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hoonbiolab/gatk4_scnv : v1.1

Latest release: about 3 years ago - 29 downloads - 811 dependencies

Dependencies

ASCAT 2.5.2
BiocGenerics 0.32.0
BiocManager 1.30.16
BiocVersion 3.10.1
DBI 1.1.1
GenomeInfoDb 1.22.1
GenomeInfoDbData 1.2.2
GenomicRanges 1.38.0
IRanges 2.20.2
MASS 7.3-54
Matrix 1.3-4
R.devices 2.17.0
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.10.1
R6 2.5.1
RColorBrewer 1.1-2
RCurl 1.98-1.4
Rcpp 1.0.7
S4Vectors 0.24.4
XVector 0.26.0
askpass 1.1
assertthat 0.2.1
backports 1.2.1
base64enc 0.1-3
base 3.6.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.2
broom 0.7.9
callr 3.7.0
cellranger 1.1.0
cli 3.0.1
clipr 0.7.1
colorspace 2.0-2
compiler 3.6.1
cpp11 0.3.1
crayon 1.4.1
curl 4.3.2
data.table 1.14.0
datasets 3.6.1
dbplyr 2.1.1
digest 0.6.27
dplyr 1.0.7
dtplyr 1.1.0
ellipsis 0.3.2
evaluate 0.14
fansi 0.5.0
farver 2.1.0
fastmap 1.1.0
forcats 0.5.1
fs 1.5.0
gargle 1.2.0
generics 0.1.0
getopt 1.20.3
ggplot2 3.3.5
glue 1.4.2
googledrive 2.0.0
googlesheets4 1.0.0
grDevices 3.6.1
graphics 3.6.1
grid 3.6.1
gtable 0.3.0
haven 2.4.3
highr 0.9
hms 1.1.0
htmltools 0.5.2
httr 1.4.2
ids 1.0.1
igraph 1.2.6
isoband 0.2.5
jsonlite 1.7.2
knitr 1.33
labeling 0.4.2
lattice 0.20-44
lifecycle 1.0.0
lubridate 1.7.10
magrittr 2.0.1
markdown 1.1
methods 3.6.1
mgcv 1.8-36
mime 0.11
modelr 0.1.8
munsell 0.5.0
nat.utils 0.5.1
nlme 3.1-152
openssl 1.4.4
optparse 1.6.6
parallel 3.6.1
pillar 1.6.2
pkgconfig 2.0.3
plyr 1.8.6
prettyunits 1.1.1
processx 3.5.2
progress 1.2.2
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
readr 2.0.1
readxl 1.3.1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.1
rlang 0.4.11
rmarkdown 2.10
rstudioapi 0.13
rvest 1.0.1
scales 1.1.1
selectr 0.4-2
splines 3.6.1
stats4 3.6.1
stats 3.6.1
stringi 1.7.4
stringr 1.4.0
sys 3.4
tcltk 3.6.1
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.4
tidyr 1.1.3
tidyselect 1.1.1
tidyverse 1.3.1
tinytex 0.33
tools 3.6.1
translations 3.6.1
tzdb 0.1.2
utf8 1.2.2
utils 3.6.1
uuid 0.1-4
vctrs 0.3.8
viridisLite 0.4.0
vroom 1.5.4
withr 2.4.2
xfun 0.25
xml2 1.3.2
yaml 2.2.1
zlibbioc 1.32.0

python 2.7.15
python 3.9.5
python 3.9.7

Jinja2 2.11.2
Keras-Preprocessing 1.1.2
Keras 2.4.3
Mako 1.1.5
Markdown 3.3.4
MarkupSafe 2.0.1
Pillow 6.2.2
PyJWT 2.1.0
PySocks 1.7.1
PyWavelets 1.0.3
PyYAML 5.4.1
Theano 1.0.5
Werkzeug 2.0.1
absl-py 0.13.0
aiohttp 3.7.4.post0
argparse 1.2.1
astor 0.8.1
astunparse 1.6.3
async-timeout 3.0.1
attrs 21.2.0
backports-abc 0.5
backports.functools-lru-cache 1.6.1
beautifulsoup4 4.9.3
blinker 1.4
brotlipy 0.7.0
cachetools 4.2.2
certifi 2019.11.28
certifi 2021.5.30
cffi 1.14.6
chardet 4.0.0
charset-normalizer 2.0.4
click 8.0.1
cloudpickle 1.3.0
conda-build 3.21.4
conda-package-handling 1.7.3
conda 4.10.3
cryptography 3.4.7
cycler 0.10.0
dataclasses 0.8
decorator 4.4.2
filelock 3.0.12
flask 0.10.1
flatbuffers 2.0
functools32 3.2.3.post2
futures 3.3.0
gast 0.3.3
gast 0.4.0
glob2 0.7
google-auth-oauthlib 0.4.5
google-auth 1.35.0
google-pasta 0.2.0
grpcio 1.38.1
h5py 2.10.0
idna 3.2
importlib-metadata 4.8.1
intervaltree 3.1.0
kiwisolver 1.1.0
libarchive-c 2.9
matplotlib 2.2.5
mercurial 4.8.2
multidict 5.1.0
mypy 0.770
networkx 2.2
numpy 1.16.5
numpy 1.21.2
oauthlib 3.1.1
opt-einsum 3.3.0
pandas 0.24.2
pip 20.3.4
pip 21.2.4
pkginfo 1.7.1
protobuf 3.17.2
psutil 5.8.0
pyOpenSSL 20.0.1
pyasn1-modules 0.2.7
pyasn1 0.4.8
pycosat 0.6.3
pycparser 2.20
pygpu 0.7.6
pyparsing 2.4.7
pysam 0.16.0.1
python-dateutil 2.8.1
pytz 2020.1
pyu2f 0.1.5
requests-oauthlib 1.3.0
requests 2.26.0
rsa 4.7.2
ruamel-yaml-conda 0.15.100
scikit-image 0.14.5
scikit-learn 0.19.2
scipy 1.2.1
scipy 1.6.2
setuptools 44.0.0.post20200102
setuptools 52.0.0.post20210125
setuptools 58.0.4
singledispatch 0.0.0
six 1.16.0
sortedcontainers 2.4.0
soupsieve 2.0.1
subprocess32 3.5.4
tensorboard-data-server 0.6.0
tensorboard-plugin-wit 1.8.0
tensorboard 2.6.0
tensorflow-estimator 2.5.0
tensorflow 2.4.1
termcolor 1.1.0
tornado 5.1.1
tqdm 4.62.1
typing-extensions 3.10.0.0
urllib3 1.26.6
wheel 0.37.0
wrapt 1.12.1
wsgiref 0.1.2
yarl 1.6.3
zipp 3.5.0