nfcore/ampliseq : dev
A Docker image for nf-core/ampliseq.
Latest release: over 5 years ago - 10,953 downloads - 331 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- BH 1.69.0-1
- Biobase 2.42.0
- BiocGenerics 0.28.0
- BiocParallel 1.16.6
- Biostrings 2.50.2
- DelayedArray 0.8.0
- GenomeInfoDb 1.18.1
- GenomeInfoDbData 1.2.1
- GenomicAlignments 1.18.1
- GenomicRanges 1.34.0
- IRanges 2.16.0
- MASS 7.3-51.4
- Matrix 1.2-17
- R6 2.4.0
- RColorBrewer 1.1-2
- RCurl 1.95-4.12
- Rcpp 1.0.2
- RcppParallel 4.4.4
- Rsamtools 1.34.0
- S4Vectors 0.20.1
- ShortRead 1.40.0
- SummarizedExperiment 1.12.0
- XVector 0.22.0
- assertthat 0.2.1
- backports 1.1.5
- base64enc 0.1-3
- base 3.5.1
- bitops 1.0-6
- cli 1.1.0
- cluster 2.1.0
- colorspace 1.4-1
- compiler 3.5.1
- crayon 1.3.4
- dada2 1.10.0
- data.table 1.12.6
- datasets 3.5.1
- digest 0.6.22
- ellipsis 0.3.0
- evaluate 0.14
- fansi 0.4.0
- formatR 1.7
- futile.logger 1.4.3
- futile.options 1.0.1
- getopt 1.20.3
- ggplot2 3.2.1
- glue 1.3.1
- grDevices 3.5.1
- graphics 3.5.1
- grid 3.5.1
- gtable 0.3.0
- highr 0.8
- htmltools 0.4.0
- hwriter 1.3.2
- jsonlite 1.6.1
- knitr 1.28
- labeling 0.3
- lambda.r 1.2.4
- lattice 0.20-38
- latticeExtra 0.6-28
- lazyeval 0.2.2
- magrittr 1.5
- markdown 1.1
- matrixStats 0.55.0
- methods 3.5.1
- mgcv 1.8-29
- mime 0.9
- munsell 0.5.0
- nlme 3.1-141
- optparse 1.6.4
- parallel 3.5.1
- permute 0.9-5
- pillar 1.4.2
- pkgconfig 2.0.3
- plyr 1.8.4
- reshape2 1.4.3
- rlang 0.4.1
- rmarkdown 1.18
- scales 1.0.0
- snow 0.4-3
- splines 3.5.1
- stats4 3.5.1
- stats 3.5.1
- stringi 1.4.3
- stringr 1.4.0
- tcltk 3.5.1
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 2.1.3
- tinytex 0.22
- tools 3.5.1
- translations 3.5.1
- utf8 1.1.4
- utils 3.5.1
- vctrs 0.2.0
- vegan 2.5-6
- viridisLite 0.3.0
- withr 2.1.2
- xfun 0.13
- yaml 2.2.1
- zeallot 0.1.0
- zlibbioc 1.28.0
- debian/adduser 3.118
- debian/apt 1.8.2
- debian/base-files 10.3 deb10u3
- debian/base-passwd 3.5.46
- debian/bash 5.0-4
- debian/bsdutils 1:2.33.1-0.1
- debian/bzip2 1.0.6-9.2~deb10u1
- debian/ca-certificates 20190110
- debian/coreutils 8.30-3
- debian/dash 0.5.10.2-5
- debian/debconf 1.5.71
- debian/debian-archive-keyring 2019.1
- debian/debianutils 4.8.6.1
- debian/diffutils 1:3.7-3
- debian/dpkg 1.19.7
- debian/e2fsprogs 1.44.5-1 deb10u3
- debian/fdisk 2.33.1-0.1
- debian/file 1:5.35-4 deb10u1
- debian/findutils 4.6.0 git 20190209-2
- debian/gcc-8-base 8.3.0-6
- debian/git-man 1:2.20.1-2 deb10u1
- debian/git 1:2.20.1-2 deb10u1
- debian/gpgv 2.2.12-1 deb10u1
- debian/grep 3.3-1
- debian/gzip 1.9-3
- debian/hostname 3.21
- debian/init-system-helpers 1.56 nmu1
- debian/krb5-locales 1.17-3
- debian/less 487-0.1 b1
- debian/libacl1 2.2.53-4
- debian/libapr1 1.6.5-1 b1
- debian/libaprutil1 1.6.1-4
- debian/libapt-pkg5.0 1.8.2
- debian/libattr1 1:2.4.48-4
- debian/libaudit-common 1:2.8.4-3
- debian/libaudit1 1:2.8.4-3
- debian/libblkid1 2.33.1-0.1
- debian/libbsd0 0.9.1-2
- debian/libbz2-1.0 1.0.6-9.2~deb10u1
- debian/libc-bin 2.28-10
- debian/libc6 2.28-10
- debian/libcap-ng0 0.7.9-2
- debian/libcom-err2 1.44.5-1 deb10u3
- debian/libcurl3-gnutls 7.64.0-4 deb10u1
- debian/libdb5.3 5.3.28 dfsg1-0.5
- debian/libdebconfclient0 0.249
- debian/libedit2 3.1-20181209-1
- debian/liberror-perl 0.17027-2
- debian/libexpat1 2.2.6-2 deb10u1
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- debian/libfdisk1 2.33.1-0.1
- debian/libffi6 3.2.1-9
- debian/libgcc1 1:8.3.0-6
- debian/libgcrypt20 1.8.4-5
- debian/libgdbm-compat4 1.18.1-4
- debian/libgdbm6 1.18.1-4
- debian/libglib2.0-0 2.58.3-2 deb10u2
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- debian/libgmp10 2:6.1.2 dfsg-4
- debian/libgnutls30 3.6.7-4 deb10u2
- debian/libgpg-error0 1.35-1
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- debian/libmount1 2.33.1-0.1
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- debian/libnettle6 3.4.1-1
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- debian/libp11-kit0 0.23.15-2
- debian/libpam-modules-bin 1.3.1-5
- debian/libpam-modules 1.3.1-5
- debian/libpam-runtime 1.3.1-5
- debian/libpam0g 1.3.1-5
- debian/libpcre2-8-0 10.32-5
- debian/libpcre3 2:8.39-12
- debian/libperl5.28 5.28.1-6
- debian/libprocps7 2:3.3.15-2
- debian/libpsl5 0.20.2-2
- debian/libpython-stdlib 2.7.16-1
- debian/libpython2-stdlib 2.7.16-1
- debian/libpython2.7-minimal 2.7.16-2 deb10u1
- debian/libpython2.7-stdlib 2.7.16-2 deb10u1
- debian/libreadline7 7.0-5
- debian/librtmp1 2.4 20151223.gitfa8646d.1-2
- debian/libsasl2-2 2.1.27 dfsg-1 deb10u1
- debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u1
- debian/libsasl2-modules 2.1.27 dfsg-1 deb10u1
- debian/libseccomp2 2.3.3-4
- debian/libselinux1 2.8-1 b1
- debian/libsemanage-common 2.8-2
- debian/libsemanage1 2.8-2
- debian/libsepol1 2.8-1
- debian/libserf-1-1 1.3.9-7 b10
- debian/libsm6 2:1.2.3-1
- debian/libsmartcols1 2.33.1-0.1
- debian/libsqlite3-0 3.27.2-3
- debian/libss2 1.44.5-1 deb10u3
- debian/libssh2-1 1.8.0-2.1
- debian/libssl1.1 1.1.1d-0 deb10u2
- debian/libstdc 6 8.3.0-6
- debian/libsvn1 1.10.4-1 deb10u1
- debian/libsystemd0 241-7~deb10u3
- debian/libtasn1-6 4.13-3
- debian/libtinfo6 6.1 20181013-2 deb10u2
- debian/libudev1 241-7~deb10u3
- debian/libunistring2 0.9.10-1
- debian/libutf8proc2 2.3.0-1
- debian/libuuid1 2.33.1-0.1
- debian/libx11-6 2:1.6.7-1
- debian/libx11-data 2:1.6.7-1
- debian/libxau6 1:1.0.8-1 b2
- debian/libxcb1 1.13.1-2
- debian/libxdmcp6 1:1.1.2-3
- debian/libxext6 2:1.3.3-1 b2
- debian/libxml2 2.9.4 dfsg1-7 b3
- debian/libxmuu1 2:1.1.2-2 b3
- debian/libxrender1 1:0.9.10-1
- debian/libzstd1 1.3.8 dfsg-3
- debian/login 1:4.5-1.1
- debian/lsb-base 10.2019051400
- debian/mawk 1.3.3-17 b3
- debian/mercurial-common 4.8.2-1 deb10u1
- debian/mercurial 4.8.2-1 deb10u1
- debian/mime-support 3.62
- debian/mount 2.33.1-0.1
- debian/ncurses-base 6.1 20181013-2 deb10u2
- debian/ncurses-bin 6.1 20181013-2 deb10u2
- debian/netbase 5.6
- debian/openssh-client 1:7.9p1-10 deb10u2
- debian/openssl 1.1.1d-0 deb10u2
- debian/passwd 1:4.5-1.1
- debian/patch 2.7.6-3 deb10u1
- debian/perl-base 5.28.1-6
- debian/perl-modules-5.28 5.28.1-6
- debian/perl 5.28.1-6
- debian/procps 2:3.3.15-2
- debian/psmisc 23.2-1
- debian/publicsuffix 20190415.1030-1
- debian/python-minimal 2.7.16-1
- debian/python2-minimal 2.7.16-1
- debian/python2.7-minimal 2.7.16-2 deb10u1
- debian/python2.7 2.7.16-2 deb10u1
- debian/python2 2.7.16-1
- debian/python 2.7.16-1
- debian/readline-common 7.0-5
- debian/sed 4.7-1
- debian/sensible-utils 0.0.12
- debian/shared-mime-info 1.10-1
- debian/subversion 1.10.4-1 deb10u1
- debian/sysvinit-utils 2.93-8
- debian/tar 1.30 dfsg-6
- debian/tzdata 2019c-0 deb10u1
- debian/ucf 3.0038 nmu1
- debian/util-linux 2.33.1-0.1
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- debian/x11-common 1:7.7 19
- debian/xauth 1:1.0.10-1
- debian/xdg-user-dirs 0.17-2
- debian/xz-utils 5.2.4-1
- debian/zlib1g 1:1.2.11.dfsg-1
- edirect (devel)
- github.com/fatih/color v1.9.0
- github.com/fiam/gounidecode v0.0.0-20150629112515-8deddbd03fec
- github.com/gedex/inflector v0.0.0-20170307190818-16278e9db813
- github.com/klauspost/cpuid v1.3.1
- github.com/mattn/go-colorable v0.1.4
- github.com/mattn/go-isatty v0.0.11
- github.com/pbnjay/memory v0.0.0-20190104145345-974d429e7ae4
- github.com/stretchr/testify v1.6.1
- github.com/surge/glog v0.0.0-20141108051140-2578deb2b95c
- github.com/surgebase/porter2 v0.0.0-20150829210152-56e4718818e8
- golang.org/x/sys v0.0.0-20191026070338-33540a1f6037
- golang.org/x/text v0.3.3
- stdlib 1.14.3
- cisd-jhdf5:cisd-jhdf5 *
- commons-beanutils:commons-beanutils 1.8.3
- commons-collections:commons-collections 3.2.1
- commons-io:commons-io 1.4
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- jbzip2:jbzip2 0.9
- jrt-fs:jrt-fs 11.0.1-internal
- net.sf.ezmorph:ezmorph 1.0.6
- sam:sam 1.103
- seppJsonMerger:seppJsonMerger *
- jquery-ui 1.12.1
- q2-alignment 2019.10.0
- q2-composition 2019.10.0
- q2-cutadapt 2019.10.0
- q2-dada2 2019.10.0
- q2-deblur 2019.10.0
- q2-demux 2019.10.0
- q2-diversity 2019.10.0
- q2-emperor 2019.10.0
- q2-feature-classifier 2019.10.0
- q2-feature-table 2019.10.0
- q2-fragment-insertion 2019.10.0
- q2-gneiss 2019.10.0
- q2-longitudinal 2019.10.0
- q2-metadata 2019.10.0
- q2-phylogeny 2019.10.0
- q2-quality-control 2019.10.0
- q2-quality-filter 2019.10.0
- q2-sample-classifier 2019.10.0
- q2-taxa 2019.10.0
- q2-types 2019.10.0
- q2-vsearch 2019.10.0
- q2cli 2019.10.0