Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

dolphinnext/ont_variant_calling : 1.0

Latest release: almost 2 years ago - 80 downloads - 494 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
BH 1.78.0-0
Biobase 2.58.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocParallel 1.32.0
Biostrings 2.66.0
DelayedArray 0.24.0
GenomeInfoDb 1.34.1
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicRanges 1.50.0
IRanges 2.32.0
Matrix 1.5-3
MatrixGenerics 1.10.0
NOISeq 2.42.0
RCurl 1.98-1.9
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.0
SummarizedExperiment 1.28.0
XML 3.99-0.13
XVector 0.38.0
base 4.2.2
bitops 1.0-7
codetools 0.2-18
compiler 4.2.2
cpp11 0.4.3
crayon 1.5.2
datasets 4.2.2
formatR 1.13
futile.logger 1.4.3
futile.options 1.0.1
getopt 1.20.3
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
lambda.r 1.2.4
lattice 0.20-45
matrixStats 0.63.0
methods 4.2.2
optparse 1.7.3
parallel 4.2.2
restfulr 0.0.15
rjson 0.2.21
rtracklayer 1.58.0
snow 0.4-4
splines 4.2.2
stats4 4.2.2
stats 4.2.2
tcltk 4.2.2
tools 4.2.2
translations 4.2.2
utils 4.2.2
yaml 2.3.6
zlibbioc 1.44.0

ubuntu/adduser 3.118ubuntu5
ubuntu/apt 2.4.8
ubuntu/base-files 12ubuntu4.2
ubuntu/base-passwd 3.5.52build1
ubuntu/bash 5.1-6ubuntu1
ubuntu/binutils-common 2.38-4ubuntu2.1
ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.1
ubuntu/binutils 2.38-4ubuntu2.1
ubuntu/bsdutils 1:2.37.2-4ubuntu3
ubuntu/bzip2 1.0.8-5build1
ubuntu/ca-certificates 20211016ubuntu0.22.04.1
ubuntu/coreutils 8.32-4.1ubuntu1
ubuntu/cpp-11 11.3.0-1ubuntu1~22.04
ubuntu/cpp 4:11.2.0-1ubuntu1
ubuntu/curl 7.81.0-1ubuntu1.6
ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
ubuntu/debconf 1.5.79ubuntu1
ubuntu/debianutils 5.5-1ubuntu2
ubuntu/diffutils 1:3.8-0ubuntu2
ubuntu/dpkg 1.21.1ubuntu2.1
ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
ubuntu/findutils 4.8.0-1ubuntu3
ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
ubuntu/fonts-dejavu-core 2.37-2build1
ubuntu/g -11 11.3.0-1ubuntu1~22.04
ubuntu/g 4:11.2.0-1ubuntu1
ubuntu/gcc-11-base 11.3.0-1ubuntu1~22.04
ubuntu/gcc-11 11.3.0-1ubuntu1~22.04
ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
ubuntu/gcc 4:11.2.0-1ubuntu1
ubuntu/git-man 1:2.34.1-1ubuntu1.5
ubuntu/git 1:2.34.1-1ubuntu1.5
ubuntu/gpgv 2.2.27-3ubuntu2.1
ubuntu/grep 3.7-1build1
ubuntu/gzip 1.10-4ubuntu4.1
ubuntu/hostname 3.23ubuntu2
ubuntu/init-system-helpers 1.62
ubuntu/less 590-1build1
ubuntu/libacl1 2.3.1-1
ubuntu/libapt-pkg6.0 2.4.8
ubuntu/libasan6 11.3.0-1ubuntu1~22.04
ubuntu/libatomic1 12.1.0-2ubuntu1~22.04
ubuntu/libattr1 1:2.5.1-1build1
ubuntu/libaudit-common 1:3.0.7-1build1
ubuntu/libaudit1 1:3.0.7-1build1
ubuntu/libbinutils 2.38-4ubuntu2.1
ubuntu/libblkid1 2.37.2-4ubuntu3
ubuntu/libbrotli1 1.0.9-2build6
ubuntu/libbsd0 0.11.5-1
ubuntu/libbz2-1.0 1.0.8-5build1
ubuntu/libc-bin 2.35-0ubuntu3.1
ubuntu/libc-dev-bin 2.35-0ubuntu3.1
ubuntu/libc-devtools 2.35-0ubuntu3.1
ubuntu/libc6-dev 2.35-0ubuntu3.1
ubuntu/libc6 2.35-0ubuntu3.1
ubuntu/libcap-ng0 0.7.9-2.2build3
ubuntu/libcap2 1:2.44-1build3
ubuntu/libcbor0.8 0.8.0-2ubuntu1
ubuntu/libcc1-0 12.1.0-2ubuntu1~22.04
ubuntu/libcom-err2 1.46.5-2ubuntu1.1
ubuntu/libcrypt-dev 1:4.4.27-1
ubuntu/libcrypt1 1:4.4.27-1
ubuntu/libctf-nobfd0 2.38-4ubuntu2.1
ubuntu/libctf0 2.38-4ubuntu2.1
ubuntu/libcurl3-gnutls 7.81.0-1ubuntu1.6
ubuntu/libcurl4 7.81.0-1ubuntu1.6
ubuntu/libdb5.3 5.3.28 dfsg1-0.8ubuntu3
ubuntu/libdebconfclient0 0.261ubuntu1
ubuntu/libdeflate0 1.10-2
ubuntu/libedit2 3.1-20210910-1build1
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.4.7-1ubuntu0.2
ubuntu/libext2fs2 1.46.5-2ubuntu1.1
ubuntu/libffi8 3.4.2-4
ubuntu/libfido2-1 1.10.0-1
ubuntu/libfontconfig1 2.13.1-4.2ubuntu5
ubuntu/libfreetype6 2.11.1 dfsg-1ubuntu0.1
ubuntu/libgcc-11-dev 11.3.0-1ubuntu1~22.04
ubuntu/libgcc-s1 12.1.0-2ubuntu1~22.04
ubuntu/libgcrypt20 1.9.4-3ubuntu3
ubuntu/libgd3 2.3.0-2ubuntu2
ubuntu/libgdbm-compat4 1.23-1
ubuntu/libgdbm6 1.23-1
ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
ubuntu/libgnutls30 3.7.3-4ubuntu1.1
ubuntu/libgomp1 12.1.0-2ubuntu1~22.04
ubuntu/libgpg-error0 1.43-3
ubuntu/libgssapi-krb5-2 1.19.2-2
ubuntu/libhogweed6 3.7.3-1build2
ubuntu/libidn2-0 2.3.2-2build1
ubuntu/libisl23 0.24-2build1
ubuntu/libitm1 12.1.0-2ubuntu1~22.04
ubuntu/libjbig0 2.1-3.1ubuntu0.22.04.1
ubuntu/libjpeg-turbo8 2.1.2-0ubuntu1
ubuntu/libjpeg8 8c-2ubuntu10
ubuntu/libk5crypto3 1.19.2-2
ubuntu/libkeyutils1 1.6.1-2ubuntu3
ubuntu/libkrb5-3 1.19.2-2
ubuntu/libkrb5support0 1.19.2-2
ubuntu/libldap-2.5-0 2.5.13 dfsg-0ubuntu0.22.04.1
ubuntu/libldap-common 2.5.13 dfsg-0ubuntu0.22.04.1
ubuntu/liblsan0 12.1.0-2ubuntu1~22.04
ubuntu/liblz4-1 1.9.3-2build2
ubuntu/liblzma5 5.2.5-2ubuntu1
ubuntu/libmd0 1.0.4-1build1
ubuntu/libmount1 2.37.2-4ubuntu3
ubuntu/libmpc3 1.2.1-2build1
ubuntu/libmpfr6 4.1.0-3build3
ubuntu/libncurses6 6.3-2
ubuntu/libncursesw6 6.3-2
ubuntu/libnettle8 3.7.3-1build2
ubuntu/libnghttp2-14 1.43.0-1build3
ubuntu/libnsl-dev 1.3.0-2build2
ubuntu/libnsl2 1.3.0-2build2
ubuntu/libp11-kit0 0.24.0-6build1
ubuntu/libpam-modules-bin 1.4.0-11ubuntu2
ubuntu/libpam-modules 1.4.0-11ubuntu2
ubuntu/libpam-runtime 1.4.0-11ubuntu2
ubuntu/libpam0g 1.4.0-11ubuntu2
ubuntu/libpcre2-8-0 10.39-3ubuntu0.1
ubuntu/libpcre3 2:8.39-13ubuntu0.22.04.1
ubuntu/libperl5.34 5.34.0-3ubuntu1.1
ubuntu/libpng16-16 1.6.37-3build5
ubuntu/libprocps8 2:3.3.17-6ubuntu2
ubuntu/libpsl5 0.21.0-1.2build2
ubuntu/libquadmath0 12.1.0-2ubuntu1~22.04
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build4
ubuntu/libsasl2-2 2.1.27 dfsg2-3ubuntu1
ubuntu/libsasl2-modules-db 2.1.27 dfsg2-3ubuntu1
ubuntu/libsasl2-modules 2.1.27 dfsg2-3ubuntu1
ubuntu/libseccomp2 2.5.3-2ubuntu2
ubuntu/libselinux1 3.3-1build2
ubuntu/libsemanage-common 3.3-1build2
ubuntu/libsemanage2 3.3-1build2
ubuntu/libsepol2 3.3-1build1
ubuntu/libsmartcols1 2.37.2-4ubuntu3
ubuntu/libss2 1.46.5-2ubuntu1.1
ubuntu/libssh-4 0.9.6-2build1
ubuntu/libssl3 3.0.2-0ubuntu1.7
ubuntu/libstdc -11-dev 11.3.0-1ubuntu1~22.04
ubuntu/libstdc 6 12.1.0-2ubuntu1~22.04
ubuntu/libsystemd0 249.11-0ubuntu3.6
ubuntu/libtasn1-6 4.18.0-4build1
ubuntu/libtbb-dev 2021.5.0-7ubuntu2
ubuntu/libtbb12 2021.5.0-7ubuntu2
ubuntu/libtbbmalloc2 2021.5.0-7ubuntu2
ubuntu/libtiff5 4.3.0-6ubuntu0.3
ubuntu/libtinfo6 6.3-2
ubuntu/libtirpc-common 1.3.2-2ubuntu0.1
ubuntu/libtirpc-dev 1.3.2-2ubuntu0.1
ubuntu/libtirpc3 1.3.2-2ubuntu0.1
ubuntu/libtsan0 11.3.0-1ubuntu1~22.04
ubuntu/libubsan1 12.1.0-2ubuntu1~22.04
ubuntu/libudev1 249.11-0ubuntu3.6
ubuntu/libunistring2 1.0-1
ubuntu/libuuid1 2.37.2-4ubuntu3
ubuntu/libwebp7 1.2.2-2
ubuntu/libx11-6 2:1.7.5-1
ubuntu/libx11-data 2:1.7.5-1
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxcb1 1.14-3ubuntu3
ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
ubuntu/libxext6 2:1.3.4-1build1
ubuntu/libxmuu1 2:1.1.3-3
ubuntu/libxpm4 1:3.5.12-1build2
ubuntu/libxxhash0 0.8.1-1
ubuntu/libzstd1 1.4.8 dfsg-3build1
ubuntu/linux-libc-dev 5.15.0-56.62
ubuntu/login 1:4.8.1-2ubuntu2.1
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/manpages-dev 5.10-1ubuntu1
ubuntu/manpages 5.10-1ubuntu1
ubuntu/mawk 1.3.4.20200120-3
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/ncurses-base 6.3-2
ubuntu/ncurses-bin 6.3-2
ubuntu/netbase 6.3
ubuntu/openssh-client 1:8.9p1-3
ubuntu/openssl 3.0.2-0ubuntu1.7
ubuntu/passwd 1:4.8.1-2ubuntu2.1
ubuntu/patch 2.7.6-7build2
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/publicsuffix 20211207.1025-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1build3
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/xauth 1:1.1-1build2
ubuntu/zip 3.0-12build2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16
java 17.0.3-internal 0-adhoc..src
python 3.7.0
python 3.7.3
python 3.8.15

cisd-jhdf5:cisd-jhdf5 *
com.lowagie.tools.ToolboxAvailable:itext 2.1.6
commons-cli:commons-cli 1.2
commons-io:commons-io 1.4
commons-lang:commons-lang 2.4
commons-logging:commons-logging 1.1.1
ejml:ejml 0.24
javafx:javafx 2.2
jbzip2:jbzip2 0.9
jcommon:jcommon 1.0.15
jfreechart:jfreechart 1.0.12
jrt-fs:jrt-fs 17.0.3-internal
junit:junit 4.4
miglayout:miglayout 3.7.4
org.abego.treelayout:org.abego.treelayout.core 1.0.3
org.antlr:ST4 4.3.1
org.antlr:antlr-runtime 3.5.2
org.antlr:antlr4-runtime 4.9.3
org.antlr:antlr4 4.9.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-math3 3.6.1
org.apache.commons:commons-math 2.0
org.apache.geronimo.specs:geronimo-activation_1.1_spec 1.0.2
org.apache.geronimo.specs:geronimo-stax-api_1.0_spec 1.0.1
org.apache.servicemix.bundles:org.apache.servicemix.bundles.jaxb-impl 2.1.6_1
org.apache.servicemix.specs:org.apache.servicemix.specs.jaxb-api-2.1 1.2.0
org.apache.servicemix.specs:org.apache.servicemix.specs.locator 1.2.0
org.apache.servicemix.specs:org.apache.servicemix.specs.stax-api-1.0 1.2.0
org.apache.xmlcommons.Version:xml-apis 1.0.b2
org.bioinfo.ngs:qualimap 2.2.2-dev
org.bioinfo:bioinfo-chart 0.3.0
org.bioinfo:bioinfo-commons 0.10.1
org.bioinfo:bioinfo-data 0.6.0
org.bioinfo:bioinfo-formats 0.2.0
org.bioinfo:bioinfo-graphics 0.4.0
org.bioinfo:bioinfo-math 0.3.0
org.bioinfo:bioinfo-ngs 0.1.0
org.bioinfo:bioinfo-report 0.1.0
org.bioinfo:bioinfo-tool 0.9.0
org.biopax.paxtools.PaxtoolsMain:paxtools 1.0b1
org.biopax.paxtools:biopax-converter 2.0-SNAPSHOT
org.biopax.paxtools:pathwaycommons-client 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-core 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-jena-io 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-main 2.0-SNAPSHOT
org.biopax.paxtools:paxtools-simple-io 2.0-SNAPSHOT
org.biopax.paxtools:psimi-converter 2.0-SNAPSHOT
org.biopax.paxtools:sif-converter 2.0-SNAPSHOT
org.biopax.paxtools:validator-client 2.0-SNAPSHOT
org.dom4j:dom4j 1.6.1
org.glassfish:javax.json 1.0.4
org.jdom:jdom 1.1
org.sharegov:mjson 1.4.1
org.snpeff:SnpEff 5.1
org.snpsift.SnpSift:SnpSift *
org.xerial.thirdparty:nestedvm 1.0
org.xerial:sqlite-jdbc 3.6.16
org.xml.sax:sax 2.0.1
picard:picard 1.70
psidev.psi.mi:psi25-xml 1.7.7
psidev.psi.tools:xxindex 0.6
sam:sam 1.103
samtools:samtools 1.70

jupyterlab-plotly 5.11.0

Deprecated 1.2.13
HeapDict 1.0.1
HiCMatrix 16
Jinja2 3.1.2
Keras-Preprocessing 1.1.2
Markdown 3.4.1
MarkupSafe 2.1.1
NanoPlot 1.40.2
Pillow 9.2.0
PyJWT 2.6.0
PySocks 1.7.1
PyVCF3 1.0.3
PyYAML 6.0
Pygments 2.13.0
Werkzeug 2.2.2
absl-py 1.3.0
aiohttp 3.8.3
aiosignal 1.3.1
argcomplete 2.0.0
argh 0.26.2
asciitree 0.3.3
asn1crypto 1.5.1
astunparse 1.6.3
async-timeout 4.0.2
attrs 22.2.0
biopython 1.80
blinker 1.5
bokeh 2.4.3
brotlipy 0.7.0
bx-python 0.9.0
cached-property 1.5.2
cachetools 4.2.4
certifi 2022.12.7
cffi 1.15.1
chardet 5.1.0
charset-normalizer 2.0.4
click 8.1.3
cloudpickle 2.2.0
colorama 0.4.6
coloredlogs 15.0.1
colormath 3.0.0
commonmark 0.9.1
conda-package-handling 2.0.2
conda 22.11.1
conda_package_streaming 0.7.0
cooler 0.8.11
cryptography 38.0.4
cycler 0.11.0
cytoolz 0.12.0
dask 2022.12.1
dataclasses 0.8
deepTools 3.5.1
deeptoolsintervals 0.1.9
dill 0.3.6
distributed 2022.12.1
edlib 1.3.9
flask 0.10.1
flatbuffers 2.0
fonttools 4.38.0
frozenlist 1.3.3
fsspec 2022.11.0
future 0.18.2
gast 0.4.0
gffutils 0.11.1
google-auth-oauthlib 0.4.6
google-auth 1.35.0
google-pasta 0.2.0
grpcio 1.43.0
h5py 3.7.0
humanfriendly 10.0
idna 3.4
importlib-metadata 1.5.0
importlib-metadata 5.2.0
intervaltree 3.0.2
kaleido 0.2.1
keras 2.7.0
kiwisolver 1.4.4
libmambapy 1.1.0
locket 1.0.0
lz4 4.2.0
lzstring 1.0.4
mamba 1.1.0
mappy 2.24
matplotlib 3.5.1
medaka 1.7.2
msgpack 1.0.4
multidict 6.0.4
multiprocess 0.70.14
multiqc 1.13
munkres 1.1.4
mypy 0.931
nanoget 1.18.1
nanomath 1.2.1
networkx 2.8.8
numexpr 2.8.3
numpy 1.19.5
oauthlib 3.2.2
ont-fast5-api 4.1.1
opt-einsum 3.3.0
packaging 22.0
pandas 1.4.4
parasail 1.3.3
partd 1.3.0
pip 22.3.1
plotly 5.11.0
pluggy 1.0.0
progressbar33 2.4
protobuf 3.19.4
psutil 5.9.4
py2bit 0.3.0
pyBigWig 0.3.18
pyGenomeTracks 3.7
pyOpenSSL 22.0.0
pyarrow 8.0.0
pyasn1-modules 0.2.7
pyasn1 0.4.8
pybedtools 0.9.0
pycosat 0.6.4
pycparser 2.21
pydata-sphinx-theme 0.9.0
pyfaidx 0.7.1
pypairix 0.3.7
pyparsing 3.0.9
pysam 0.20.0
pyspoa 0.0.3
python-dateutil 2.8.2
python-lzo 1.14
pytz 2022.7
pyu2f 0.1.5
requests-oauthlib 1.3.1
requests 2.28.1
rich-click 1.6.0
rich 12.6.0
rsa 4.9
ruamel-yaml-conda 0.15.80
ruamel.yaml.clib 0.2.7
ruamel.yaml 0.17.21
scipy 1.9.1
setuptools 65.6.3
simplejson 3.18.0
six 1.16.0
sortedcontainers 2.4.0
spectra 0.0.11
tables 3.7.0
tblib 1.7.0
tenacity 8.1.0
tensorboard-data-server 0.6.1
tensorboard-plugin-wit 1.8.1
tensorboard 2.6.0
tensorflow-estimator 2.7.0
tensorflow 2.7.1
termcolor 2.1.1
toml 0.10.2
toolz 0.12.0
tornado 6.2
tqdm 4.64.1
typing_extensions 4.4.0
unicodedata2 15.0.0
urllib3 1.26.13
wheel 0.37.1
wrapt 1.14.1
xmltodict 0.13.0
yarl 1.8.2
yq 3.1.0
zict 2.2.0
zipp 3.11.0
zstandard 0.19.0