Ecosyste.ms: Docker
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Package Usage : cran : gsalib
Explore the latest package usage data for gsalib in the cran ecosystem, including detailed information on package dependencies and their usage.
Total dependents: 81
Total downloads: 33,950,863
More details on packages.ecosyste.ms - JSON
broadinstitute/gatk 4.5.0.0
Official release repository for GATK versions 4.x
- version: 2.1
broadinstitute/gatk3 3.8-1
Official release repository for GATK versions 3.x
- version: 2.1
broadinstitute/viral-core latest
- version: 2.1
broadinstitute/gatk-nightly 2024-01-06-4.5.0.0-3-gb68fadc5f-NIGHTLY-SNAPSHOT
Official repository for nightly development builds of the GATK
- version: 2.1
nfcore/eager 2.5.0
A Docker image for the nf-core/eager pipeline.
- version: 2.1
broadinstitute/viral-ngs latest
See: https://viral-ngs.readthedocs.io/en/latest/
- version: 2.1
dhspence/docker-walker latest
Haley's GATK
- version: 2.2
broadinstitute/viral-assemble latest
- version: 2.1
broadinstitute/viral-phylo 2.0.21.5
- version: 2.1
intelliseqngs/gatk-4.1.7.0-hg38 1.0.1
- version: 2.1
intelliseqngs/task_bam-bsqr 1.2.2
- version: 2.1
intelliseqngs/task_bam-filter-mismatch 1.4.1
- version: 2.1
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest
- version: 2.1
intelliseqngs/gatk-4.1.7.0 1.0.4
- version: 2.1
intelliseqngs/task_bam-metrics 1.2.8
- version: 2.1
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2
- version: 2.1
intelliseqngs/gatk-4.1.6.0-hg38 1.1.0
- version: 2.1
intelliseqngs/gatk-4.1.6.0 2.0.2
- version: 2.1
intelliseqngs/task_mt-varcall-mutect2 1.1.2
- version: 2.1
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest
- version: 2.1
intelliseqngs/gatk-4.2.0.0 1.0.0
- version: 2.1
intelliseqngs/task_vcf-concat 1.0.4
- version: 2.1
intelliseqngs/task_vcf-anno-cosmic 2.0.0
- version: 2.1
intelliseqngs/task_mt-realign 1.1.2
- version: 2.1
intelliseqngs/task_bam-gatk-m2 1.1.2
- version: 2.1
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2
- version: 2.1
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0
- version: 2.1
intelliseqngs/task_vcf-prepare 1.0.3
- version: 2.1
intelliseqngs/gatk-4.1.7.0-grch38-no-alt 1.0.1
- version: 2.1
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0
- version: 2.1
biocontainers/gatk v3.4_cv1
- version: 2.2
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0
- version: 2.1
intelliseqngs/task_vcf-concat-beagle 1.1.3
- version: 2.1
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2
- version: 2.1
intelliseqngs/resources longranger_v0.1
- version: 2.1
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest
- version: 2.1
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2
- version: 2.1
intelliseqngs/task_pileup-merge 1.0.2
- version: 2.1
trust1/gatk version0.4.1
Variant Calling Pipeline based on GATK image
- version: 2.1
intelliseqngs/astrolabe 1.0.0
- version: 2.1
intelliseqngs/bcl-to-fq 1.0.2
- version: 2.1
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0
- version: 2.1
intelliseqngs/collect-hs-metrics 1.0.0
- version: 2.1
intelliseqngs/gatk-4.2.4.1 1.0.1
- version: 2.1
intelliseqngs/resources-pgx-polygenic 1.2.4
- version: 2.1
intelliseqngs/task_bam-metrics-hg38 1.0.2
- version: 2.1
jlund256/xeno_rna-seq latest
- version: 2.1
nbutter/gatk_tools latest
GATK and other bioinformatics tools packaged together.
- version: 2.1
intelliseqngs/pharmcat-resources 1.1.0
- version: 2.1
intelliseqngs/task_gvcf-genotype-by-vcf 0.0.3
- version: 2.1
intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2
- version: 2.1
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1
- version: 2.1
mrkevindc/varscan latest
- version: 2.1
mrkevindc/mutect2 latest
- version: 2.1
intelliseqngs/gatk_4.1.6.0 1.1.0
- version: 2.1
intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0
- version: 2.1
broadinstitute/viral-classify 2.0.21.3
- version: 2.1
intelliseqngs/gatk-4.1.9.0-hg38 1.0.0
- version: 2.1
intelliseqngs/gatk-4.3.0.0 1.0.0
- version: 2.1
yiluxiangbei/pumpkin-gatk-notebook 1.0
- version: 2.1
intelliseqngs/broad-institute-hg38 1.0.0
- version: 2.1
intelliseqngs/gatk-4.1.6.0-grch38-no-alt 1.0.0
- version: 2.1
yiluxiangbei/pumpkin-gatk 1.0
- version: 2.1
intelliseqngs/gatk-4.1.9.0-grch38-no-alt 1.0.0
- version: 2.1
p4rkerw/vartrix 1.0
- version: 2.1
philiplin1212/gatk latest
- version: 2.1
wangyanmin/fastseq-pipline latest
- version: 2.1
mjohnsonngi/wxsjointcaller 2.0
- version: 2.1
mjohnsonngi/wxsutility 2.0
- version: 2.1
hankmercer/exomecmpt 2.0
- version: 2.1
intelliseqngs/gatk-4.3.0.0-hg38 1.0.0
- version: 2.1
mjohnsonngi/wxsjointasqc 2.0
- version: 2.1
intelliseqngs/gatk-4.3.0.0-grch38-no-alt 1.0.0
- version: 2.1
mjohnsonngi/wxsjointsorter 2.0
- version: 2.1
gru4/scan2workinghg38 latest
- version: 2.2.1
gru4/scan2fixedhg38 latest
- version: 2.2.1
dabbleofdevops/nextneopi 20230817
- version: 2.1
zjnolen/angsd-snakemake-pipeline 0.1
- version: 2.2.1
rahulg603/gatk_samtools_docker latest
- version: 2.1
arnstrm2/gatk 4.4.0
- version: 2.1
elle72/testthis2 vs1
- version: 2.1