Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

danhumassmed/de-seq-tools : 1.0.1

Software for Bioinformatics pipelines HOMER, DESeq2, samtools, edgeR

Latest release: about 1 year ago - 26 downloads - 540 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
BH 1.81.0-1
Biobase 2.60.0
BiocGenerics 0.46.0
BiocParallel 1.34.2
DBI 1.1.3
DESeq2 1.40.2
DelayedArray 0.26.6
GenomeInfoDb 1.36.1
GenomeInfoDbData 1.2.10
GenomicRanges 1.52.0
IRanges 2.34.1
IRdisplay 1.1
IRkernel 1.3.2
KernSmooth 2.23-22
MASS 7.3-60
Matrix 1.6-1.1
MatrixGenerics 1.12.2
ModelMetrics 1.2.2.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
Rcpp 1.0.11
RcppArmadillo 0.12.6.4.0
RcppEigen 0.3.3.9.3
S4Arrays 1.0.4
S4Vectors 0.38.1
SQUAREM 2021.1
SummarizedExperiment 1.30.2
TTR 0.24.3
XVector 0.40.0
argparse 2.2.2
askpass 1.2.0
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.3.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
broom 1.0.5
bslib 0.5.1
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
caret 6.0-94
cellranger 1.1.0
class 7.3-22
cli 3.6.1
clipr 0.8.0
clock 0.7.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
commonmark 1.9.0
compiler 4.3.1
conflicted 1.2.0
cpp11 0.4.6
crayon 1.5.2
crul 1.4.0
curl 5.1.0
data.table 1.14.8
datasets 4.3.1
dbplyr 2.3.4
diagram 1.6.5
digest 0.6.33
dplyr 1.1.3
dtplyr 1.3.1
e1071 1.7-13
edgeR 3.42.4
ellipsis 0.3.2
evaluate 0.22
fansi 1.0.5
farver 2.1.1
fastmap 1.1.1
findpython 1.0.8
fontawesome 0.5.2
forcats 1.0.0
foreach 1.5.2
foreign 0.8-85
formatR 1.14
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
gargle 1.5.2
generics 0.1.3
ggplot2 3.4.4
gistr 0.9.0
glmnet 4.1-8
globals 0.16.2
glue 1.6.2
googledrive 2.1.1
googlesheets4 1.1.1
gower 1.0.1
gplots 3.1.3
grDevices 4.3.1
graphics 4.3.1
grid 4.3.1
gtable 0.3.4
gtools 3.9.4
hardhat 1.3.0
haven 2.5.3
hexbin 1.28.3
highr 0.10
hms 1.1.3
htmltools 0.5.6.1
htmlwidgets 1.6.2
httpcode 0.3.0
httpuv 1.6.11
httr 1.4.7
ids 1.0.1
ipred 0.9-14
isoband 0.2.7
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.7
knitr 1.44
labeling 0.4.3
lambda.r 1.2.4
later 1.3.1
lattice 0.22-5
lava 1.7.2.1
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.56.2
linkXTS 1.0
listenv 0.9.0
lobstr 1.1.2
locfit 1.5-9.8
lubridate 1.9.3
magrittr 2.0.3
maps 3.4.1
matrixStats 1.0.0
memoise 2.0.1
methods 4.3.1
mgcv 1.9-0
mime 0.12
modelr 0.1.11
munsell 0.5.0
nlme 3.1-163
nnet 7.3-19
numDeriv 2016.8-1.1
openssl 2.1.1
pROC 1.18.4
parallel 4.3.1
parallelly 1.36.0
pbdZMQ 0.3-10
pillar 1.9.0
pkgconfig 2.0.3
plyr 1.8.9
prettyunits 1.2.0
processx 3.8.2
prodlim 2023.08.28
progress 1.2.2
progressr 0.14.0
promises 1.2.1
proxy 0.4-27
pryr 0.1.6
ps 1.7.5
purrr 1.0.2
quantmod 0.4.25
ragg 1.2.6
randomForest 4.7-1.1
rappdirs 0.3.3
rbokeh 0.5.2
readr 2.1.4
readxl 1.4.3
recipes 1.0.8
rematch2 2.1.2
rematch 2.0.0
repr 1.1.6
reprex 2.0.2
reshape2 1.4.4
rlang 1.1.1
rmarkdown 2.25
rpart 4.1.21
rstudioapi 0.15.0
rvest 1.0.3
sass 0.4.7
scales 1.2.1
selectr 0.4-2
shape 1.4.6
shiny 1.7.5.1
snow 0.4-4
sourcetools 0.1.7-1
spatial 7.3-17
splines 4.3.1
stats4 4.3.1
stats 4.3.1
stringi 1.7.12
stringr 1.5.0
survival 3.5-7
svglite 2.1.2
sys 3.4.2
systemfonts 1.0.5
tcltk 4.3.1
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
textshaping 0.3.7
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 2.0.0
timeDate 4022.108
timechange 0.2.0
tinytex 0.48
tools 4.3.1
translations 4.3.1
triebeard 0.4.1
tximport 1.28.0
tzdb 0.4.0
urltools 1.7.3
utf8 1.2.4
utils 4.3.1
uuid 1.1-1
vctrs 0.6.4
viridisLite 0.4.2
vroom 1.6.4
withr 2.5.1
xfun 0.40
xml2 1.3.5
xtable 1.8-4
xts 0.13.1
yaml 2.3.7
zlibbioc 1.46.0
zoo 1.8-12

debian/adduser 3.118
debian/apt 1.8.2.3
debian/base-files 10.3 deb10u13
debian/base-passwd 3.5.46
debian/bash 5.0-4
debian/binutils-common 2.31.1-16
debian/binutils-x86-64-linux-gnu 2.31.1-16
debian/binutils 2.31.1-16
debian/bsdutils 1:2.33.1-0.1
debian/build-essential 12.6
debian/bzip2 1.0.6-9.2~deb10u2
debian/ca-certificates 20200601~deb10u2
debian/coreutils 8.30-3
debian/cpp-8 8.3.0-6
debian/cpp 4:8.3.0-1
debian/dash 0.5.10.2-5
debian/debconf 1.5.71 deb10u1
debian/debian-archive-keyring 2019.1 deb10u1
debian/debianutils 4.8.6.1
debian/diffutils 1:3.7-3
debian/dpkg-dev 1.19.8
debian/dpkg 1.19.8
debian/e2fsprogs 1.44.5-1 deb10u3
debian/fdisk 2.33.1-0.1
debian/findutils 4.6.0 git 20190209-2
debian/g -8 8.3.0-6
debian/g 4:8.3.0-1
debian/gcc-8-base 8.3.0-6
debian/gcc-8 8.3.0-6
debian/gcc 4:8.3.0-1
debian/git-man 1:2.20.1-2 deb10u8
debian/git 1:2.20.1-2 deb10u8
debian/gpgv 2.2.12-1 deb10u2
debian/grep 3.3-1
debian/gzip 1.9-3 deb10u1
debian/hostname 3.21
debian/icu-devtools 63.1-6 deb10u3
debian/init-system-helpers 1.56 nmu1
debian/libacl1 2.2.53-4
debian/libapt-pkg5.0 1.8.2.3
debian/libarchive13 3.3.3-4 deb10u3
debian/libasan5 8.3.0-6
debian/libatomic1 8.3.0-6
debian/libattr1 1:2.4.48-4
debian/libaudit-common 1:2.8.4-3
debian/libaudit1 1:2.8.4-3
debian/libbinutils 2.31.1-16
debian/libblkid1 2.33.1-0.1
debian/libbsd0 0.9.1-2 deb10u1
debian/libbz2-1.0 1.0.6-9.2~deb10u2
debian/libc-bin 2.28-10 deb10u2
debian/libc-dev-bin 2.28-10 deb10u2
debian/libc6-dev 2.28-10 deb10u2
debian/libc6 2.28-10 deb10u2
debian/libcap-ng0 0.7.9-2
debian/libcc1-0 8.3.0-6
debian/libcom-err2 1.44.5-1 deb10u3
debian/libcurl3-gnutls 7.64.0-4 deb10u6
debian/libdb5.3 5.3.28 dfsg1-0.5
debian/libdebconfclient0 0.249
debian/libdpkg-perl 1.19.8
debian/libedit2 3.1-20181209-1
debian/liberror-perl 0.17027-2
debian/libexpat1 2.2.6-2 deb10u6
debian/libext2fs2 1.44.5-1 deb10u3
debian/libfdisk1 2.33.1-0.1
debian/libffi6 3.2.1-9
debian/libgcc-8-dev 8.3.0-6
debian/libgcc1 1:8.3.0-6
debian/libgcrypt20 1.8.4-5 deb10u1
debian/libgdbm-compat4 1.18.1-4
debian/libgdbm6 1.18.1-4
debian/libglib2.0-0 2.58.3-2 deb10u4
debian/libgmp10 2:6.1.2 dfsg-4 deb10u1
debian/libgnutls30 3.6.7-4 deb10u10
debian/libgomp1 8.3.0-6
debian/libgpg-error0 1.35-1
debian/libgssapi-krb5-2 1.17-3 deb10u5
debian/libhogweed4 3.4.1-1 deb10u1
debian/libice6 2:1.0.9-2
debian/libicu-dev 63.1-6 deb10u3
debian/libicu63 63.1-6 deb10u3
debian/libidn2-0 2.0.5-1 deb10u1
debian/libisl19 0.20-2
debian/libitm1 8.3.0-6
debian/libk5crypto3 1.17-3 deb10u5
debian/libkeyutils1 1.6-6
debian/libkrb5-3 1.17-3 deb10u5
debian/libkrb5support0 1.17-3 deb10u5
debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u7
debian/libldap-common 2.4.47 dfsg-3 deb10u7
debian/liblsan0 8.3.0-6
debian/liblz4-1 1.8.3-1 deb10u1
debian/liblzma5 5.2.4-1 deb10u1
debian/libmount1 2.33.1-0.1
debian/libmpc3 1.1.0-1
debian/libmpfr6 4.0.2-1
debian/libmpx2 8.3.0-6
debian/libncurses6 6.1 20181013-2 deb10u3
debian/libncursesw6 6.1 20181013-2 deb10u3
debian/libnettle6 3.4.1-1 deb10u1
debian/libnghttp2-14 1.36.0-2 deb10u1
debian/libp11-kit0 0.23.15-2 deb10u1
debian/libpam-modules-bin 1.3.1-5
debian/libpam-modules 1.3.1-5
debian/libpam-runtime 1.3.1-5
debian/libpam0g 1.3.1-5
debian/libpcre2-8-0 10.32-5 deb10u1
debian/libpcre3 2:8.39-12
debian/libperl5.28 5.28.1-6 deb10u1
debian/libprocps7 2:3.3.15-2
debian/libpsl5 0.20.2-2
debian/libquadmath0 8.3.0-6
debian/librtmp1 2.4 20151223.gitfa8646d.1-2
debian/libsasl2-2 2.1.27 dfsg-1 deb10u2
debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u2
debian/libseccomp2 2.3.3-4
debian/libselinux1 2.8-1 b1
debian/libsemanage-common 2.8-2
debian/libsemanage1 2.8-2
debian/libsepol1 2.8-1
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.33.1-0.1
debian/libss2 1.44.5-1 deb10u3
debian/libssh2-1 1.8.0-2.1
debian/libssl1.1 1.1.1n-0 deb10u5
debian/libstdc -8-dev 8.3.0-6
debian/libstdc 6 8.3.0-6
debian/libsystemd0 241-7~deb10u9
debian/libtasn1-6 4.13-3 deb10u1
debian/libtinfo6 6.1 20181013-2 deb10u3
debian/libtsan0 8.3.0-6
debian/libubsan1 8.3.0-6
debian/libudev1 241-7~deb10u9
debian/libunistring2 0.9.10-1
debian/libuuid1 2.33.1-0.1
debian/libx11-6 2:1.6.7-1 deb10u2
debian/libx11-data 2:1.6.7-1 deb10u2
debian/libxau6 1:1.0.8-1 b2
debian/libxcb1 1.13.1-2
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1 b2
debian/libxml2 2.9.4 dfsg1-7 deb10u6
debian/libxrender1 1:0.9.10-1
debian/libzstd1 1.3.8 dfsg-3 deb10u2
debian/linux-libc-dev 4.19.282-1
debian/login 1:4.5-1.1
debian/lsb-base 10.2019051400
debian/make 4.2.1-1.2
debian/mawk 1.3.3-17 b3
debian/mount 2.33.1-0.1
debian/ncurses-base 6.1 20181013-2 deb10u3
debian/ncurses-bin 6.1 20181013-2 deb10u3
debian/openssh-client 1:7.9p1-10 deb10u2
debian/openssl 1.1.1n-0 deb10u5
debian/passwd 1:4.5-1.1
debian/patch 2.7.6-3 deb10u1
debian/perl-base 5.28.1-6 deb10u1
debian/perl-modules-5.28 5.28.1-6 deb10u1
debian/perl 5.28.1-6 deb10u1
debian/pkg-config 0.29-6
debian/procps 2:3.3.15-2
debian/sed 4.7-1
debian/sysvinit-utils 2.93-8
debian/tar 1.30 dfsg-6
debian/tzdata 2021a-0 deb10u11
debian/unzip 6.0-23 deb10u3
debian/util-linux 2.33.1-0.1
debian/wget 1.20.1-1.1
debian/x11-common 1:7.7 19
debian/xz-utils 5.2.4-1 deb10u1
debian/zip 3.0-11 b1
debian/zlib1g 1:1.2.11.dfsg-1 deb10u2

python 3.8.17

bazil.org/fuse v0.0.0-20221209211307-2abb8038c751
cloud.google.com/go/compute/metadata v0.2.3
github.com/Azure/azure-sdk-for-go/sdk/azcore v1.6.0
github.com/Azure/azure-sdk-for-go/sdk/azidentity v1.3.0
github.com/Azure/azure-sdk-for-go/sdk/internal v1.3.0
github.com/Azure/azure-sdk-for-go/sdk/storage/azblob v1.0.0
github.com/Azure/go-ntlmssp v0.0.0-20221128193559-754e69321358
github.com/AzureAD/microsoft-authentication-library-for-go v1.0.0
github.com/Max-Sum/base32768 v0.0.0-20230304063302-18e6ce5945fd
github.com/ProtonMail/go-crypto v0.0.0-20230217124315-7d5c6f04bbb8
github.com/Unknwon/goconfig v1.0.0
github.com/a8m/tree v0.0.0-20230208161321-36ae24ddad15
github.com/aalpar/deheap v0.0.0-20210914013432-0cc84d79dec3
github.com/abbot/go-http-auth v0.4.0
github.com/anacrolix/dms v1.5.0
github.com/anacrolix/log v0.13.1
github.com/artyom/mtab v1.0.0
github.com/atotto/clipboard v0.1.4
github.com/aws/aws-sdk-go v1.44.246
github.com/beorn7/perks v1.0.1
github.com/buengese/sgzip v0.1.1
github.com/calebcase/tmpfile v1.0.3
github.com/cespare/xxhash/v2 v2.2.0
github.com/cloudflare/circl v1.3.3
github.com/colinmarc/hdfs/v2 v2.3.0
github.com/coreos/go-semver v0.3.1
github.com/coreos/go-systemd v0.0.0-20191104093116-d3cd4ed1dbcf
github.com/cpuguy83/go-md2man/v2 v2.0.2
github.com/dropbox/dropbox-sdk-go-unofficial/v6 v6.0.5
github.com/gabriel-vasile/mimetype v1.4.2
github.com/gdamore/encoding v1.0.0
github.com/gdamore/tcell/v2 v2.6.0
github.com/geoffgarside/ber v1.1.0
github.com/go-chi/chi/v5 v5.0.8
github.com/gofrs/flock v0.8.1
github.com/gogo/protobuf v1.3.2
github.com/golang-jwt/jwt/v4 v4.5.0
github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da
github.com/golang/protobuf v1.5.3
github.com/google/go-querystring v1.1.0
github.com/google/uuid v1.3.0
github.com/googleapis/enterprise-certificate-proxy v0.2.3
github.com/googleapis/gax-go/v2 v2.8.0
github.com/hanwen/go-fuse/v2 v2.2.1-0.20230410213758-80c1c8221982
github.com/hashicorp/errwrap v1.0.0
github.com/hashicorp/go-multierror v1.1.1
github.com/hashicorp/go-uuid v1.0.3
github.com/hirochachacha/go-smb2 v1.1.0
github.com/iguanesolutions/go-systemd/v5 v5.1.1
github.com/jcmturner/aescts/v2 v2.0.0
github.com/jcmturner/dnsutils/v2 v2.0.0
github.com/jcmturner/gofork v1.7.6
github.com/jcmturner/goidentity/v6 v6.0.1
github.com/jcmturner/gokrb5/v8 v8.4.4
github.com/jcmturner/rpc/v2 v2.0.3
github.com/jmespath/go-jmespath v0.4.0
github.com/jtolio/eventkit v0.0.0-20221004135224-074cf276595b
github.com/jzelinskie/whirlpool v0.0.0-20201016144138-0675e54bb004
github.com/klauspost/compress v1.16.5
github.com/klauspost/cpuid/v2 v2.0.12
github.com/koofr/go-httpclient v0.0.0-20230225102643-5d51a2e9dea6
github.com/koofr/go-koofrclient v0.0.0-20221207135200-cbd7fc9ad6a6
github.com/kr/fs v0.1.0
github.com/kylelemons/godebug v1.1.0
github.com/lucasb-eyer/go-colorful v1.2.0
github.com/mattn/go-colorable v0.1.13
github.com/mattn/go-isatty v0.0.16
github.com/mattn/go-runewidth v0.0.14
github.com/matttproud/golang_protobuf_extensions v1.0.1
github.com/mitchellh/go-homedir v1.1.0
github.com/ncw/go-acd v0.0.0-20201019170801-fe55f33415b1
github.com/ncw/swift/v2 v2.0.1
github.com/oracle/oci-go-sdk/v65 v65.34.0
github.com/patrickmn/go-cache v2.1.0 incompatible
github.com/pengsrc/go-shared v0.2.1-0.20190131101655-1999055a4a14
github.com/pkg/browser v0.0.0-20210911075715-681adbf594b8
github.com/pkg/sftp v1.13.6-0.20230213180117-971c283182b6
github.com/pkg/xattr v0.4.9
github.com/prometheus/client_golang v1.14.0
github.com/prometheus/client_model v0.3.0
github.com/prometheus/common v0.37.0
github.com/prometheus/procfs v0.8.0
github.com/putdotio/go-putio/putio v0.0.0-20200123120452-16d982cac2b8
github.com/rclone/ftp v0.0.0-20230327202000-dadc1f64e87d
github.com/rclone/rclone v0.0.0-20230717133102-bd1fbcae12f7
github.com/rfjakob/eme v1.1.2
github.com/rivo/uniseg v0.4.4
github.com/russross/blackfriday/v2 v2.1.0
github.com/shirou/gopsutil/v3 v3.23.5
github.com/sirupsen/logrus v1.9.0
github.com/skratchdot/open-golang v0.0.0-20200116055534-eef842397966
github.com/sony/gobreaker v0.5.0
github.com/spacemonkeygo/monkit/v3 v3.0.19
github.com/spf13/cobra v1.7.0
github.com/spf13/pflag v1.0.5
github.com/t3rm1n4l/go-mega v0.0.0-20230228171823-a01a2cda13ca
github.com/vivint/infectious v0.0.0-20200605153912-25a574ae18a3
github.com/xanzy/ssh-agent v0.3.3
github.com/youmark/pkcs8 v0.0.0-20201027041543-1326539a0a0a
github.com/yunify/qingstor-sdk-go/v3 v3.2.0
github.com/zeebo/blake3 v0.2.3
github.com/zeebo/errs v1.3.0
go.etcd.io/bbolt v1.3.7
go.opencensus.io v0.24.0
goftp.io/server v1.0.0-rc1
golang.org/x/crypto v0.7.0
golang.org/x/net v0.8.0
golang.org/x/oauth2 v0.6.0
golang.org/x/sync v0.1.0
golang.org/x/sys v0.8.0
golang.org/x/term v0.7.0
golang.org/x/text v0.8.0
golang.org/x/time v0.3.0
google.golang.org/api v0.115.0
google.golang.org/genproto v0.0.0-20230331144136-dcfb400f0633
google.golang.org/grpc v1.54.0
google.golang.org/protobuf v1.30.0
gopkg.in/yaml.v2 v2.4.0
gopkg.in/yaml.v3 v3.0.1
stdlib 1.20.6
storj.io/common v0.0.0-20221123115229-fed3e6651b63
storj.io/drpc v0.0.32
storj.io/uplink v1.10.0

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2

flask 1.1.1