Ecosyste.ms: Docker

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mesti90/ecoli_hgt_all_in : 1.1

Ubuntu 23.04

Latest release: about 1 year ago - 88 downloads - 1,148 dependencies

Dependencies

BMS 0.3.3
BactDating 1.1.0
BiocGenerics 0.44.0
BiocManager 1.30.19
BiocVersion 3.16.0
Biostrings 2.66.0
Cairo 1.6-0
DBI 1.1.3
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
IRanges 2.32.0
KernSmooth 2.23-20
MASS 7.3-58.2
Matrix 1.5-3
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.10
Rcpp 1.0.10
Rcpp 1.0.11
RcppArmadillo 0.12.0.1.0
S4Vectors 0.36.1
XVector 0.38.0
ade4 1.7-22
ape 5.6-2
ape 5.7-1
aplot 0.2.0
askpass 1.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom 1.0.5
bslib 0.4.2
cachem 1.0.6
callr 3.7.3
caper 1.0.2
cellranger 1.1.0
class 7.3-21
cli 3.6.0
clipr 0.8.0
cluster 2.1.4
clusterGeneration 1.3.7
coda 0.19-4
codetools 0.2-19
colorspace 2.1-0
combinat 0.0-8
commonmark 1.8.1
compiler 4.2.2
conflicted 1.2.0
covr 3.6.2
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
curl 5.0.0
curl 5.0.2
data.table 1.14.8
datasets 4.2.2
dbplyr 2.3.3
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
digest 0.6.33
downlit 0.4.2
dplyr 1.1.3
dtplyr 1.3.1
ellipsis 0.3.2
evaluate 0.20
expm 0.999-7
fansi 1.0.4
farver 2.1.1
fastmap 1.1.0
fastmatch 1.1-3
feather 0.3.5
fontawesome 0.5.0
forcats 1.0.0
foreign 0.8-84
fs 1.6.1
gargle 1.5.2
generics 0.1.3
gert 1.9.2
getopt 1.20.3
ggfun 0.1.2
ggplot2 3.4.1
ggplotify 0.1.2
ggtext 0.1.2
ggtree 3.6.2
gh 1.3.1
gitcreds 0.1.2
glue 1.6.2
googledrive 2.1.1
googlesheets4 1.1.1
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
gridtext 0.1.5
gtable 0.3.1
haven 2.5.3
highr 0.10
hms 1.1.3
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.9
httr 1.4.4
httr 1.4.7
ids 1.0.1
igraph 1.3.5
ini 0.3.1
isoband 0.2.7
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
limSolve 1.5.6
littler 0.3.17
lpSolve 5.6.18
lubridate 1.9.2
magrittr 2.0.3
maps 3.4.1
markdown 1.5
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
mnormt 2.1.1
mockr 0.2.1
modelr 0.1.11
munsell 0.5.0
mvtnorm 1.2-3
mvtnormAPI 1.0-0
nlme 3.1-162
nnet 7.3-18
numDeriv 2016.8-1.1
openssl 2.0.5
optimParallel 1.0-2
optparse 1.7.3
parallel 4.2.2
patchwork 1.1.3
phangorn 2.11.1
phytools 1.2-0
pillar 1.8.1
pillar 1.9.0
pixmap 0.4-12
pkgKitten 0.2.2
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.2
purrr 1.0.1
quadprog 1.5-8
rJava 1.0-6
ragg 1.2.5
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.3
rematch2 2.1.2
rematch 2.0.0
remotes 2.4.2
reprex 2.0.2
rex 1.2.1
rlang 1.0.6
rlang 1.1.1
rmarkdown 2.20
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rversions 2.1.2
rvest 1.0.3
sass 0.4.5
scales 1.2.1
scatterplot3d 0.3-42
segmented 1.6-2
selectr 0.4-2
seqinr 4.2-23
sessioninfo 1.2.2
shiny 1.7.4
sourcetools 0.1.7-1
sp 1.6-0
spatial 7.3-16
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.12
stringr 1.5.0
survival 3.5-3
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
textshaping 0.3.6
tibble 3.1.8
tibble 3.2.1
tictoc 1.2
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.4.5
tidyverse 2.0.0
timechange 0.2.0
tinytex 0.44
tools 4.2.2
translations 4.2.2
treedater 0.5.3
treeio 1.22.0
tzdb 0.4.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.2.2
uuid 1.1-1
vctrs 0.5.2
vctrs 0.6.3
viridis 0.6.2
viridisLite 0.4.1
vroom 1.6.3
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.37
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.9
zip 2.2.2
zlibbioc 1.44.0

PyJWT 2.6.0
DendroPy 4.6.1
Pillow 9.4.0
PyGObject 3.44.1
TREESHRINK 1.3.9
biopython 1.80
biopython 1.81
blinker 1.5
cgecore 1.5.6
cryptography 38.0.4
dbus-python 1.3.2
dill 0.3.7
distro 1.8.0
gubbins 3.3.0
httplib2 0.20.4
launchpadlib 1.11.0
lazr.restfulclient 0.14.5
lazr.uri 1.0.6
llvmlite 0.40.1
multiprocess 0.70.15
numba 0.57.1
numpy 1.24.2
numpy 1.24.4
oauthlib 3.2.2
pip 23.0.1
pyparsing 3.0.9
python-apt 2.5.3 ubuntu1
reportlab 3.6.12
scipy 1.11.2
setuptools 66.1.1
setuptools 68.1.2
six 1.16.0
tabulate 0.8.9
wadllib 1.3.6
wheel 0.38.4

bash 5.2.15