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Package Usage : deb : ubuntu/libhts2

Explore the latest package usage data for ubuntu/libhts2 in the deb ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 76
Total downloads: 32,376,656
Showing first 100 dependents

More details on packages.ecosyste.ms - JSON

broadinstitute/gatk 4.6.2.0

Official release repository for GATK versions 4.x

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: 12 months ago - 40,749,690 downloads - 513 dependencies
intelliseqngs/bcl-to-fq 1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 205 downloads - 1,047 dependencies
dmiller15/gatk 4.1.7.0R0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 6 years ago - 95 downloads - 866 dependencies
intelliseqngs/task_bam-metrics-hg38 1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 130 downloads - 1,144 dependencies
broadinstitute/gatk-nightly 2024-08-17-4.6.0.0-10-g9f2fbb553-NIGHTLY-SNAPSHOT

Official repository for nightly development builds of the GATK

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 1 year ago - 186,109 downloads - 912 dependencies
intelliseqngs/gatk-4.1.9.0 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 5 years ago - 2,229 downloads - 967 dependencies
intelliseqngs/task_bed-to-interval-list 1.1.5

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 1,113 downloads - 1,057 dependencies
biocontainers/mitohifi 3.0.0_cv1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 3,740 downloads - 559 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 403 downloads - 849 dependencies
edg1983/megalodon v2.5.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 45 downloads - 305 dependencies
qdidiscoveryservices/gatk-v2461_bwa_aws_vardict latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 131 downloads - 1,081 dependencies
intelliseqngs/gatk-4.2.0.0-hg38 1.1.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 197 downloads - 1,057 dependencies
intelliseqngs/gatk-4.2.4.1 1.0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 206 downloads - 1,118 dependencies
intelliseqngs/resources-pgx-polygenic 1.2.4

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 525 downloads - 1,059 dependencies
rahulg603/gatk_samtools_docker latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 17,088 downloads - 839 dependencies
intelliseqngs/task_calibrate-dragstr-model-grch38-no-alt 1.0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 116 downloads - 1,049 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 5 years ago - 188 downloads - 805 dependencies
man4ish/demuxlet_v3 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 86 downloads - 618 dependencies
uefbic/hap.py v3.15

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 37 downloads - 561 dependencies
qdidiscoveryservices/gatk-v2461_bwa_vardict latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 15 downloads - 1,069 dependencies
jcbn/dest_v2.5 latest

Updated version of the DEST pipeline

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 85 downloads - 633 dependencies
intelliseqngs/pharmcat-resources 1.1.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 4 years ago - 81 downloads - 964 dependencies
gene110/vep_filter v07

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 10 downloads - 1,164 dependencies
xiang2019/star v2.7.11a

STAR

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 2 years ago - 20 downloads - 231 dependencies
chloetu/ig_aligners latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 39 downloads - 616 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 180 downloads - 1,036 dependencies
nfcore/cellranger_clean 3.0.2.9002

Mirror of universc Single cell tooling - cellranger_clean

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 22 downloads - 1,995 dependencies
intelliseqngs/prodia_gatk-4.2.0.0 1.0.1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 126 downloads - 1,014 dependencies
intelliseqngs/task_vcf-varcall-metrics-grch38-no-alt 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 78 downloads - 1,038 dependencies
alexdhill/complete-seq time

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 2 years ago - 1,859 downloads - 584 dependencies
steepale/ataqv 1.3.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 16 downloads - 488 dependencies
polarisastrum/dx-cwic-project-g5jq9yq4b1q3kp4v2zqzvkkp_user-polarisastrum latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 74 downloads - 620 dependencies
arnstrm2/gatk 4.4.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 136 downloads - 1,044 dependencies
flexxoble/temp2_sambamba v02

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 199 downloads - 545 dependencies
jdwiyanto/biobakery4 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 29 downloads - 832 dependencies
elle72/testthis2 vs1

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 27 downloads - 838 dependencies
intelliseqngs/task_bam-bsqr 1.2.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 32,000 downloads - 1,038 dependencies
intelliseqngs/prodia_task_vcf-concat-beagle 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 30 downloads - 1,019 dependencies
intelliseqngs/gatk dbsnp-genotyping_grch38-no-alt-analysis-set_1.0.4-chrY-and-the-rest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 4 years ago - 13,881 downloads - 948 dependencies
broadinstitute/gatk-dev NVSCOREVARIANTS-PREVIEW-SNAPSHOT

GATK Development

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 7,434 downloads - 752 dependencies
intelliseqngs/task_mt-varcall-mutect2 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 3,100 downloads - 1,038 dependencies
intelliseqngs/task_vcf-concat 1.0.4

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 4,077 downloads - 1,043 dependencies
intelliseqngs/gatk-4.2.0.0 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 5 years ago - 2,321 downloads - 957 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-grch38-no-alt 1.0.2-chrY-and-the-rest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 3,213 downloads - 1,040 dependencies
broadinstitute/terra-jupyter-gatk 0.0.13

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 6 years ago - 2,485 downloads - 3,913 dependencies
intelliseqngs/task_mt-realign 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 2,167 downloads - 1,038 dependencies
intelliseqngs/task_bam-gatk-m2 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 2,265 downloads - 1,038 dependencies
intelliseqngs/task_vcf-varcall-metrics-hg38 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 2,154 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.0.0-grch38-no-alt 1.1.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 4 years ago - 1,750 downloads - 957 dependencies
melsiddieg/hap.py 3.15

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 14 downloads - 623 dependencies
intelliseqngs/task_bam-filter-mismatch 1.5.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: 11 months ago - 22,598 downloads - 1,138 dependencies
intelliseqngs/task_bam-metrics-grch38-no-alt 1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 5,190 downloads - 1,140 dependencies
intelliseqngs/task_vcf-anno-cosmic 2.1.6

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 2,782 downloads - 346 dependencies
genomehubs/mitohifi latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 157 downloads - 670 dependencies
intelliseqngs/task_vcf-vqsr-indel-recalib-hg38 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 352 downloads - 1,142 dependencies
ctomlins/hicpro latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 7 years ago - 67 downloads - 690 dependencies
mrkevindc/varscan latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 131 downloads - 924 dependencies
intelliseqngs/gatk-4.3.0.0-hg38 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 2,795 downloads - 1,038 dependencies
intelliseqngs/task_vcf-prepare 2.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: 28 days ago - 1,934 downloads - 1,038 dependencies
mrkevindc/mutect2 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 56 downloads - 912 dependencies
vanessa/molecular-design-parsl latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 35 downloads - 1,385 dependencies
ljanin/qsub-to-basespace 4.2.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 893 downloads - 1,228 dependencies
p4rkerw/vartrix 1.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: almost 3 years ago - 58 downloads - 1,020 dependencies
justinzhang1997/hap.py 20230913

A GRCh38.fa is packaged into this image along with the corrsponding .fai file. "HGREF" env is set.

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 15 downloads - 567 dependencies
jcbn/dest_freeze2.6.1 latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 2 years ago - 28 downloads - 633 dependencies
ctomlins/freebayes_polish latest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 7 years ago - 172,811 downloads - 289 dependencies
nfcore/universc 1.2.4

Mirror of container for UniverSC: a flexible cross-platform SC data processing pipeline 

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 856 downloads - 2,033 dependencies
intelliseqngs/gatk-4.3.0.0 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 1,637 downloads - 1,038 dependencies
intelliseqngs/gatk-4.2.4.1-grch38-no-alt 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 4 years ago - 642 downloads - 946 dependencies
intelliseqngs/gatk-4.3.0.0-grch38-no-alt 1.1.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 2 years ago - 1,534 downloads - 1,038 dependencies
intelliseqngs/task_vcf-concat-beagle 1.1.3

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 468 downloads - 1,041 dependencies
intelliseqngs/gatk-4.2.4.1-hg38 1.0.0

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 4 years ago - 383 downloads - 946 dependencies
intelliseqngs/task_vcf-vqsr-snp-recalib-hg38 1.1.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 353 downloads - 1,038 dependencies
intelliseqngs/task_genotype-gvcf-on-dbsnp-positions-hg38 1.0.2-chrY-and-the-rest

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 1,125 downloads - 1,040 dependencies
intelliseqngs/task_pileup-merge 1.0.2

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: about 3 years ago - 384 downloads - 1,038 dependencies
chrshrrs/vcat-master sh

  • version: 1.7-2
  • arch: amd64
  • upstream: htslib
  • distro: ubuntu-18.04
Latest release: over 3 years ago - 244 downloads - 693 dependencies