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alexeymakhonin/bioinf-2022-notebook : latest

Latest release: almost 2 years ago - 9 downloads - 213 dependencies

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Dependencies

XVector 0.38.0
XML 3.99-0.13
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.78.0-0
Biobase 2.58.0
BiocGenerics 0.44.0
BiocManager 1.30.19
BiocParallel 1.32.5
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DESeq2 1.38.2
DelayedArray 0.24.0
GenomeInfoDb 1.34.4
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.2
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-1
MatrixGenerics 1.10.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RSQLite 2.2.20
Rcpp 1.0.9
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
RcppNumerical 0.4-0
S4Vectors 0.36.1
SummarizedExperiment 1.28.0
annotate 1.76.0
apeglm 1.20.0
askpass 1.1
base 4.2.2
bbmle 1.0.25
bdsmatrix 1.3-6
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
cachem 1.0.6
class 7.3-20
cli 3.5.0
cluster 2.1.4
coda 0.19-4
codetools 0.2-18
colorspace 2.0-3
compiler 4.2.2
cpp11 0.4.3
crayon 1.5.2
curl 4.3.3
datasets 4.2.2
docopt 0.7.1
emdbook 1.3.12
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
foreign 0.8-83
formatR 1.13
futile.logger 1.4.3
futile.options 1.0.1
geneplotter 1.76.0
ggplot2 3.4.0
glue 1.6.2
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.1
httr 1.4.4
isoband 0.2.7
jsonlite 1.8.4
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.3
littler 0.3.16
locfit 1.5-9.6
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-160
nnet 7.3-18
numDeriv 2016.8-1.1
openssl 2.0.5
org.testing.db 0.1
parallel 4.2.2
pillar 1.8.1
pkgconfig 2.0.3
plogr 0.2.0
plyr 1.8.8
png 0.1-8
rlang 1.0.6
rpart 4.1.19
scales 1.2.1
snow 0.4-4
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
survival 3.4-0
sys 3.4.1
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.8
tools 4.2.2
translations 4.2.2
utf8 1.2.2
utils 4.2.2
vctrs 0.5.1
viridisLite 0.4.1
withr 2.5.0
xtable 1.8-4
zlibbioc 1.44.0

bash 5.2.0
python 3.10.9

jupyterlab_pygments 0.2.2

Jinja2 3.1.2
MarkupSafe 2.1.1
Pillow 9.3.0
Pygments 2.13.0
Send2Trash 1.8.0
argon2-cffi-bindings 21.2.0
argon2-cffi 21.3.0
asttokens 2.2.1
attrs 22.2.0
backcall 0.2.0
beautifulsoup4 4.11.1
bleach 5.0.1
bytecode 0.13.0.dev0
cffi 1.15.1
comm 0.1.2
contourpy 1.0.6
cycler 0.11.0
debugpy 1.6.4
decorator 5.1.1
defusedxml 0.7.1
entrypoints 0.4
executing 1.2.0
fastjsonschema 2.16.2
fonttools 4.38.0
html5lib 1.1
ipykernel 6.19.4
ipython-genutils 0.2.0
ipython 8.7.0
jedi 0.18.2
jsonschema 4.17.3
jupyter_client 7.4.8
jupyter_core 5.1.1
jupyterlab-pygments 0.2.2
kiwisolver 1.4.4
matplotlib-inline 0.1.6
matplotlib 3.6.2
mistune 2.0.4
mypy 0.931
nbclient 0.7.2
nbconvert 7.2.7
nbformat 5.7.1
nest-asyncio 1.5.6
notebook 6.4.6
numpy 1.23.2
packaging 22.0
pandas 1.4.3
pandocfilters 1.5.0
parso 0.8.3
pexpect 4.8.0
pickleshare 0.7.5
pip 22.3.1
platformdirs 2.6.0
prometheus-client 0.15.0
prompt-toolkit 3.0.36
psutil 5.9.4
ptyprocess 0.7.0
pure-eval 0.2.2
pycparser 2.21
pydata-sphinx-theme 0.9.0
pyparsing 3.0.9
pyrsistent 0.19.2
python-dateutil 2.8.2
pytz-deprecation-shim 0.1.0.post0
pytz 2022.7
pyzmq 24.0.1
rpy2 3.5.6
scipy 1.9.0
seaborn 0.11.2
setuptools 65.5.0
six 1.16.0
soupsieve 2.3.2.post1
stack-data 0.6.2
terminado 0.17.1
tinycss2 1.2.1
tornado 6.2
tqdm 4.64.1
traitlets 5.8.0
tzdata 2022.7
tzlocal 4.2
wcwidth 0.2.5
webencodings 0.5.1
wheel 0.38.4