intelliseqngs/bcl-to-fq 1.0.2

intelliseqngs/task_bam-metrics-hg38 1.0.2

broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

intelliseqngs/gatk-4.2.4.1 1.0.1

rahulg603/gatk_samtools_docker latest

intelliseqngs/collect-hs-metrics 1.0.0

mjohnsonngi/wxsjointsorter 2.0

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

gru4/scan2workinghg38 latest

gru4/scan2fixedhg38 latest

intelliseqngs/gatk-4.1.9.0-hg38 1.0.0

yiluxiangbei/pumpkin-gatk-notebook 1.0

mjohnsonngi/wxsjointcaller 2.0

intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0

dabbleofdevops/nextneopi 20230817

intelliseqngs/pharmcat-resources 1.1.0

intelliseqngs/broad-institute-hg38 1.0.0

intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

zjnolen/angsd-snakemake-pipeline 0.1

intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3

intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

arnstrm2/gatk 4.4.0

nfcore/eager 2.5.3

A Docker image for the nf-core/eager pipeline.

intelliseqngs/gatk-4.1.7.0-hg38 1.0.1

philiplin1212/gatk latest

elle72/testthis2 vs1

intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1

intelliseqngs/task_bam-bsqr 1.2.2

intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

broadinstitute/viral-ngs 1.25.0

See: https://viral-ngs.readthedocs.io/en/latest/

intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

intelliseqngs/gatk-4.1.7.0 1.0.4

mjohnsonngi/wxsutility 2.0

intelliseqngs/task_bam-metrics 1.2.8

dhspence/docker-walker latest

Haley's GATK

intelliseqngs/gatk_4.1.6.0 1.1.0

broadinstitute/viral-assemble latest

broadinstitute/viral-phylo 2.0.21.5

intelliseqngs/gatk-4.1.6.0-hg38 1.1.0

intelliseqngs/gatk-4.1.6.0 2.0.2

intelliseqngs/task_mt-varcall-mutect2 1.1.2

intelliseqngs/task_vcf-concat 1.0.4

hankmercer/exomecmpt 2.0

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

intelliseqngs/gatk-4.2.0.0 1.0.0

intelliseqngs/task_mt-realign 1.1.2

intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

intelliseqngs/task_bam-gatk-m2 1.1.2

intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

intelliseqngs/task_bam-filter-mismatch 1.5.0

intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

intelliseqngs/task_vcf-anno-cosmic 2.1.6

nbutter/gatk_tools latest

GATK and other bioinformatics tools packaged together.

intelliseqngs/resources longranger_v0.1

intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

mrkevindc/varscan latest

intelliseqngs/task_vcf-prepare 1.0.5

intelliseqngs/gatk-4.3.0.0-hg38 1.0.0

mrkevindc/mutect2 latest

intelliseqngs/resources-pgx-polygenic 1.2.4

biocontainers/gatk v3.4_cv1

wangyanmin/fastseq-pipline latest

jlund256/xeno_rna-seq 1.0.1

yiluxiangbei/pumpkin-gatk 1.0

intelliseqngs/gatk-4.1.9.0-grch38-no-alt 1.0.0

p4rkerw/vartrix 1.0

broadinstitute/gatk3 3.8-1

Official release repository for GATK versions 3.x

broadinstitute/viral-core 2.0.21

intelliseqngs/gatk-4.3.0.0 1.0.0

intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

mjohnsonngi/wxsjointasqc 2.0

intelliseqngs/gatk-4.3.0.0-grch38-no-alt 1.1.0

intelliseqngs/task_vcf-concat-beagle 1.1.3

intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

intelliseqngs/task_pileup-merge 1.0.2

trust1/gatk version0.4.1

Variant Calling Pipeline based on GATK image

broadinstitute/viral-classify 2.0.21.3

intelliseqngs/astrolabe 1.0.0