Ecosyste.ms: Docker

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hoonbiolab/hmftools_sv : v.2.13.2

Latest release: almost 2 years ago - 9 downloads - 856 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.78.0-0
BSgenome 1.66.2
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.19
BiocParallel 1.32.5
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DelayedArray 0.24.0
GenomeInfoDb 1.34.6
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicFeatures 1.50.3
GenomicRanges 1.50.2
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-3
MatrixGenerics 1.10.0
R.cache 0.16.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RSQLite 2.2.20
Rcpp 1.0.9
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.1
StructuralVariantAnnotation 1.13.0
SummarizedExperiment 1.28.0
TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
TxDb.Hsapiens.UCSC.hg38.knownGene 3.16.0
VariantAnnotation 1.44.0
XML 3.99-0.13
XVector 0.38.0
argparser 0.7.1
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28.1
brio 1.1.3
broom 1.0.2
bslib 0.4.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.6.0
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
compiler 4.2.2
copynumber 1.38.0
cpp11 0.4.3
crayon 1.5.2
curl 5.0.0
data.table 1.14.6
datasets 4.2.2
dbplyr 2.3.0
desc 1.4.2
diffobj 0.3.5
digest 0.6.31
dplyr 1.0.10
dtplyr 1.2.2
ellipsis 0.3.2
evaluate 0.20
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
filelock 1.0.2
forcats 0.5.2
foreign 0.8-84
formatR 1.14
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.1
generics 0.1.3
ggplot2 3.4.0
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.1
haven 2.5.1
highr 0.10
hms 1.1.2
htmltools 0.5.4
httr 1.4.4
ids 1.0.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.3
lubridate 1.9.0
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
modelr 0.1.10
munsell 0.5.0
nlme 3.1-161
nnet 7.3-18
openssl 2.0.5
org.Hs.eg.db 3.16.0
org.testing.db 0.1
parallel 4.2.2
pillar 1.8.1
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
progress 1.2.2
ps 1.7.2
purrr 1.0.1
randomForest 4.7-1.1
rappdirs 0.3.3
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
restfulr 0.0.15
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.19
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.58.0
rvest 1.0.3
sass 0.4.4
scales 1.2.1
selectr 0.4-2
snow 0.4-4
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringdist 0.9.10
stringi 1.7.12
stringr 1.5.0
survival 3.5-0
sys 3.4.1
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tidyverse 1.3.2
timechange 0.2.0
tinytex 0.43
tools 4.2.2
translations 4.2.2
tzdb 0.3.0
utf8 1.2.2
utils 4.2.2
uuid 1.1-0
vctrs 0.5.1
viridisLite 0.4.1
vroom 1.6.0
waldo 0.4.0
withr 2.5.0
xfun 0.36
xml2 1.3.3
yaml 2.3.6
zlibbioc 1.44.0

bash 5.0.17