.1
- vroom 1.6.1
- waldo 0.4.0
- webshot 0.5.4
- withr 2.5.0
- xfun 0.37
- xml2 1.3.3
- yaml 2.3.7
- yulab.utils 0.0.6
- zlibbioc 1.44.0
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.6
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates 20211016ubuntu0.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fdisk 2.34-0.1ubuntu9.3
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
- ubuntu/git-man 1:2.25.1-1ubuntu3.8
- ubuntu/git 1:2.25.1-1ubuntu3.8
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/libacl1 2.2.53-6
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libblkid1 2.34-0.1ubuntu9.3
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.15
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1 2.2.9-1ubuntu0.6
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.3
- ubuntu/libffi7 3.3-4
- ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
- ubuntu/libgdbm6 1.18.1-5
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.7
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.2
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/libk5crypto3 1.17-6ubuntu4.2
- ubuntu/libkeyutils1 1.6-6ubuntu1.1
- ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libkrb5-3 1.17-6ubuntu4.2
- ubuntu/libkrb5support0 1.17-6ubuntu4.2
- ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
- ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
- ubuntu/liblzma5 5.2.4-1ubuntu1.1
- ubuntu/libmount1 2.34-0.1ubuntu9.3
- ubuntu/libncurses6 6.2-0ubuntu2
- ubuntu/libncursesw6 6.2-0ubuntu2
- ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libnghttp2-14 1.40.0-1build1
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.4
- ubuntu/libpam-modules 1.3.1-5ubuntu4.4
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.4
- ubuntu/libpam0g 1.3.1-5ubuntu4.4
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
- ubuntu/libpcre3 2:8.39-12ubuntu0.1
- ubuntu/libperl5.30 5.30.0-9ubuntu0.3
- ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
- ubuntu/libpsl5 0.21.0-1ubuntu1
- ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
- ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
- ubuntu/libss2 1.45.5-2ubuntu1.1
- ubuntu/libssh-4 0.9.3-2ubuntu2.2
- ubuntu/libssl1.1 1.1.1f-1ubuntu2.16
- ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
- ubuntu/libsystemd0 245.4-4ubuntu3.19
- ubuntu/libtasn1-6 4.16.0-2
- ubuntu/libtinfo6 6.2-0ubuntu2
- ubuntu/libudev1 245.4-4ubuntu3.19
- ubuntu/libunistring2 0.9.10-2
- ubuntu/libuuid1 2.34-0.1ubuntu9.3
- ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.3
- ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
- ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/logsave 1.45.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu2
- ubuntu/mawk 1.3.4.20200120-2
- ubuntu/mount 2.34-0.1ubuntu9.3
- ubuntu/ncurses-base 6.2-0ubuntu2
- ubuntu/ncurses-bin 6.2-0ubuntu2
- ubuntu/openssl 1.1.1f-1ubuntu2.16
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/perl-base 5.30.0-9ubuntu0.3
- ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
- ubuntu/perl 5.30.0-9ubuntu0.3
- ubuntu/procps 2:3.3.16-1ubuntu2.3
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
- ubuntu/tini 0.18.0-1
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/util-linux 2.34-0.1ubuntu9.3
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5
- airr 1.4.1
- argcomplete 2.1.1
- biopython 1.77
- PySocks 1.7.1
- PyYAML 6.0
- brotlipy 0.7.0
- certifi 2022.12.7
- cffi 1.15.1
- changeo 1.3.0
- charset-normalizer 2.1.1
- conda-package-handling 2.0.2
- conda 22.9.0
- conda_package_streaming 0.7.0
- cryptography 38.0.4
- cryptography 39.0.2
- idna 3.4
- libmambapy 1.1.0
- mamba 1.1.0
- mypy 0.931
- numpy 1.24.2
- packaging 23.0
- pandas 1.5.3
- pip 22.3.1
- pip 23.0.1
- platformdirs 3.1.0
- pooch 1.7.0
- presto 0.7.1
- pyOpenSSL 22.1.0
- pyOpenSSL 23.0.0
- pycosat 0.6.4
- pycparser 2.21
- pydata-sphinx-theme 0.9.0
- python-dateutil 2.8.2
- pytz 2022.7.1
- requests 2.28.1
- requests 2.28.2
- ruamel-yaml-conda 0.15.80
- scipy 1.10.1
- setuptools 65.6.3
- setuptools 67.5.1
- six 1.16.0
- toml 0.10.2
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- typing_extensions 4.4.0
- urllib3 1.26.13
- urllib3 1.26.14
- wheel 0.38.4
- xmltodict 0.13.0
- yamlordereddictloader 0.4.0
- yq 3.1.1
- zstandard 0.19.0
- edirect (devel)
- github.com/fatih/color v1.12.0
- github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
- github.com/klauspost/cpuid v1.3.1
- github.com/mattn/go-colorable v0.1.8
- github.com/mattn/go-isatty v0.0.12
- github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
- github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
- github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
- golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
- golang.org/x/text v0.3.7
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- casperjs 1.1.0-beta5