Ecosyste.ms: Docker

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curiobioinformatics/curio-seeker-pipeline : 4796bb6dd0fbdf876ad885d92c65f2220316ac38

Ubuntu 20.04.6 LTS

Latest release: about 1 year ago - 19,219 downloads - 1,523 dependencies

JSON

Dependencies

BH 1.81.0-1
CompQuadForm 1.4.3
DBI 1.1.3
FNN 1.1.3.2
IRdisplay 1.1
IRkernel 1.3.2
KernSmooth 2.23-22
MASS 7.3-60
Matrix 1.5-3
MatrixModels 0.5-2
ModelMetrics 1.2.2.2
R.methodsS3 1.8.2
R.oo 1.25.0
svglite 2.1.1
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
ROCR 1.0-11
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.6.3.0
RcppEigen 0.3.3.9.3
RcppGSL 0.3.13
RcppGSLExample 0.0.3
RcppParallel 5.1.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rfast2 0.1.5.1
Rfast 2.0.8
Rtsne 0.16
SQUAREM 2021.1
Seurat 4.1.1
SeuratObject 4.1.3
SparseM 1.81
TTR 0.24.3
abind 1.4-5
arrow 12.0.1
askpass 1.2.0
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.3
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom 1.0.5
bslib 0.5.1
bsplus 0.1.4
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
car 3.1-2
carData 3.0-5
caret 6.0-94
cellranger 1.1.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
clock 0.7.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
commonmark 1.9.0
compiler 4.2.3
conquer 1.3.3
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.6
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
crul 1.4.0
curl 5.0.2
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.3
deldir 1.0-9
desc 1.4.2
devtools 2.4.5
diagram 1.6.5
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.33
doParallel 1.0.17
dotCall64 1.0-2
downlit 0.4.3
downloadthis 0.3.2
dplyr 1.1.3
dqrng 0.3.1
dtplyr 1.3.1
e1071 1.7-13
ellipsis 0.3.2
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fields 15.2
fitdistrplus 1.1-11
fontawesome 0.5.2
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
fs 1.6.3
future.apply 1.11.0
future 1.33.0
gargle 1.5.2
generics 0.1.3
gert 1.9.3
ggplot2 3.4.3
ggprism 1.0.4
ggpubr 0.4.0
ggrepel 0.9.3
ggridges 0.5.4
ggsci 3.0.0
ggsignif 0.6.4
gh 1.4.0
gistr 0.9.0
gitcreds 0.1.2
glmnet 4.1-8
globals 0.16.2
glue 1.6.2
goftest 1.2-3
googledrive 2.1.1
googlesheets4 1.1.1
gower 1.0.1
gplots 3.1.3
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gridExtra 2.3
gtable 0.3.4
gtools 3.9.4
hardhat 1.3.0
haven 2.5.3
here 1.0.1
hexbin 1.28.3
highr 0.10
hms 1.1.3
htmltools 0.5.6
htmlwidgets 1.6.2
httpcode 0.3.0
httpuv 1.6.11
httr2 0.2.3
httr 1.4.7
ica 1.0-3
ids 1.0.1
igraph 1.5.1
ini 0.3.1
ipred 0.9-14
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.7
kableExtra 1.3.4
knitr 1.43
labeling 0.4.3
later 1.3.1
lattice 0.21-8
lava 1.7.2.1
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
linkXTS 1.0
listenv 0.9.0
lme4 1.1-34
lmtest 0.9-40
lobstr 1.1.2
locfdr 1.1-8
lsei 1.3-0
lubridate 1.9.2
magrittr 2.0.3
mapproj 1.2.11
maps 3.4.1
maptools 1.1-8
mathjaxr 1.6-0
matrixStats 1.0.0
memoise 2.0.1
metadat 1.2-0
metafor 4.2-0
methods 4.2.3
mgcv 1.9-0
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
modelr 0.1.11
munsell 0.5.0
nlme 3.1-163
nloptr 2.0.3
nnet 7.3-19
npsurv 0.5-0
numDeriv 2016.8-1.1
openssl 2.0.6
openxlsx 4.2.5.2
pROC 1.18.4
pals 1.8
parallel 4.2.3
parallelly 1.36.0
patchwork 1.1.3
pbapply 1.7-2
pbdZMQ 0.3-10
pbkrtest 0.5.2
pillar 1.9.0
pkgbuild 1.4.2
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2.1
plotly 4.10.2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.2
prodlim 2023.08.28
profvis 0.3.8
progress 1.2.2
progressr 0.14.0
promises 1.2.1
proxy 0.4-27
pryr 0.1.6
ps 1.7.5
purrr 1.0.1
quadprog 1.5-8
quantmod 0.4.25
quantreg 5.97
ragg 1.2.5
randomForest 4.7-1.1
rappdirs 0.3.3
rbokeh 0.5.2
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.3
recipes 1.0.8
rematch2 2.1.2
rematch 2.0.0
remotes 2.4.2.1
repr 1.1.6
reprex 2.0.2
reshape2 1.4.4
reticulate 1.31
rgeos 0.6-4
rio 0.5.30
rlang 1.1.1
rmarkdown 2.24
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstatix 0.7.2
rstudioapi 0.15.0
rversions 2.1.2
rvest 1.0.3
sass 0.4.7
scales 1.2.1
scattermore 1.2
sctransform 0.3.5
selectr 0.4-2
sessioninfo 1.2.2
shape 1.4.6
shiny 1.7.5
sitmo 2.0.2
sourcetools 0.1.7-1
sp 2.0-0
spacexr 2.2.1
spam 2.9-1
spatial 7.3-17
spatstat.core 2.4-4
spatstat.data 3.0-1
spatstat.geom 3.2-5
spatstat.random 3.1-5
spatstat.sparse 3.0-2
spatstat.utils 3.0-3
splines 4.2.3
statmod 1.5.0
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-7
sys 3.4.2
systemfonts 1.0.4
tcltk 4.2.3
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.10
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 1.3.2
timeDate 4022.108
timechange 0.2.0
tinytex 0.46
tools 4.2.3
translations 4.2.3
triebeard 0.4.1
tzdb 0.4.0
urlchecker 1.0.1
urltools 1.7.3
usethis 2.2.2
utf8 1.2.3
utils 4.2.3
uuid 1.1-1
uwot 0.1.16
vctrs 0.6.3
viridis 0.6.4
viridisLite 0.4.2
vroom 1.6.3
waldo 0.5.1
webshot 0.5.5
whisker 0.4.1
withr 2.5.0
writexl 1.4.2
xfun 0.40
xml2 1.3.5
xopen 1.0.0
xtable 1.8-4
xts 0.13.1
yaml 2.3.7
zip 2.3.0
zoo 1.8-12

ubuntu/adduser 3.118ubuntu2
ubuntu/apt 2.0.9
ubuntu/base-files 11ubuntu5.7
ubuntu/base-passwd 3.5.47
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates 20230311ubuntu0.20.04.1
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/dash 0.5.10.2-6
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/diffutils 1:3.7-3
ubuntu/dpkg 1.19.7ubuntu3.2
ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
ubuntu/git-man 1:2.25.1-1ubuntu3.11
ubuntu/git 1:2.25.1-1ubuntu3.11
ubuntu/gpgv 2.2.19-3ubuntu2.2
ubuntu/grep 3.4-1
ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/init-system-helpers 1.57
ubuntu/libacl1 2.2.53-6
ubuntu/libapt-pkg6.0 2.0.9
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libblkid1 2.34-0.1ubuntu9.3
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libc-bin 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcom-err2 1.45.5-2ubuntu1.1
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.18
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/liberror-perl 0.17029-1
ubuntu/libexpat1 2.2.9-1ubuntu0.6
ubuntu/libext2fs2 1.45.5-2ubuntu1.1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi7 3.3-4
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgnutls30 3.6.13-2ubuntu1.8
ubuntu/libgpg-error0 1.37-1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.3
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libidn2-0 2.2.0-2
ubuntu/libk5crypto3 1.17-6ubuntu4.3
ubuntu/libkeyutils1 1.6-6ubuntu1.1
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libkrb5-3 1.17-6ubuntu4.3
ubuntu/libkrb5support0 1.17-6ubuntu4.3
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/libmount1 2.34-0.1ubuntu9.3
ubuntu/libncurses6 6.2-0ubuntu2
ubuntu/libncursesw6 6.2-0ubuntu2
ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libnghttp2-14 1.40.0-1ubuntu0.1
ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.6
ubuntu/libpam-modules 1.3.1-5ubuntu4.6
ubuntu/libpam-runtime 1.3.1-5ubuntu4.6
ubuntu/libpam0g 1.3.1-5ubuntu4.6
ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
ubuntu/libpcre3 2:8.39-12ubuntu0.1
ubuntu/libperl5.30 5.30.0-9ubuntu0.4
ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.3
ubuntu/libssl1.1 1.1.1f-1ubuntu2.19
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsystemd0 245.4-4ubuntu3.21
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libudev1 245.4-4ubuntu3.21
ubuntu/libunistring2 0.9.10-2
ubuntu/libuuid1 2.34-0.1ubuntu9.3
ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.4
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/openssl 1.1.1f-1ubuntu2.19
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
ubuntu/perl-base 5.30.0-9ubuntu0.4
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.4
ubuntu/perl 5.30.0-9ubuntu0.4
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/sed 4.7-1
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
ubuntu/tini 0.18.0-1
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/wget 1.20.3-1ubuntu2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5

org.iq80.leveldb:leveldb 0.12
org.jsoup:jsoup 1.15.4
ch.qos.logback:logback-classic 1.2.11
ch.qos.logback:logback-core 1.2.11
com.beust:jcommander 1.35
com.esotericsoftware.kryo:kryo 2.24.0
com.esotericsoftware.reflectasm:reflectasm 1.09
com.github.zafarkhaja:java-semver 0.9.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.10.1
com.google.errorprone:error_prone_annotations 2.11.0
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 31.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.j2objc:j2objc-annotations 1.3
com.googlecode.javaewah:JavaEWAH 1.1.13
com.sun:activation 1.1.1
commons-codec:commons-codec 1.15
commons-io:commons-io 2.11.0
commons-lang:commons-lang 2.6
dev.failsafe:failsafe 3.1.0
gpars:gpars 1.2.1
grengine:grengine 3.0.0
javax.mail:mail 1.4.7
jline:jline 2.9
jrt-fs:jrt-fs 20-internal
jsr166y:jsr166y 1.7.0
nextflow:nextflow 23.04.1
nextflow:nextflow 23.04.1-one
nf-commons:nf-commons 23.04.1
nf-httpfs:nf-httpfs 23.04.1
org.apache:ivy 2.5.1
org.checkerframework.checker.qual:checker-qual 3.12.0
org.codehaus.groovy.json:groovy-json 3.0.16
org.codehaus.groovy.nio:groovy-nio 3.0.16
org.codehaus.groovy.templates:groovy-templates 3.0.16
org.codehaus.groovy.xml:groovy-xml 3.0.16
org.codehaus.groovy:groovy 3.0.16
org.eclipse.jgit:org.eclipse.jgit 6.2.0.202206071550-r
org.iq80.leveldb:leveldb-api 0.12
org.multiverse:multiverse-core 0.7.0
org.objenesis:objenesis 2.1
org.pf4j:pf4j-update 2.3.0
org.pf4j:pf4j 3.4.1
org.slf4j:jcl-over-slf4j 1.7.36
org.slf4j:jul-to-slf4j 1.7.36
org.slf4j:log4j-over-slf4j 1.7.36
org.slf4j:slf4j-api 1.7.36
org.yaml:snakeyaml 2.0

ansi-regex 5.0.1
@arcanis/slice-ansi 1.1.1
@babel/runtime 7.21.0
@chevrotain/types 9.1.0
@chevrotain/utils 9.1.0
@codemirror/autocomplete 6.5.1
@codemirror/commands 6.2.3
@codemirror/lang-cpp 6.0.2
@codemirror/lang-css 6.1.1
@codemirror/lang-html 6.4.3
@codemirror/lang-java 6.0.1
@codemirror/lang-javascript 6.1.7
@codemirror/lang-json 6.0.1
@codemirror/lang-markdown 6.1.1
@codemirror/lang-php 6.0.1
@codemirror/lang-python 6.1.3
@codemirror/lang-rust 6.0.1
@codemirror/lang-sql 6.4.1
@codemirror/lang-wast 6.0.1
@codemirror/lang-xml 6.0.2
@codemirror/language 6.8.0
@codemirror/legacy-modes 6.3.2
@codemirror/lint 6.2.0
@codemirror/search 6.3.0
@codemirror/state 6.2.0
@codemirror/view 6.9.6
@discoveryjs/json-ext 0.5.7
@fortawesome/fontawesome-free 5.15.4
@gar/promisify 1.1.3
@jridgewell/gen-mapping 0.3.2
@jridgewell/resolve-uri 3.1.0
@jridgewell/set-array 1.1.2
@jridgewell/source-map 0.3.2
@jridgewell/sourcemap-codec 1.4.14
@jridgewell/trace-mapping 0.3.17
@jupyter-notebook/lab-extension 7.0.3
@jupyter-widgets/jupyterlab-manager 5.0.8
@jupyter/ydoc 1.0.2
@jupyterlab/application-extension 4.0.5
@jupyterlab/application-top 0.0.0-use.local
@jupyterlab/application-top 4.0.5
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@jupyterlab/attachments 4.0.5
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@jupyterlab/completer 4.0.5
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@jupyterlab/console 4.0.5
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@types/keyv 3.1.4
ajv 8.12.0
@jupyterlab/csvviewer-extension 4.0.5
@jupyterlab/csvviewer 4.0.5
@jupyterlab/debugger-extension 4.0.5
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@jupyterlab/docmanager-extension 4.0.5
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@jupyterlab/galata-extension 5.0.4
@jupyterlab/help-extension 4.0.5
@jupyterlab/htmlviewer-extension 4.0.5
@jupyterlab/htmlviewer 4.0.5
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safe-buffer 5.2.1
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webpack-bundle-analyzer 4.8.0
webpack-cli 5.0.1
webpack-merge 5.8.0
webpack-sources 1.4.3
webpack-sources 3.2.3
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which 2.0.2
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yup 0.32.11

bash 5.0.17
java 20-internal-adhoc..src
python 3.10.10
python 3.10.12

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Brotli 1.1.0
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Jinja2 3.1.2
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future 0.18.3
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pip 23.0.1
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unicodedata2 15.0.0
uri-template 1.3.0
urllib3 1.26.15
urllib3 2.0.4
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wheel 0.40.0
wheel 0.41.2
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