Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : gsalib

Explore the latest package usage data for gsalib in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 81
Total downloads: 33,950,863

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.5.0.0

Official release repository for GATK versions 4.x

  • version: 2.1
Latest release: 11 months ago - 31,988,536 downloads - 912 dependencies
broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

  • version: 2.1
Latest release: over 6 years ago - 1,387,112 downloads - 498 dependencies
broadinstitute/viral-core latest

  • version: 2.1
Latest release: over 4 years ago - 151,955 downloads - 419 dependencies
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 2.1
Latest release: 10 months ago - 86,066 downloads - 912 dependencies
nfcore/eager 2.5.0

A Docker image for the nf-core/eager pipeline.

  • version: 2.1
Latest release: about 1 year ago - 40,624 downloads - 738 dependencies
broadinstitute/viral-ngs latest

See: https://viral-ngs.readthedocs.io/en/latest/

  • version: 2.1
Latest release: over 4 years ago - 24,573 downloads - 417 dependencies
dhspence/docker-walker latest

Haley's GATK

  • version: 2.2
Latest release: over 5 years ago - 7,359 downloads - 541 dependencies
broadinstitute/viral-assemble latest

  • version: 2.1
Latest release: over 4 years ago - 4,464 downloads - 431 dependencies
broadinstitute/viral-phylo 2.0.21.5

  • version: 2.1
Latest release: over 4 years ago - 4,426 downloads - 431 dependencies
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

  • version: 2.1
Latest release: over 4 years ago - 38,602 downloads - 842 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 2.1
Latest release: over 1 year ago - 30,911 downloads - 1,038 dependencies
intelliseqngs/task_bam-filter-mismatch 1.4.1

  • version: 2.1
Latest release: over 1 year ago - 21,820 downloads - 1,138 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 2.1
Latest release: almost 3 years ago - 12,626 downloads - 948 dependencies
intelliseqngs/gatk-4.1.7.0 1.0.4

  • version: 2.1
Latest release: over 4 years ago - 10,089 downloads - 1,006 dependencies
intelliseqngs/task_bam-metrics 1.2.8

  • version: 2.1
Latest release: about 4 years ago - 7,556 downloads - 1,007 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 2.1
Latest release: over 1 year ago - 5,097 downloads - 1,140 dependencies
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

  • version: 2.1
Latest release: over 4 years ago - 4,290 downloads - 842 dependencies
intelliseqngs/gatk-4.1.6.0 2.0.2

  • version: 2.1
Latest release: over 4 years ago - 3,337 downloads - 842 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 2,784 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 2.1
Latest release: over 1 year ago - 2,314 downloads - 1,040 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 2.1
Latest release: over 3 years ago - 2,311 downloads - 957 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 2.1
Latest release: over 1 year ago - 2,566 downloads - 1,043 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.0.0

  • version: 2.1
Latest release: about 1 year ago - 2,498 downloads - 346 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 2,028 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 1,949 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 1,947 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 2.1
Latest release: about 3 years ago - 1,698 downloads - 957 dependencies
intelliseqngs/task_vcf-prepare 1.0.3

  • version: 2.1
Latest release: over 1 year ago - 914 downloads - 1,038 dependencies
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

  • version: 2.1
Latest release: over 4 years ago - 640 downloads - 842 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 2.1
Latest release: almost 3 years ago - 614 downloads - 946 dependencies
biocontainers/gatk v3.4_cv1

  • version: 2.2
Latest release: over 6 years ago - 896 downloads - 1,201 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 2.1
Latest release: almost 3 years ago - 362 downloads - 946 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 2.1
Latest release: over 1 year ago - 364 downloads - 1,041 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 312 downloads - 1,038 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 2.1
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 2.1
Latest release: over 1 year ago - 308 downloads - 1,040 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 304 downloads - 1,142 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 2.1
Latest release: over 1 year ago - 281 downloads - 1,038 dependencies
trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

  • version: 2.1
Latest release: about 4 years ago - 212 downloads - 965 dependencies
intelliseqngs/astrolabe 1.0.0

  • version: 2.1
Latest release: about 4 years ago - 188 downloads - 1,097 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 2.1
Latest release: over 1 year ago - 184 downloads - 1,047 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 2.1
Latest release: about 3 years ago - 165 downloads - 1,057 dependencies
intelliseqngs/collect-hs-metrics 1.0.0

  • version: 2.1
Latest release: over 4 years ago - 131 downloads - 928 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 2.1
Latest release: almost 2 years ago - 161 downloads - 1,118 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 2.1
Latest release: about 1 year ago - 300 downloads - 1,059 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 2.1
Latest release: over 1 year ago - 79 downloads - 1,144 dependencies
jlund256/xeno_rna-seq latest

  • version: 2.1
Latest release: almost 2 years ago - 1,351 downloads - 902 dependencies
nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

  • version: 2.1
Latest release: about 5 years ago - 44 downloads - 869 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 2.1
Latest release: over 2 years ago - 31 downloads - 964 dependencies
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

  • version: 2.1
Latest release: over 4 years ago - 23 downloads - 844 dependencies
intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

  • version: 2.1
Latest release: over 1 year ago - 26 downloads - 1,038 dependencies
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

  • version: 2.1
Latest release: almost 2 years ago - 25 downloads - 1,014 dependencies
mrkevindc/varscan latest

  • version: 2.1
Latest release: almost 2 years ago - 66 downloads - 924 dependencies
mrkevindc/mutect2 latest

  • version: 2.1
Latest release: almost 2 years ago - 36 downloads - 912 dependencies
intelliseqngs/gatk_4.1.6.0 1.1.0

  • version: 2.1
Latest release: over 4 years ago - 13 downloads - 842 dependencies
intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

  • version: 2.1
Latest release: about 2 years ago - 14 downloads - 1,019 dependencies
broadinstitute/viral-classify 2.0.21.3

  • version: 2.1
Latest release: over 4 years ago - 12 downloads - 423 dependencies
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

  • version: 2.1
Latest release: over 3 years ago - 11 downloads - 677 dependencies
intelliseqngs/gatk-4.3.0.0 1.0.0

  • version: 2.1
Latest release: over 1 year ago - 1,269 downloads - 1,038 dependencies
yiluxiangbei/pumpkin-gatk-notebook 1.0

  • version: 2.1
Latest release: about 3 years ago - 10 downloads - 1,570 dependencies
intelliseqngs/broad-institute-hg38 1.0.0

  • version: 2.1
Latest release: over 4 years ago - 10 downloads - 930 dependencies
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

  • version: 2.1
Latest release: over 4 years ago - 10 downloads - 437 dependencies
yiluxiangbei/pumpkin-gatk 1.0

  • version: 2.1
Latest release: about 3 years ago - 9 downloads - 587 dependencies
intelliseqngs/gatk-4.1.9.0-grch38-no-alt 1.0.0

  • version: 2.1
Latest release: almost 4 years ago - 9 downloads - 677 dependencies
p4rkerw/vartrix 1.0

  • version: 2.1
Latest release: over 1 year ago - 11 downloads - 1,020 dependencies
philiplin1212/gatk latest

  • version: 2.1
Latest release: over 1 year ago - 8 downloads - 1,137 dependencies
wangyanmin/fastseq-pipline latest

  • version: 2.1
Latest release: over 1 year ago - 9 downloads - 813 dependencies
mjohnsonngi/wxsjointcaller 2.0

  • version: 2.1
Latest release: almost 2 years ago - 66,591 downloads - 575 dependencies
mjohnsonngi/wxsutility 2.0

  • version: 2.1
Latest release: over 1 year ago - 9,288 downloads - 611 dependencies
hankmercer/exomecmpt 2.0

  • version: 2.1
Latest release: almost 2 years ago - 2,566 downloads - 580 dependencies
intelliseqngs/gatk-4.3.0.0-hg38 1.0.0

  • version: 2.1
Latest release: over 1 year ago - 1,990 downloads - 1,038 dependencies
mjohnsonngi/wxsjointasqc 2.0

  • version: 2.1
Latest release: almost 2 years ago - 12,994 downloads - 539 dependencies
intelliseqngs/gatk-4.3.0.0-grch38-no-alt 1.0.0

  • version: 2.1
Latest release: over 1 year ago - 760 downloads - 1,038 dependencies
mjohnsonngi/wxsjointsorter 2.0

  • version: 2.1
Latest release: almost 2 years ago - 123 downloads - 509 dependencies
gru4/scan2workinghg38 latest

  • version: 2.2.1
Latest release: over 1 year ago - 59 downloads - 776 dependencies
gru4/scan2fixedhg38 latest

  • version: 2.2.1
Latest release: over 1 year ago - 55 downloads - 777 dependencies
dabbleofdevops/nextneopi 20230817

  • version: 2.1
Latest release: about 1 year ago - 47 downloads - 499 dependencies
zjnolen/angsd-snakemake-pipeline 0.1

  • version: 2.2.1
Latest release: over 1 year ago - 22 downloads - 643 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 2.1
Latest release: over 1 year ago - 12,163 downloads - 839 dependencies
arnstrm2/gatk 4.4.0

  • version: 2.1
Latest release: about 1 year ago - 24 downloads - 1,044 dependencies
elle72/testthis2 vs1

  • version: 2.1
Latest release: about 1 year ago - 14 downloads - 838 dependencies