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intelliseqngs/prodia_task_vcf-concat-beagle : 1.0.0
Ubuntu 18.04.6 LTS
Latest release: about 2 years ago - 14 downloads - 1,019 dependencies
JSONDependencies
- KernSmooth 2.23-18
- MASS 7.3-53.1
- Matrix 1.3-2
- R6 2.5.0
- RColorBrewer 1.1-2
- Rcpp 1.0.6
- assertthat 0.2.1
- backports 1.1.10
- base 3.6.2
- bitops 1.0-6
- brio 1.1.1
- caTools 1.18.1
- callr 3.5.1
- cli 2.3.0
- colorspace 2.0-0
- compiler 3.6.2
- crayon 1.4.1
- data.table 1.12.8
- datasets 3.6.2
- desc 1.2.0
- diffobj 0.3.3
- digest 0.6.27
- dplyr 0.8.5
- ellipsis 0.3.1
- evaluate 0.14
- fansi 0.4.2
- farver 2.0.3
- gdata 2.18.0
- getopt 1.20.3
- ggplot2 3.3.0
- glue 1.4.2
- gplots 3.0.3
- grDevices 3.6.2
- graphics 3.6.2
- grid 3.6.2
- gsalib 2.1
- gtable 0.3.0
- gtools 3.8.2
- isoband 0.2.3
- jsonlite 1.7.2
- labeling 0.4.2
- lattice 0.20-41
- lifecycle 1.0.0
- magrittr 2.0.1
- methods 3.6.2
- mgcv 1.8-34
- munsell 0.5.0
- nlme 3.1-150
- optparse 1.6.4
- parallel 3.6.2
- pillar 1.4.7
- pkgbuild 1.2.0
- pkgconfig 2.0.3
- pkgload 1.1.0
- plogr 0.2.0
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.4.5
- ps 1.5.0
- purrr 0.3.4
- rematch2 2.1.2
- rlang 0.4.10
- rprojroot 2.0.2
- rstudioapi 0.13
- scales 1.1.1
- splines 3.6.2
- stats4 3.6.2
- stats 3.6.2
- tcltk 3.6.2
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.0.2
- tibble 3.0.6
- tidyselect 1.1.0
- tools 3.6.2
- translations 3.6.2
- utf8 1.1.4
- utils 3.6.2
- vctrs 0.3.6
- viridisLite 0.3.0
- waldo 0.2.4
- withr 2.4.1
- zeallot 0.1.0
- ubuntu/adduser 3.116ubuntu1
- ubuntu/adwaita-icon-theme 3.28.0-1ubuntu1
- ubuntu/apt 1.6.14
- ubuntu/base-files 10.1ubuntu2.11
- ubuntu/base-passwd 3.5.44
- ubuntu/bash 4.4.18-2ubuntu1.3
- ubuntu/bc 1.07.1-2
- ubuntu/bedtools 2.26.0 dfsg-5
- ubuntu/binutils-common 2.30-21ubuntu1~18.04.7
- ubuntu/binutils-x86-64-linux-gnu 2.30-21ubuntu1~18.04.7
- ubuntu/binutils 2.30-21ubuntu1~18.04.7
- ubuntu/bsdutils 1:2.31.1-0.4ubuntu3.7
- ubuntu/build-essential 12.4ubuntu1
- ubuntu/bzip2-doc 1.0.6-8.1ubuntu0.2
- ubuntu/bzip2 1.0.6-8.1ubuntu0.2
- ubuntu/ca-certificates-java 20180516ubuntu1~18.04.1
- ubuntu/ca-certificates 20211016~18.04.1
- ubuntu/coreutils 8.28-1ubuntu1
- ubuntu/cpp-7 7.5.0-3ubuntu1~18.04
- ubuntu/cpp 4:7.4.0-1ubuntu2.3
- ubuntu/curl 7.58.0-2ubuntu3.21
- ubuntu/dash 0.5.8-2.10
- ubuntu/dbus 1.12.2-1ubuntu1.4
- ubuntu/debconf 1.5.66ubuntu1
- ubuntu/debianutils 4.8.4
- ubuntu/dh-python 3.20180325ubuntu2
- ubuntu/diffutils 1:3.6-1
- ubuntu/distro-info-data 0.37ubuntu0.15
- ubuntu/dpkg-dev 1.19.0.5ubuntu2.4
- ubuntu/dpkg 1.19.0.5ubuntu2.4
- ubuntu/e2fsprogs 1.44.1-1ubuntu1.4
- ubuntu/fdisk 2.31.1-0.4ubuntu3.7
- ubuntu/findutils 4.6.0 git 20170828-2
- ubuntu/fontconfig-config 2.12.6-0ubuntu2
- ubuntu/fontconfig 2.12.6-0ubuntu2
- ubuntu/fonts-dejavu-core 2.37-1
- ubuntu/g -7 7.5.0-3ubuntu1~18.04
- ubuntu/g 4:7.4.0-1ubuntu2.3
- ubuntu/gcc-7-base 7.5.0-3ubuntu1~18.04
- ubuntu/gcc-7 7.5.0-3ubuntu1~18.04
- ubuntu/gcc-8-base 8.4.0-1ubuntu1~18.04
- ubuntu/gcc 4:7.4.0-1ubuntu2.3
- ubuntu/gir1.2-glib-2.0 1.56.1-1
- ubuntu/google-cloud-sdk 409.0.0-0
- ubuntu/gpg-agent 2.2.4-1ubuntu1.6
- ubuntu/gpg 2.2.4-1ubuntu1.6
- ubuntu/gpgconf 2.2.4-1ubuntu1.6
- ubuntu/gpgv 2.2.4-1ubuntu1.6
- ubuntu/grep 3.1-2build1
- ubuntu/gtk-update-icon-cache 3.22.30-1ubuntu4
- ubuntu/gzip 1.6-5ubuntu1.2
- ubuntu/hicolor-icon-theme 0.17-2
- ubuntu/hostname 3.20
- ubuntu/humanity-icon-theme 0.6.15
- ubuntu/init-system-helpers 1.51
- ubuntu/iso-codes 3.79-1
- ubuntu/java-common 0.68ubuntu1~18.04.1
- ubuntu/jo 1.1-1
- ubuntu/jq 1.5 dfsg-2
- ubuntu/less 487-0.1
- ubuntu/libacl1 2.2.52-3build1
- ubuntu/libapparmor1 2.12-4ubuntu5.1
- ubuntu/libapt-inst2.0 1.6.14
- ubuntu/libapt-pkg5.0 1.6.14
- ubuntu/libasan4 7.5.0-3ubuntu1~18.04
- ubuntu/libasn1-8-heimdal 7.5.0 dfsg-1ubuntu0.1
- ubuntu/libasound2-data 1.1.3-5ubuntu0.6
- ubuntu/libasound2 1.1.3-5ubuntu0.6
- ubuntu/libassuan0 2.5.1-2
- ubuntu/libasyncns0 0.8-6
- ubuntu/libatk-bridge2.0-0 2.26.2-1
- ubuntu/libatk-wrapper-java-jni 0.33.3-20ubuntu0.1
- ubuntu/libatk-wrapper-java 0.33.3-20ubuntu0.1
- ubuntu/libatk1.0-0 2.28.1-1
- ubuntu/libatk1.0-data 2.28.1-1
- ubuntu/libatomic1 8.4.0-1ubuntu1~18.04
- ubuntu/libatspi2.0-0 2.28.0-1
- ubuntu/libattr1 1:2.4.47-2build1
- ubuntu/libaudit-common 1:2.8.2-1ubuntu1.1
- ubuntu/libaudit1 1:2.8.2-1ubuntu1.1
- ubuntu/libavahi-client3 0.7-3.1ubuntu1.3
- ubuntu/libavahi-common-data 0.7-3.1ubuntu1.3
- ubuntu/libavahi-common3 0.7-3.1ubuntu1.3
- ubuntu/libbinutils 2.30-21ubuntu1~18.04.7
- ubuntu/libblkid1 2.31.1-0.4ubuntu3.7
- ubuntu/libbsd0 0.8.7-1ubuntu0.1
- ubuntu/libbz2-1.0 1.0.6-8.1ubuntu0.2
- ubuntu/libbz2-dev 1.0.6-8.1ubuntu0.2
- ubuntu/libc-bin 2.27-3ubuntu1.6
- ubuntu/libc-dev-bin 2.27-3ubuntu1.6
- ubuntu/libc6-dev 2.27-3ubuntu1.6
- ubuntu/libc6 2.27-3ubuntu1.6
- ubuntu/libcairo2 1.15.10-2ubuntu0.1
- ubuntu/libcap-ng0 0.7.7-3.1
- ubuntu/libcc1-0 8.4.0-1ubuntu1~18.04
- ubuntu/libcilkrts5 7.5.0-3ubuntu1~18.04
- ubuntu/libcom-err2 1.44.1-1ubuntu1.4
- ubuntu/libcroco3 0.6.12-2
- ubuntu/libcups2 2.2.7-1ubuntu2.9
- ubuntu/libcurl3-gnutls 7.58.0-2ubuntu3.21
- ubuntu/libcurl4-openssl-dev 7.58.0-2ubuntu3.21
- ubuntu/libcurl4 7.58.0-2ubuntu3.21
- ubuntu/libdatrie1 0.2.10-7
- ubuntu/libdb5.3 5.3.28-13.1ubuntu1.1
- ubuntu/libdbus-1-3 1.12.2-1ubuntu1.4
- ubuntu/libdebconfclient0 0.213ubuntu1
- ubuntu/libdpkg-perl 1.19.0.5ubuntu2.4
- ubuntu/libdrm-amdgpu1 2.4.101-2~18.04.1
- ubuntu/libdrm-common 2.4.101-2~18.04.1
- ubuntu/libdrm-intel1 2.4.101-2~18.04.1
- ubuntu/libdrm-nouveau2 2.4.101-2~18.04.1
- ubuntu/libdrm-radeon1 2.4.101-2~18.04.1
- ubuntu/libdrm2 2.4.101-2~18.04.1
- ubuntu/libedit2 3.1-20170329-1
- ubuntu/libelf1 0.170-0.4ubuntu0.1
- ubuntu/libexpat1-dev 2.2.5-3ubuntu0.7
- ubuntu/libexpat1 2.2.5-3ubuntu0.7
- ubuntu/libext2fs2 1.44.1-1ubuntu1.4
- ubuntu/libfdisk1 2.31.1-0.4ubuntu3.7
- ubuntu/libffi6 3.2.1-8
- ubuntu/libflac8 1.3.2-1
- ubuntu/libfontconfig1 2.12.6-0ubuntu2
- ubuntu/libfontenc1 1:1.1.3-1
- ubuntu/libfreetype6 2.8.1-2ubuntu2.2
- ubuntu/libgcc-7-dev 7.5.0-3ubuntu1~18.04
- ubuntu/libgcc1 1:8.4.0-1ubuntu1~18.04
- ubuntu/libgcrypt20 1.8.1-4ubuntu1.3
- ubuntu/libgdbm-compat4 1.14.1-6
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- ubuntu/libjpeg8 8c-2ubuntu8
- ubuntu/libjq1 1.5 dfsg-2
- ubuntu/libk5crypto3 1.16-2ubuntu0.2
- ubuntu/libkeyutils1 1.5.9-9.2ubuntu2.1
- ubuntu/libkrb5-26-heimdal 7.5.0 dfsg-1ubuntu0.1
- ubuntu/libkrb5-3 1.16-2ubuntu0.2
- ubuntu/libkrb5support0 1.16-2ubuntu0.2
- ubuntu/liblcms2-2 2.9-1ubuntu0.1
- ubuntu/libldap-2.4-2 2.4.45 dfsg-1ubuntu1.11
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- ubuntu/libllvm10 1:10.0.0-4ubuntu1~18.04.2
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- ubuntu/liblsan0 8.4.0-1ubuntu1~18.04
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- US_export_policy:US_export_policy *
- args4j:args4j 2.33
- charsets:charsets *
- cldrdata:cldrdata *
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- com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
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- com.github.stephenc.jcip:jcip-annotations 1.0-1
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- com.google.api-client:google-api-client 1.30.10
- com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 1.5.1
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- com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.105.1
- com.google.api.grpc:proto-google-common-protos 1.18.0
- com.google.apis:google-api-services-bigquery v2-rev20200818-1.30.10
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- com.google.apis:google-api-services-storage v1-rev20190910-1.30.3
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- com.google.auth:google-auth-library-oauth2-http 0.18.0
- com.google.auto.value:auto-value-annotations 1.6.6
- com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
- com.google.cloud.bigdataoss:gcsio 1.9.4
- com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
- com.google.cloud.bigdataoss:util 1.9.4
- com.google.cloud:google-cloud-bigquery 1.117.1
- com.google.cloud:google-cloud-bigquerystorage 1.5.1
- com.google.cloud:google-cloud-core-http 1.91.3
- com.google.cloud:google-cloud-core 1.91.3
- com.google.cloud:google-cloud-nio 0.117.0-alpha
- com.google.cloud:google-cloud-storage 1.99.0
- com.google.code.findbugs:jsr305 3.0.2
- com.google.code.gson:gson 2.8.6
- com.google.errorprone:error_prone_annotations 2.3.3
- com.google.guava:failureaccess 1.0.1
- com.google.guava:guava 15.0
- com.google.guava:guava 27.1-jre
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
- com.google.http-client:google-http-client-appengine 1.32.1
- com.google.http-client:google-http-client-jackson2 1.36.0
- com.google.http-client:google-http-client 1.36.0
- com.google.j2objc:j2objc-annotations 1.3
- com.google.oauth-client:google-oauth-client 1.31.0
- com.google.protobuf:protobuf-java-util 3.10.0
- com.google.protobuf:protobuf-java 3.10.0
- com.google.re2j:re2j 1.1
- com.googlecode.json-simple:json-simple 1.1.1
- com.googlecode.protobuf-java-format:protobuf-java-format 1.2
- com.nimbusds:nimbus-jose-jwt 4.41.1
- com.ning:compress-lzf 1.0.3
- com.opencsv:opencsv 3.4
- com.squareup.okhttp:okhttp 2.7.5
- com.squareup.okio:okio 1.6.0
- com.sun.jersey.contribs:jersey-guice 1.19
- com.sun.jersey:jersey-client 1.19
- com.sun.jersey:jersey-core 1.19
- com.sun.jersey:jersey-json 1.19
- com.sun.jersey:jersey-server 1.19
- com.sun.jersey:jersey-servlet 1.19
- com.sun:jce 1.8.0_342
- com.sun:sunec 1.8.0_342
- com.sun:sunjce_provider 1.8.0_342
- com.sun:sunpkcs11 1.8.0_342
- com.thoughtworks.paranamer:paranamer 2.8
- com.univocity:univocity-parsers 2.7.3
- com.vlkan:flatbuffers 1.2.0-3f79e055
- commons-beanutils:commons-beanutils 1.9.3
- commons-cli:commons-cli 1.2
- commons-codec:commons-codec 1.11
- commons-collections:commons-collections 3.2.2
- commons-io:commons-io 2.4
- commons-io:commons-io 2.6
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- commons-logging:commons-logging 1.2
- commons-net:commons-net 3.6
- commons-pool:commons-pool 1.6
- de.javakaffee:kryo-serializers 0.42
- dnsjava:dnsjava 2.1.7
- dnsns:dnsns *
- dt:dt *
- gov.nist.math.jama:gov.nist.math.jama 1.1.1
- icedtea-sound:icedtea-sound *
- io.airlift:aircompressor 0.10
- io.dropwizard.metrics:metrics-core 3.1.5
- io.dropwizard.metrics:metrics-graphite 3.1.5
- io.dropwizard.metrics:metrics-json 3.1.5
- io.dropwizard.metrics:metrics-jvm 3.1.5
- io.netty:netty-all 4.1.42.Final
- io.netty:netty-buffer 4.1.48.Final
- io.netty:netty-codec-http2 4.1.48.Final
- io.netty:netty-codec-http 4.1.48.Final
- io.netty:netty-codec-socks 4.1.48.Final
- io.netty:netty-codec 4.1.48.Final
- io.netty:netty-common 4.1.48.Final
- io.netty:netty-handler-proxy 4.1.48.Final
- io.netty:netty-handler 4.1.48.Final
- io.netty:netty-resolver 4.1.48.Final
- io.netty:netty-tcnative-boringssl-static 2.0.30.Final
- io.netty:netty-transport-native-epoll 4.1.48.Final
- io.netty:netty-transport-native-unix-common 4.1.48.Final
- io.netty:netty-transport 4.1.48.Final
- io.netty:netty 3.10.6.Final
- jaccess:jaccess *
- jarhdf5:jarhdf5 2.11.0
- javax.annotation:javax.annotation-api 1.3.2
- javax.servlet:javax.servlet-api 3.1.0
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- javax.ws.rs:javax.ws.rs-api 2.0.1
- javax.ws.rs:jsr311-api 1.1.1
- javax.xml.bind:jaxb-api 2.2.11
- jconsole:jconsole *
- jfr:jfr 1.8.0_342
- jline:jline 0.9.94
- joda-time:joda-time 2.9.9
- jsse:jsse 1.8.0_342
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.17
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_342-8u342-b07-0ubuntu1~18.04-b07
- net.grey-panther:natural-comparator 1.1
- net.minidev:accessors-smart 1.2
- net.minidev:json-smart 2.3
- net.razorvine:pyrolite 4.13
- net.sf.jopt-simple:jopt-simple 5.0.3
- net.sf.opencsv:opencsv 2.3
- net.sf.py4j:py4j 0.10.7
- org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
- org.aeonbits.owner:owner 1.0.9
- org.antlr:antlr4-runtime 4.7
- org.apache.arrow:arrow-format 0.10.0
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- org.apache.commons:commons-collections4 4.3
- org.apache.commons:commons-compress 1.19
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- org.apache.commons:commons-math3 3.5
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- org.apache.hadoop:hadoop-auth 3.2.1
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- org.apache.hadoop:hadoop-hdfs-client 3.2.1
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- org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
- org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
- org.apache.hadoop:hadoop-yarn-api 3.2.1
- org.apache.hadoop:hadoop-yarn-client 3.2.1
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- org.apache.hive:hive-storage-api 2.6.0
- org.apache.htrace:htrace-core4 4.1.0-incubating
- org.apache.httpcomponents:httpclient 4.5.10
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- org.apache.kerby:kerb-admin 1.0.1
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- org.apache.kerby:kerb-core 1.0.1
- org.apache.kerby:kerb-crypto 1.0.1
- org.apache.kerby:kerb-identity 1.0.1
- org.apache.kerby:kerb-server 1.0.1
- org.apache.kerby:kerb-simplekdc 1.0.1
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- org.apache.kerby:kerby-asn1 1.0.1
- org.apache.kerby:kerby-config 1.0.1
- org.apache.kerby:kerby-pkix 1.0.1
- org.apache.kerby:kerby-util 1.0.1
- org.apache.kerby:kerby-xdr 1.0.1
- org.apache.kerby:token-provider 1.0.1
- org.apache.logging.log4j:log4j-api 2.5
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- org.apache.maven.scm:maven-scm-api 1.4
- org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
- org.apache.maven.scm:maven-scm-provider-svnexe 1.4
- org.apache.orc:orc-core 1.5.5
- org.apache.orc:orc-mapreduce 1.5.5
- org.apache.orc:orc-shims 1.5.5
- org.apache.parquet:parquet-avro 1.10.1
- org.apache.parquet:parquet-column 1.10.1
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- org.apache.parquet:parquet-format 2.4.0
- org.apache.parquet:parquet-hadoop 1.10.1
- org.apache.parquet:parquet-jackson 1.10.1
- org.apache.spark:spark-catalyst_2.11 2.4.5
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- org.apache.spark:spark-graphx_2.11 2.4.5
- org.apache.spark:spark-kvstore_2.11 2.4.5
- org.apache.spark:spark-launcher_2.11 2.4.5
- org.apache.spark:spark-mllib-local_2.11 2.4.5
- org.apache.spark:spark-mllib_2.11 2.4.5
- org.apache.spark:spark-network-common_2.11 2.4.5
- org.apache.spark:spark-network-shuffle_2.11 2.4.5
- org.apache.spark:spark-sketch_2.11 2.4.5
- org.apache.spark:spark-sql_2.11 2.4.5
- org.apache.spark:spark-streaming_2.11 2.4.5
- org.apache.spark:spark-tags_2.11 2.4.5
- org.apache.spark:spark-unsafe_2.11 2.4.5
- org.apache.xbean:xbean-asm-util 4.8
- org.apache.xbean:xbean-asm6-shaded 4.8
- org.apache.yetus:audience-annotations 0.5.0
- org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
- org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
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- org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
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- org.broadinstitute.hellbender.Main:gatk-package 4.2.0.0-local
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- org.codehaus.janino:commons-compiler 3.0.9
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- org.codehaus.mojo:animal-sniffer-annotations 1.18
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- org.codehaus.woodstox:stax2-api 3.1.4
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.disq-bio:disq 0.3.6
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