Ecosyste.ms: Docker

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qdidiscoveryservices/limma-voom : 4.2.0

Ubuntu 20.04.4 LTS

Latest release: over 2 years ago - 1,002 downloads - 1,382 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.58.0
BH 1.78.0-0
Biobase 2.56.0
BiocGenerics 0.42.0
BiocManager 1.30.17
BiocParallel 1.30.0
BiocVersion 3.15.2
Biostrings 2.64.0
DBI 1.1.2
DESeq2 1.36.0
DEoptimR 1.0-11
DelayedArray 0.22.0
GenomeInfoDb 1.32.1
GenomeInfoDbData 1.2.8
GenomicRanges 1.48.0
Glimma 2.6.0
IRanges 2.30.0
KEGGREST 1.36.0
KernSmooth 2.23-20
Lahman 10.0-1
MASS 7.3-56
Matrix 1.4-1
MatrixGenerics 1.8.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.6
RMariaDB 1.2.1
RPostgres 1.4.4
RSQLite 2.2.14
Rcpp 1.0.8.3
RcppArmadillo 0.11.0.0.0
S4Vectors 0.34.0
SummarizedExperiment 1.26.1
XML 3.99-0.9
XVector 0.36.0
annotate 1.74.0
argparse 2.1.5
arrow 8.0.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.0
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-7
brio 1.1.3
broom 0.8.0
bslib 0.3.1
cachem 1.0.6
callr 3.7.0
cellranger 1.1.0
class 7.3-20
cli 3.3.0
clipr 0.8.0
cluster 2.1.3
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.0
compiler 4.2.0
cpp11 0.4.2
crayon 1.5.1
credentials 1.3.2
curl 4.3.2
data.table 1.14.2
datasets 4.2.0
dbplyr 2.1.1
desc 1.4.1
devtools 2.4.3
diffobj 0.3.5
digest 0.6.29
docopt 0.7.1
dplyr 1.0.9
dtplyr 1.2.1
duckdb 0.3.2-2
edgeR 3.38.0
ellipsis 0.3.2
evaluate 0.15
fansi 1.0.3
farver 2.1.0
fastmap 1.1.0
findpython 1.0.7
forcats 0.5.1
foreign 0.8-82
formatR 1.12
fs 1.5.2
fst 0.9.8
fstcore 0.9.12
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.0
genefilter 1.78.0
geneplotter 1.74.0
generics 0.1.2
gert 1.6.0
ggbiplot 0.55
ggfortify 0.4.14
ggplot2 3.3.6
gh 1.3.0
gitcreds 0.1.1
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.0
grDevices 4.2.0
graphics 4.2.0
grid 4.2.0
gridExtra 2.3
gtable 0.3.0
haven 2.5.0
highr 0.9
hms 1.1.1
htmltools 0.5.2
htmlwidgets 1.5.4
httr 1.4.3
ids 1.0.1
ini 0.3.1
isoband 0.2.5
jquerylib 0.1.4
jsonlite 1.8.0
knitr 1.39
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.1
limma 3.52.0
littler 0.3.15
locfit 1.5-9.5
lubridate 1.8.0
magrittr 2.0.3
matrixStats 0.62.0
memoise 2.0.1
methods 4.2.0
mgcv 1.8-40
mime 0.12
modelr 0.1.8
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-157
nnet 7.3-17
nycflights13 1.0.2
openssl 2.0.0
org.testing.db 0.1
parallel 4.2.0
pcaPP 2.0-1
pillar 1.7.0
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgload 1.2.4
plogr 0.2.0
plyr 1.8.7
png 0.1-7
praise 1.0.0
prettyunits 1.1.1
processx 3.5.3
progress 1.2.2
ps 1.7.0
purrr 0.3.4
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.2
readxl 1.4.0
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.1
reshape2 1.4.4
rlang 1.0.2
rmarkdown 2.14
robustbase 0.95-0
roxygen2 7.1.2
rpart 4.1.16
rprojroot 2.0.3
rrcov 1.7-0
rstudioapi 0.13
rversions 2.1.1
rvest 1.0.2
sass 0.4.1
scales 1.2.0
selectr 0.4-2
sessioninfo 1.2.2
snow 0.4-4
spatial 7.3-15
splines 4.2.0
statmod 1.4.36
stats4 4.2.0
stats 4.2.0
stringi 1.7.6
stringr 1.4.0
survival 3.3-1
sys 3.4
tcltk 4.2.0
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.4
tibble 3.1.7
tidyr 1.2.0
tidyselect 1.1.2
tidyverse 1.3.1
tinytex 0.38
tools 4.2.0
translations 4.2.0
tzdb 0.3.0
usethis 2.1.5
utf8 1.2.2
utils 4.2.0
uuid 1.1-0
vctrs 0.4.1
viridisLite 0.4.0
vroom 1.5.7
waldo 0.4.0
whisker 0.4
withr 2.5.0
xfun 0.31
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.5
zip 2.2.0
zlibbioc 1.42.0

ubuntu/adduser 3.118ubuntu2
ubuntu/apt 2.0.6
ubuntu/autoconf 2.69-11.1
ubuntu/automake 1:1.16.1-4ubuntu6
ubuntu/autotools-dev 20180224.1
ubuntu/base-files 11ubuntu5.5
ubuntu/base-passwd 3.5.47
ubuntu/bash-completion 1:2.10-1ubuntu1
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/binutils-common 2.34-6ubuntu1.3
ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.3
ubuntu/binutils 2.34-6ubuntu1.3
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates-java 20190405ubuntu1
ubuntu/ca-certificates 20210119~20.04.2
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
ubuntu/cpp 4:9.3.0-1ubuntu2
ubuntu/dash 0.5.10.2-6
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/default-libmysqlclient-dev 1.0.5ubuntu2
ubuntu/diffutils 1:3.7-3
ubuntu/dirmngr 2.2.19-3ubuntu2.1
ubuntu/distro-info-data 0.43ubuntu1.10
ubuntu/dpkg 1.19.7ubuntu3
ubuntu/e2fsprogs 1.45.5-2ubuntu1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/file 1:5.38-4
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/fontconfig-config 2.13.1-2ubuntu3
ubuntu/fontconfig 2.13.1-2ubuntu3
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/fonts-lmodern 2.004.5-6
ubuntu/fonts-texgyre 20180621-3
ubuntu/freeglut3 2.8.1-3
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ubuntu/g 4:9.3.0-1ubuntu2
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
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ubuntu/gcc 4:9.3.0-1ubuntu2
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ubuntu/gfortran 4:9.3.0-1ubuntu2
ubuntu/git-man 1:2.25.1-1ubuntu3.4
ubuntu/git 1:2.25.1-1ubuntu3.4
ubuntu/gpg-agent 2.2.19-3ubuntu2.1
ubuntu/gpgv 2.2.19-3ubuntu2.1
ubuntu/grep 3.4-1
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ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/icu-devtools 66.1-2ubuntu2.1
ubuntu/init-system-helpers 1.57
ubuntu/java-common 0.72
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ubuntu/lib32stdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libacl1 2.2.53-6
ubuntu/libapparmor1 2.13.3-7ubuntu5.1
ubuntu/libapt-pkg6.0 2.0.6
ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
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ubuntu/libc6-i386 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
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ubuntu/libcairo-script-interpreter2 1.16.0-4ubuntu1
ubuntu/libcairo2-dev 1.16.0-4ubuntu1
ubuntu/libcairo2 1.16.0-4ubuntu1
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
ubuntu/libclang-10-dev 1:10.0.0-4ubuntu1
ubuntu/libclang-common-10-dev 1:10.0.0-4ubuntu1
ubuntu/libclang-dev 1:10.0-50~exp1
ubuntu/libclang1-10 1:10.0.0-4ubuntu1
ubuntu/libcom-err2 1.45.5-2ubuntu1
ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libctf-nobfd0 2.34-6ubuntu1.3
ubuntu/libctf0 2.34-6ubuntu1.3
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.11
ubuntu/libcurl4-openssl-dev 7.68.0-1ubuntu2.11
ubuntu/libcurl4 7.68.0-1ubuntu2.11
ubuntu/libdatrie1 0.2.12-3
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/libdpkg-perl 1.19.7ubuntu3
ubuntu/libdrm-amdgpu1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-common 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-intel1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-nouveau2 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-radeon1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm2 2.4.107-8ubuntu1~20.04.2
ubuntu/libedit2 3.1-20191231-1
ubuntu/libelf1 0.176-1.1build1
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1-dev 2.2.9-1ubuntu0.4
ubuntu/libexpat1 2.2.9-1ubuntu0.4
ubuntu/libext2fs2 1.45.5-2ubuntu1
ubuntu/libfakeroot 1.24-1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi-dev 3.3-4
ubuntu/libffi7 3.3-4
ubuntu/libfindlib-ocaml 1.8.1-1build3
ubuntu/libfontconfig1-dev 2.13.1-2ubuntu3
ubuntu/libfontconfig1 2.13.1-2ubuntu3
ubuntu/libfreetype-dev 2.10.1-2ubuntu0.1
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ubuntu/libfreetype6 2.10.1-2ubuntu0.1
ubuntu/libfribidi0 1.0.8-2ubuntu0.1
ubuntu/libgc1c2 1:7.6.4-0.4ubuntu1
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ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20-dev 1.8.5-5ubuntu1.1
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
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ubuntu/libgfortran5 10.3.0-1ubuntu1~20.04
ubuntu/libgit2-28 0.28.4 dfsg.1-2
ubuntu/libgit2-dev 0.28.4 dfsg.1-2
ubuntu/libgl1-mesa-dri 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libgl1-mesa-glx 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libgl1 1.3.2-1~ubuntu0.20.04.2
ubuntu/libglapi-mesa 21.2.6-0ubuntu0.1~20.04.2
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ubuntu/libglib2.0-data 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev-bin 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev 2.64.6-1~ubuntu20.04.4
ubuntu/libglvnd0 1.3.2-1~ubuntu0.20.04.2
ubuntu/libglx-mesa0 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libglx0 1.3.2-1~ubuntu0.20.04.2
ubuntu/libgmp10 2:6.2.0 dfsg-4
ubuntu/libgnutls30 3.6.13-2ubuntu1.6
ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
ubuntu/libgpg-error-dev 1.37-1
ubuntu/libgpg-error0 1.37-1
ubuntu/libgraphite2-3 1.3.13-11build1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libharfbuzz0b 2.6.4-1ubuntu4
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhttp-parser-dev 2.9.2-2
ubuntu/libhttp-parser2.9 2.9.2-2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libice-dev 2:1.0.10-0ubuntu1
ubuntu/libice6 2:1.0.10-0ubuntu1
ubuntu/libicu-dev 66.1-2ubuntu2.1
ubuntu/libicu-le-hb0 1.0.3 git180724-3build2
ubuntu/libicu4j-4.4-java 4.4.2.2-3
ubuntu/libicu4j-java-doc 62.1-2
ubuntu/libicu4j-java 62.1-2
ubuntu/libicu66 66.1-2ubuntu2.1
ubuntu/libidn2-0 2.2.0-2
ubuntu/libisl22 0.22.1-1
ubuntu/libitm1 10.3.0-1ubuntu1~20.04
ubuntu/libjbig0 2.1-3.1build1
ubuntu/libjpeg-turbo-progs 2.0.3-0ubuntu1.20.04.1
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ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.1
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libk5crypto3 1.17-6ubuntu4.1
ubuntu/libkeyutils1 1.6-6ubuntu1
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1
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ubuntu/libkrb5support0 1.17-6ubuntu4.1
ubuntu/liblapack-dev 3.9.0-1build1
ubuntu/liblapack3 3.9.0-1build1
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.8
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.8
ubuntu/libllvm10 1:10.0.0-4ubuntu1
ubuntu/libllvm12 1:12.0.0-3ubuntu1~20.04.5
ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
ubuntu/libltdl-dev 2.4.6-14
ubuntu/libltdl7 2.4.6-14
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma-doc 5.2.4-1ubuntu1.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/liblzo2-2 2.10-2
ubuntu/libmagic-mgc 1:5.38-4
ubuntu/libmagic1 1:5.38-4
ubuntu/libmbedcrypto3 2.16.4-1ubuntu2
ubuntu/libmbedtls-dev 2.16.4-1ubuntu2
ubuntu/libmbedtls12 2.16.4-1ubuntu2
ubuntu/libmbedx509-0 2.16.4-1ubuntu2
ubuntu/libmount-dev 2.34-0.1ubuntu9.3
ubuntu/libmount1 2.34-0.1ubuntu9.3
ubuntu/libmpc3 1.1.0-1
ubuntu/libmpdec2 2.4.2-3
ubuntu/libmpfr6 4.0.2-1
ubuntu/libmysqlclient-dev 8.0.29-0ubuntu0.20.04.3
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ubuntu/libncursesw6 6.2-0ubuntu2
ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libnghttp2-14 1.40.0-1build1
ubuntu/libobjc-9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libobjc4 10.3.0-1ubuntu1~20.04
ubuntu/libodbc1 2.3.6-0.1build1
ubuntu/libopenblas-dev 0.3.8 ds-1ubuntu0.20.04.1
ubuntu/libopenblas-pthread-dev 0.3.8 ds-1ubuntu0.20.04.1
ubuntu/libopenblas0-pthread 0.3.8 ds-1ubuntu0.20.04.1
ubuntu/libopenblas0 0.3.8 ds-1ubuntu0.20.04.1
ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.3
ubuntu/libpam-modules 1.3.1-5ubuntu4.3
ubuntu/libpam-runtime 1.3.1-5ubuntu4.3
ubuntu/libpam0g 1.3.1-5ubuntu4.3
ubuntu/libpango-1.0-0 1.44.7-2ubuntu4
ubuntu/libpangocairo-1.0-0 1.44.7-2ubuntu4
ubuntu/libpangoft2-1.0-0 1.44.7-2ubuntu4
ubuntu/libpaper1 1.1.28
ubuntu/libpciaccess0 0.16-0ubuntu1
ubuntu/libpcre16-3 2:8.39-12build1
ubuntu/libpcre2-16-0 10.34-7
ubuntu/libpcre2-32-0 10.34-7
ubuntu/libpcre2-8-0 10.34-7
ubuntu/libpcre2-dev 10.34-7
ubuntu/libpcre2-posix2 10.34-7
ubuntu/libpcre3-dev 2:8.39-12build1
ubuntu/libpcre32-3 2:8.39-12build1
ubuntu/libpcre3 2:8.39-12build1
ubuntu/libpcrecpp0v5 2:8.39-12build1
ubuntu/libperl5.30 5.30.0-9ubuntu0.2
ubuntu/libpixman-1-0 0.38.4-0ubuntu1
ubuntu/libpixman-1-dev 0.38.4-0ubuntu1
ubuntu/libpng-dev 1.6.37-2
ubuntu/libpng16-16 1.6.37-2
ubuntu/libpq-dev 12.10-0ubuntu0.20.04.1
ubuntu/libpq5 12.10-0ubuntu0.20.04.1
ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libpthread-stubs0-dev 0.4-1
ubuntu/libpython2-stdlib 2.7.17-2ubuntu4
ubuntu/libpython2.7-minimal 2.7.18-1~20.04.1
ubuntu/libpython2.7-stdlib 2.7.18-1~20.04.1
ubuntu/libpython3-stdlib 3.8.2-0ubuntu2
ubuntu/libpython3.8-minimal 3.8.10-0ubuntu1~20.04.4
ubuntu/libpython3.8-stdlib 3.8.10-0ubuntu1~20.04.4
ubuntu/libquadmath0 10.3.0-1ubuntu1~20.04
ubuntu/libreadline8 8.0-4
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
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ubuntu/libselinux1-dev 3.0-1build2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsensors-config 1:3.6.0-2ubuntu1.1
ubuntu/libsensors5 1:3.6.0-2ubuntu1.1
ubuntu/libsepol1-dev 3.0-1ubuntu0.1
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsigsegv2 2.12-2
ubuntu/libsm-dev 2:1.2.3-1
ubuntu/libsm6 2:1.2.3-1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.3
ubuntu/libsqlite3-dev 3.31.1-4ubuntu0.3
ubuntu/libss2 1.45.5-2ubuntu1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssh2-1-dev 1.8.0-2.1build1
ubuntu/libssh2-1 1.8.0-2.1build1
ubuntu/libssl-dev 1.1.1f-1ubuntu2.13
ubuntu/libssl1.1 1.1.1f-1ubuntu2.13
ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.16
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libthai-data 0.1.28-3
ubuntu/libthai0 0.1.28-3
ubuntu/libtiff-doc 4.1.0 git191117-2ubuntu0.20.04.2
ubuntu/libtiff-opengl 4.1.0 git191117-2ubuntu0.20.04.2
ubuntu/libtiff-tools 4.1.0 git191117-2ubuntu0.20.04.2
ubuntu/libtiff5 4.1.0 git191117-2ubuntu0.20.04.2
ubuntu/libtiffxx5 4.1.0 git191117-2ubuntu0.20.04.2
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libtsan0 10.3.0-1ubuntu1~20.04
ubuntu/libturbojpeg 2.0.3-0ubuntu1.20.04.1
ubuntu/libubsan1 10.3.0-1ubuntu1~20.04
ubuntu/libudev1 245.4-4ubuntu3.16
ubuntu/libunistring2 0.9.10-2
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bash 5.0.17

github.com/evanw/esbuild (devel)
golang.org/x/sys v0.0.0-20200501145240-bc7a7d42d5c3
stdlib 1.16.3

com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
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