Ecosyste.ms: Docker

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shiramaty/qiime2-sratools : latest

Latest release: about 2 years ago - 11 downloads - 319 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
BH 1.78.0-0
Biobase 2.54.0
BiocGenerics 0.40.0
BiocParallel 1.28.3
Biostrings 2.62.0
DelayedArray 0.20.0
GenomeInfoDb 1.30.0
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicRanges 1.46.1
IRanges 2.28.0
MASS 7.3-58.1
Matrix 1.4-1
MatrixGenerics 1.6.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.8
Rcpp 1.0.9
RcppEigen 0.3.3.9.2
RcppParallel 5.1.5
Rhtslib 1.26.0
Rsamtools 2.10.0
S4Vectors 0.32.3
ShortRead 1.52.0
SummarizedExperiment 1.24.0
XVector 0.34.0
backports 1.4.1
base 4.1.3
bitops 1.0-7
brio 1.1.3
callr 3.7.2
cli 3.4.0
cluster 2.1.3
colorspace 2.0-3
compiler 4.1.3
crayon 1.5.1
dada2 1.22.0
datasets 4.1.3
deldir 1.0-6
desc 1.4.2
diffobj 0.3.5
digest 0.6.29
ellipsis 0.3.2
evaluate 0.16
fansi 1.0.3
farver 2.1.1
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
getopt 1.20.3
ggplot2 3.3.6
glue 1.6.2
grDevices 4.1.3
graphics 4.1.3
grid 4.1.3
gtable 0.3.1
hwriter 1.3.2.1
interp 1.1-3
isoband 0.2.5
jpeg 0.1-9
jsonlite 1.8.0
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
latticeExtra 0.6-30
lifecycle 1.0.1
magrittr 2.0.3
matrixStats 0.62.0
methods 4.1.3
mgcv 1.8-40
munsell 0.5.0
nlme 3.1-159
optparse 1.7.3
parallel 4.1.3
permute 0.9-7
pillar 1.8.1
pkgconfig 2.0.3
pkgload 1.3.0
plyr 1.8.7
png 0.1-7
praise 1.0.0
processx 3.7.0
ps 1.7.1
rematch2 2.1.2
reshape2 1.4.4
rlang 1.0.5
rprojroot 2.0.3
scales 1.2.1
snow 0.4-4
splines 4.1.3
stats4 4.1.3
stats 4.1.3
stringi 1.7.8
stringr 1.4.1
tcltk 4.1.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.4
tibble 3.1.8
tools 4.1.3
translations 4.1.3
utf8 1.2.2
utils 4.1.3
vctrs 0.4.1
vegan 2.6-2
viridisLite 0.4.1
waldo 0.4.0
withr 2.5.0
zlibbioc 1.40.0

bash 5.1.4
java 17.0.3-internal 0-adhoc..src
python 3.8.13
python 3.9.12
python 3.9.2

edirect (devel)
github.com/fatih/color v1.12.0
github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
github.com/klauspost/cpuid v1.3.1
github.com/mattn/go-colorable v0.1.8
github.com/mattn/go-isatty v0.0.12
github.com/pbnjay/memory v0.0.0-20210728143218-7b4eea64cf58
github.com/rainycape/unidecode v0.0.0-20150907023854-cb7f23ec59be
github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
golang.org/x/sys v0.0.0-20200223170610-d5e6a3e2c0ae
golang.org/x/text v0.3.7
stdlib 1.17

commons-beanutils:commons-beanutils 1.8.3
commons-collections:commons-collections 3.2.1
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
jrt-fs:jrt-fs 17.0.3-internal
net.sf.ezmorph:ezmorph 1.0.6
seppJsonMerger:seppJsonMerger *

@jupyter-widgets/jupyterlab-manager 5.0.3
debug 3.2.6
license-checker 25.0.1
nopt 4.0.1
spdx-license-ids 3.0.5
validate-npm-package-license 3.0.4

CacheControl 0.12.11
Cython 0.29.32
DendroPy 4.5.2
Jinja2 3.1.2
MarkupSafe 2.1.1
Pillow 9.2.0
PyQt5-sip 12.11.0
PyQt5 5.15.7
PySocks 1.7.1
PyYAML 6.0
Pygments 2.13.0
apipkg 2.0.0
asttokens 2.0.8
atpublic 3.0.1
attrs 22.1.0
backcall 0.2.0
backports.functools-lru-cache 1.6.4
bibtexparser 1.3.0
biom-format 2.1.12
bokeh 2.4.3
brotlipy 0.7.0
bytecode 0.13.0.dev0
certifi 2022.6.15
certifi 2022.9.24
cffi 1.15.1
charset-normalizer 2.0.4
charset-normalizer 2.1.1
click 8.1.3
colorama 0.4.5
conda-package-handling 1.8.1
conda 22.11.1
cryptography 37.0.1
cryptography 37.0.4
cutadapt 4.1
cycler 0.11.0
cytoolz 0.11.0
deblur 1.1.1
debugpy 1.6.3
decorator 4.4.2
dill 0.3.5.1
dnaio 0.9.1
emperor 1.0.3
entrypoints 0.4
executing 1.0.0
fastcluster 1.2.6
fastjsonschema 2.16.1
flufl.lock 7.1
fonttools 4.37.1
future 0.18.2
gneiss 0.4.6
h5py 2.10.0
hdmedians 0.14.2
idna 3.3
ijson 3.1.3
importlib-metadata 4.11.4
importlib-resources 5.9.0
iniconfig 1.1.1
iow 1.0.5
ipykernel 6.15.2
ipython 8.5.0
ipywidgets 8.0.2
isal 1.0.1
jedi 0.18.1
joblib 1.1.0
jsonschema 4.15.0
jupyter_client 7.3.5
jupyter_core 4.11.1
jupyterlab-widgets 3.0.3
kiwisolver 1.4.4
llvmlite 0.36.0
lockfile 0.12.2
lxml 4.9.1
lz4 4.0.0
matplotlib-inline 0.1.6
matplotlib 3.5.3
mercurial 5.6.1
msgpack 1.0.4
munkres 1.1.4
mypy 0.902
natsort 8.2.0
nbformat 5.4.0
nest-asyncio 1.5.5
networkx 2.8.6
nose 1.3.7
numba 0.53.1
numpy 1.23.2
packaging 21.3
pandas 1.4.4
parso 0.8.3
patsy 0.5.2
pexpect 4.8.0
pickleshare 0.7.5
pip 22.1.2
pip 22.2.2
pkgutil_resolve_name 1.3.10
pluggy 1.0.0
ply 3.11
prompt-toolkit 3.0.31
psutil 5.9.2
ptyprocess 0.7.0
pure-eval 0.2.2
py 1.11.0
pyOpenSSL 22.0.0
pycosat 0.6.3
pycparser 2.21
pynndescent 0.5.7
pyparsing 3.0.9
pyrsistent 0.18.1
pytest 7.1.3
python-dateutil 2.8.2
pytz 2022.2.1
pyzmq 23.2.1
q2-alignment 2022.8.0
q2-composition 2022.8.0
q2-cutadapt 2022.8.0
q2-dada2 2022.8.0
q2-deblur 2022.8.0
q2-demux 2022.8.0
q2-diversity-lib 2022.8.0
q2-diversity 2022.8.0
q2-emperor 2022.8.0
q2-feature-classifier 2022.8.0
q2-feature-table 2022.8.1
q2-fragment-insertion 2022.8.0
q2-gneiss 2022.8.0
q2-longitudinal 2022.8.0
q2-metadata 2022.8.0
q2-mystery-stew 2022.8.0
q2-phylogeny 2022.8.0
q2-quality-control 2022.8.0
q2-quality-filter 2022.8.0
q2-sample-classifier 2022.8.0
q2-taxa 2022.8.0
q2-types 2022.8.0
q2-vsearch 2022.8.0
q2cli 2022.8.0
q2galaxy 2022.8.1
q2templates 2022.8.0
qiime2 2022.8.3
requests 2.28.1
ruamel-yaml-conda 0.15.100
ruamel.yaml.clib 0.2.6
ruamel.yaml 0.17.21
scikit-bio 0.5.7
scikit-learn 0.24.1
scipy 1.8.1
seaborn 0.12.0
sepp 4.3.10
setuptools 63.4.1
setuptools 65.3.0
sip 6.6.2
six 1.16.0
stack-data 0.5.0
statsmodels 0.13.2
threadpoolctl 3.1.0
toml 0.10.2
tomli 2.0.1
toolz 0.11.2
tornado 6.2
tqdm 4.64.0
tqdm 4.64.1
traitlets 5.3.0
typing_extensions 4.3.0
tzlocal 2.1
umap-learn 0.5.3
unicodedata2 14.0.0
unifrac 1.0.0
urllib3 1.26.11
wcwidth 0.2.5
wheel 0.37.1
widgetsnbextension 4.0.3
xopen 1.6.0
zipp 3.8.1