Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
broadinstitute/gatk : 4.5.0.0
Official release repository for GATK versions 4.x
Ubuntu 22.04.3 LTS
Latest release: 11 months ago - 31,988,536 downloads - 912 dependencies
JSONDependencies
- KernSmooth 2.23-18
- MASS 7.3-54
- Matrix 1.3-3
- R6 2.5.0
- RColorBrewer 1.1-2
- Rcpp 1.0.6
- assertthat 0.2.1
- backports 1.1.10
- base 3.6.2
- bitops 1.0-7
- brio 1.1.2
- caTools 1.18.2
- callr 3.7.0
- cli 2.5.0
- colorspace 2.0-1
- compiler 3.6.2
- crayon 1.4.1
- data.table 1.12.8
- datasets 3.6.2
- desc 1.3.0
- diffobj 0.3.4
- digest 0.6.27
- dplyr 0.8.5
- ellipsis 0.3.2
- evaluate 0.14
- fansi 0.4.2
- farver 2.1.0
- gdata 2.18.0
- getopt 1.20.3
- ggplot2 3.3.0
- glue 1.4.2
- gplots 3.0.3
- grDevices 3.6.2
- graphics 3.6.2
- grid 3.6.2
- gsalib 2.1
- gtable 0.3.0
- gtools 3.8.2
- isoband 0.2.4
- jsonlite 1.7.2
- labeling 0.4.2
- lattice 0.20-44
- lifecycle 1.0.0
- magrittr 2.0.1
- methods 3.6.2
- mgcv 1.8-35
- munsell 0.5.0
- nlme 3.1-150
- optparse 1.6.4
- parallel 3.6.2
- pillar 1.6.1
- pkgconfig 2.0.3
- pkgload 1.2.1
- plogr 0.2.0
- praise 1.0.0
- processx 3.5.2
- ps 1.6.0
- purrr 0.3.4
- rematch2 2.1.2
- rlang 0.4.11
- rprojroot 2.0.2
- rstudioapi 0.13
- scales 1.1.1
- splines 3.6.2
- stats4 3.6.2
- stats 3.6.2
- tcltk 3.6.2
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.0.2
- tibble 3.1.2
- tidyselect 1.1.1
- tools 3.6.2
- translations 3.6.2
- utf8 1.2.1
- utils 3.6.2
- vctrs 0.3.8
- viridisLite 0.4.0
- waldo 0.2.5
- withr 2.4.2
- io.netty:netty-codec 4.1.96.Final
- io.netty:netty-common 4.1.96.Final
- ch.qos.reload4j:reload4j 1.2.22
- com.clearspring.analytics:stream 2.9.6
- com.esotericsoftware:kryo-shaded 4.0.2
- com.esotericsoftware:kryo 4.0.0
- com.esotericsoftware:minlog 1.3.0
- com.esotericsoftware:reflectasm 1.11.3
- com.fasterxml.jackson.core:jackson-annotations 2.16.0
- com.fasterxml.jackson.core:jackson-core 2.16.0
- com.fasterxml.jackson.core:jackson-databind 2.16.0
- com.fasterxml.jackson.datatype:jackson-datatype-jsr310 2.16.0
- com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.16.0
- com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.16.0
- com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.16.0
- com.fasterxml.woodstox:woodstox-core 5.3.0
- com.github.fommil.netlib:core 1.1
- com.github.fommil.netlib:native_ref-java 1.1
- com.github.fommil.netlib:native_system-java 1.1
- com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
- com.github.fommil:jniloader 1.1
- com.github.jsr203hadoop:jsr203hadoop 1.0.3
- com.github.pjfanning:jersey-json 1.20
- com.github.stephenc.jcip:jcip-annotations 1.0-1
- com.github.wendykierp:JTransforms 3.1
- com.google.android:annotations 4.1.1.4
- com.google.api-client:google-api-client 2.2.0
- com.google.api.grpc:gapic-google-cloud-storage-v2 2.30.1-alpha
- com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 2.47.0
- com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.171.0
- com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.171.0
- com.google.api.grpc:grpc-google-cloud-storage-v2 2.30.1-alpha
- com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 2.47.0
- com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.171.0
- com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.171.0
- com.google.api.grpc:proto-google-cloud-storage-v2 2.30.1-alpha
- com.google.api.grpc:proto-google-common-protos 2.29.0
- com.google.api.grpc:proto-google-iam-v1 1.24.0
- com.google.api:gax-grpc 2.38.0
- com.google.api:gax-httpjson 2.38.0
- com.google.api:gax 2.38.0
- com.google.apis:google-api-services-bigquery v2-rev20231111-2.0.0
- com.google.apis:google-api-services-storage v1-rev20231202-2.0.0
- com.google.auth:google-auth-library-credentials 1.20.0
- com.google.auth:google-auth-library-oauth2-http 1.20.0
- com.google.auto.service:auto-service-annotations 1.1.1
- com.google.auto.value:auto-value-annotations 1.10.4
- com.google.auto.value:auto-value 1.10.4
- com.google.auto:auto-common 1.2.2
- com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
- com.google.cloud.bigdataoss:gcsio 1.9.4
- com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
- com.google.cloud.bigdataoss:util 1.9.4
- com.google.cloud:google-cloud-bigquery 2.35.0
- com.google.cloud:google-cloud-bigquerystorage 2.47.0
- com.google.cloud:google-cloud-core-grpc 2.28.0
- com.google.cloud:google-cloud-core-http 2.28.0
- com.google.cloud:google-cloud-core 2.28.0
- com.google.cloud:google-cloud-nio 0.127.8
- com.google.cloud:google-cloud-storage 2.30.1
- com.google.code.findbugs:jsr305 3.0.2
- com.google.code.gson:gson 2.10.1
- io.netty:netty-codec-socks 4.1.96.Final
- com.google.errorprone:error_prone_annotations 2.23.0
- com.google.errorprone:error_prone_annotations 2.5.1
- com.google.escapevelocity:escapevelocity 1.1
- com.google.flatbuffers:flatbuffers-java 1.12.0
- com.google.guava:failureaccess 1.0.1
- com.google.guava:guava 32.1.3-jre
- com.google.guava:listenablefuture 1.0
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
- com.google.http-client:google-http-client-apache-v2 1.43.3
- com.google.http-client:google-http-client-appengine 1.43.3
- com.google.http-client:google-http-client-gson 1.43.3
- com.google.http-client:google-http-client-jackson2 1.43.3
- com.google.http-client:google-http-client 1.43.3
- com.google.j2objc:j2objc-annotations 1.3
- com.google.j2objc:j2objc-annotations 2.8
- com.google.oauth-client:google-oauth-client 1.34.1
- com.google.protobuf:protobuf-java 3.7.1
- com.google.re2j:re2j 1.1
- com.googlecode.json-simple:json-simple 1.1.1
- com.nimbusds:nimbus-jose-jwt 9.8.1
- com.ning:compress-lzf 1.1.2
- com.opencsv:opencsv 3.4
- com.squareup:javapoet 1.13.0
- com.sun.istack:istack-commons-runtime 3.0.8
- com.sun.jersey.contribs:jersey-guice 1.19.4
- com.sun.jersey:jersey-client 1.19
- com.sun.jersey:jersey-core 1.19
- com.sun.jersey:jersey-server 1.19.4
- com.sun.jersey:jersey-servlet 1.19
- com.thoughtworks.paranamer:paranamer 2.8
- com.univocity:univocity-parsers 2.9.1
- commons-beanutils:commons-beanutils 1.9.3
- commons-beanutils:commons-beanutils 1.9.4
- commons-cli:commons-cli 1.2
- commons-codec:commons-codec 1.15
- commons-codec:commons-codec 1.16.0
- commons-collections:commons-collections 3.2.2
- commons-io:commons-io 2.11.0
- commons-io:commons-io 2.13.0
- commons-logging:commons-logging 1.2
- commons-net:commons-net 3.6
- de.javakaffee:kryo-serializers 0.45
- dev.ludovic.netlib:arpack 3.0.3
- dev.ludovic.netlib:blas 3.0.3
- dev.ludovic.netlib:lapack 3.0.3
- dnsjava:dnsjava 2.1.7
- gov.nist.math.jama:gov.nist.math.jama 1.1.1
- io.airlift:aircompressor 0.25
- io.dropwizard.metrics:metrics-core 4.2.19
- io.dropwizard.metrics:metrics-graphite 4.2.19
- io.dropwizard.metrics:metrics-jmx 4.2.19
- io.dropwizard.metrics:metrics-json 4.2.19
- io.dropwizard.metrics:metrics-jvm 4.2.19
- io.netty:netty-all 4.1.96.Final
- io.netty:netty-buffer 4.1.96.Final
- io.netty:netty-codec-http2 4.1.96.Final
- io.netty:netty-codec-http 4.1.96.Final
- io.netty:netty-handler-proxy 4.1.96.Final
- io.netty:netty-handler 4.1.96.Final
- io.netty:netty-resolver 4.1.96.Final
- io.netty:netty-transport-classes-epoll 4.1.96.Final
- io.netty:netty-transport-classes-kqueue 4.1.96.Final
- io.netty:netty-transport-native-epoll 4.1.96.Final
- io.netty:netty-transport-native-kqueue 4.1.96.Final
- io.netty:netty-transport-native-unix-common 4.1.96.Final
- io.netty:netty-transport 4.1.96.Final
- jakarta.activation:jakarta.activation-api 1.2.1
- jakarta.annotation:jakarta.annotation-api 1.3.5
- jakarta.servlet:jakarta.servlet-api 4.0.3
- jakarta.validation:jakarta.validation-api 2.0.2
- jakarta.ws.rs:jakarta.ws.rs-api 2.1.6
- jakarta.xml.bind:jakarta.xml.bind-api 2.3.2
- jarhdf5:jarhdf5 2.11.0
- javax.annotation:javax.annotation-api 1.3.2
- javax.servlet:javax.servlet-api 3.1.0
- javax.ws.rs:jsr311-api 1.1.1
- javax.xml.bind:jaxb-api 2.2.11
- joda-time:joda-time 2.12.5
- jrt-fs:jrt-fs 17.0.9
- log4j:log4j 1.2.17
- net.grey-panther:natural-comparator 1.1
- net.minidev:accessors-smart 2.4.7
- net.minidev:json-smart 1.3.2
- net.openhft:zero-allocation-hashing 0.9
- net.razorvine:pickle 1.3
- net.sf.jopt-simple:jopt-simple 5.0.3
- net.sf.opencsv:opencsv 2.3
- net.sf.py4j:py4j 0.10.9.7
- org.aeonbits.owner:owner 1.0.9
- org.antlr:antlr4-runtime 4.9.3
- org.apache.arrow:arrow-format 14.0.1
- org.apache.arrow:arrow-memory-core 14.0.1
- org.apache.arrow:arrow-memory-netty 14.0.1
- org.apache.arrow:arrow-vector 14.0.1
- org.apache.avro:avro-ipc 1.11.2
- org.apache.avro:avro-mapred 1.11.2
- org.apache.avro:avro 1.11.2
- org.apache.commons:commons-collections4 4.4
- org.apache.commons:commons-compress 1.21
- org.apache.commons:commons-compress 1.24.0
- org.apache.commons:commons-configuration2 2.9.0
- org.apache.commons:commons-crypto 1.1.0
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.14.0
- org.apache.commons:commons-math3 3.5
- org.apache.commons:commons-text 1.10.0
- org.apache.commons:commons-vfs2 2.9.0
- org.apache.curator:curator-client 5.2.0
- org.apache.curator:curator-framework 5.2.0
- org.apache.curator:curator-recipes 5.2.0
- org.apache.datasketches:datasketches-java 3.3.0
- org.apache.datasketches:datasketches-memory 2.1.0
- org.apache.hadoop.thirdparty:hadoop-shaded-guava 1.1.1
- org.apache.hadoop.thirdparty:hadoop-shaded-protobuf_3_7 1.1.1
- org.apache.hadoop:hadoop-annotations 3.3.4
- org.apache.hadoop:hadoop-auth 3.3.6
- org.apache.hadoop:hadoop-client-api 3.3.4
- org.apache.hadoop:hadoop-client 3.3.6
- org.apache.hadoop:hadoop-common 3.3.6
- org.apache.hadoop:hadoop-hdfs-client 3.3.6
- org.apache.hadoop:hadoop-mapreduce-client-common 3.3.6
- org.apache.hadoop:hadoop-mapreduce-client-core 3.3.6
- org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.3.6
- org.apache.hadoop:hadoop-yarn-api 3.3.6
- org.apache.hadoop:hadoop-yarn-client 3.3.6
- org.apache.hadoop:hadoop-yarn-common 3.3.6
- org.apache.hive:hive-storage-api 2.8.1
- org.apache.httpcomponents:httpclient 4.5.14
- org.apache.httpcomponents:httpcore 4.4.13
- org.apache.httpcomponents:httpcore 4.4.16
- org.apache.kerby:kerb-admin 1.0.1
- org.apache.kerby:kerb-client 1.0.1
- org.apache.kerby:kerb-common 1.0.1
- org.apache.kerby:kerb-core 1.0.1
- org.apache.kerby:kerb-crypto 1.0.1
- org.apache.kerby:kerb-identity 1.0.1
- org.apache.kerby:kerb-server 1.0.1
- org.apache.kerby:kerb-simplekdc 1.0.1
- org.apache.kerby:kerb-util 1.0.1
- org.apache.kerby:kerby-asn1 1.0.1
- org.apache.kerby:kerby-config 1.0.1
- org.apache.kerby:kerby-pkix 1.0.1
- org.apache.kerby:kerby-util 1.0.1
- org.apache.kerby:kerby-xdr 1.0.1
- org.apache.kerby:token-provider 1.0.1
- org.apache.logging.log4j:log4j-1.2-api 2.20.0
- org.apache.logging.log4j:log4j-api 2.20.0
- org.apache.logging.log4j:log4j-core 2.20.0
- org.apache.logging.log4j:log4j-jcl 2.17.1
- org.apache.logging.log4j:log4j-slf4j2-impl 2.20.0
- org.apache.orc:orc-core 1.9.1
- org.apache.orc:orc-mapreduce 1.9.1
- org.apache.orc:orc-shims 1.9.1
- org.apache.parquet:parquet-column 1.13.1
- org.apache.parquet:parquet-common 1.13.1
- org.apache.parquet:parquet-encoding 1.13.1
- org.apache.parquet:parquet-format-structures 1.13.1
- org.apache.parquet:parquet-hadoop 1.13.1
- org.apache.parquet:parquet-jackson 1.13.1
- org.apache.spark:spark-catalyst_2.12 3.5.0
- org.apache.spark:spark-common-utils_2.12 3.5.0
- org.apache.spark:spark-core_2.12 3.5.0
- org.apache.spark:spark-graphx_2.12 3.5.0
- org.apache.spark:spark-kvstore_2.12 3.5.0
- org.apache.spark:spark-launcher_2.12 3.5.0
- org.apache.spark:spark-mllib-local_2.12 3.5.0
- org.apache.spark:spark-mllib_2.12 3.5.0
- org.apache.spark:spark-network-common_2.12 3.5.0
- org.apache.spark:spark-network-shuffle_2.12 3.5.0
- org.apache.spark:spark-sketch_2.12 3.5.0
- org.apache.spark:spark-sql-api_2.12 3.5.0
- org.apache.spark:spark-sql_2.12 3.5.0
- org.apache.spark:spark-streaming_2.12 3.5.0
- org.apache.spark:spark-tags_2.12 3.5.0
- org.apache.spark:spark-unsafe_2.12 3.5.0
- org.apache.xbean:xbean-asm9-shaded 4.23
- org.apache.yetus:audience-annotations 0.13.0
- org.apache.zookeeper:zookeeper-jute 3.6.3
- org.apache.zookeeper:zookeeper 3.6.3
- org.broadinstitute.hellbender.Main:gatk-package 4.5.0.0-local
- org.broadinstitute.hellbender.Main:gatk-package 4.5.0.0-spark
- org.codehaus.janino:commons-compiler 3.1.9
- org.codehaus.janino:janino 3.1.9
- org.codehaus.jettison:jettison 1.1
- org.codehaus.mojo:animal-sniffer-annotations 1.17
- org.codehaus.mojo:animal-sniffer-annotations 1.23
- org.codehaus.woodstox:stax2-api 4.2.1
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.disq-bio:disq 0.3.8
- org.eclipse.jetty.websocket:websocket-api 9.4.43.v20210629
- org.eclipse.jetty.websocket:websocket-client 9.4.43.v20210629
- org.eclipse.jetty.websocket:websocket-common 9.4.43.v20210629
- org.eclipse.jetty:jetty-client 9.4.52.v20230823
- org.eclipse.jetty:jetty-continuation 9.4.52.v20230823
- org.eclipse.jetty:jetty-http 9.4.52.v20230823
- org.eclipse.jetty:jetty-io 9.4.52.v20230823
- org.eclipse.jetty:jetty-plus 9.4.52.v20230823
- org.eclipse.jetty:jetty-proxy 9.4.52.v20230823
- org.eclipse.jetty:jetty-security 9.4.52.v20230823
- org.eclipse.jetty:jetty-server 9.4.52.v20230823
- org.eclipse.jetty:jetty-servlet 9.4.52.v20230823
- org.eclipse.jetty:jetty-servlets 9.4.52.v20230823
- org.eclipse.jetty:jetty-util-ajax 9.4.43.v20210629
- org.eclipse.jetty:jetty-util 9.4.52.v20230823
- org.eclipse.jetty:jetty-webapp 9.4.43.v20210629
- org.eclipse.jetty:jetty-xml 9.4.43.v20210629
- org.fusesource.leveldbjni:leveldbjni-all 1.8
- org.genomicsdb:genomicsdb 1.5.1
- org.glassfish.hk2.external:aopalliance-repackaged 2.6.1
- org.glassfish.hk2.external:jakarta.inject 2.6.1
- org.glassfish.hk2:hk2-api 2.6.1
- org.glassfish.hk2:hk2-locator 2.6.1
- org.glassfish.hk2:hk2-utils 2.6.1
- org.glassfish.hk2:osgi-resource-locator 1.0.3
- org.glassfish.jaxb:jaxb-runtime 2.3.2
- org.glassfish.jersey.containers:jersey-container-servlet-core 2.40
- org.glassfish.jersey.containers:jersey-container-servlet 2.40
- org.glassfish.jersey.core:jersey-client 2.40
- org.glassfish.jersey.core:jersey-common 2.40
- org.glassfish.jersey.core:jersey-server 2.40
- org.glassfish.jersey.inject:jersey-hk2 2.40
- org.hipparchus:hipparchus-core 2.0
- org.hipparchus:hipparchus-stat 2.0
- org.javassist:javassist 3.18.2-GA
- org.javassist:javassist 3.29.2-GA
- org.jctools:jctools-core 3.1.0
- org.jetbrains:annotations 13.0
- org.jgrapht:jgrapht-core 1.1.0
- org.jgrapht:jgrapht-io 1.1.0
- org.jline:jline-builtins 3.9.0
- org.jline:jline-reader 3.9.0
- org.jline:jline-remote-ssh 3.9.0
- org.jline:jline-remote-telnet 3.9.0
- org.jline:jline-style 3.9.0
- org.jline:jline-terminal-jansi 3.9.0
- org.jline:jline-terminal-jna 3.9.0
- org.jline:jline-terminal 3.9.0
- org.jline:jline 3.9.0
- org.jpmml:pmml-model 1.4.8
- org.json:json 20231013
- org.ojalgo:ojalgo-commons-math3 1.0.0
- org.ojalgo:ojalgo 44.0.0
- org.reflections:reflections 0.9.10
- org.slf4j:jcl-over-slf4j 2.0.7
- org.slf4j:slf4j-api 2.0.7
- org.slf4j:slf4j-log4j12 1.7.21
- org.slf4j:slf4j-reload4j 1.7.36
- org.spark-project.spark:unused 1.0.0
- org.threeten:threeten-extra 1.7.2
- org.threeten:threetenbp 1.6.8
- org.xerial:sqlite-jdbc 3.44.1.0
- pl.edu.icm:JLargeArrays 1.5
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/apt 2.4.11
- ubuntu/base-files 12ubuntu4.4
- ubuntu/base-passwd 3.5.52build1
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- ubuntu/bc 1.07.1-3build1
- ubuntu/bcftools 1.13-1
- ubuntu/bedtools 2.30.0 dfsg-2ubuntu0.1
- ubuntu/binutils-common 2.38-4ubuntu2.4
- ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.4
- ubuntu/binutils 2.38-4ubuntu2.4
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/build-essential 12.9ubuntu3
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909ubuntu1.2
- ubuntu/ca-certificates 20230311ubuntu0.22.04.1
- ubuntu/coreutils 8.32-4.1ubuntu1
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- ubuntu/cpp 4:11.2.0-1ubuntu1
- ubuntu/curl 7.81.0-1ubuntu1.15
- ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
- ubuntu/dbus 1.12.20-2ubuntu4.1
- ubuntu/debconf 1.5.79ubuntu1
- ubuntu/debianutils 5.5-1ubuntu2
- ubuntu/diffutils 1:3.8-0ubuntu2
- ubuntu/distro-info-data 0.52ubuntu0.5
- ubuntu/dpkg-dev 1.21.1ubuntu2.2
- ubuntu/dpkg 1.21.1ubuntu2.2
- ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
- ubuntu/findutils 4.8.0-1ubuntu3
- ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
- ubuntu/fontconfig 2.13.1-4.2ubuntu5
- ubuntu/fonts-dejavu-core 2.37-2build1
- ubuntu/g -11 11.4.0-1ubuntu1~22.04
- ubuntu/g 4:11.2.0-1ubuntu1
- ubuntu/policykit-1 0.105-33
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- twine 4.0.1
- typing-extensions 4.4.0
- urllib3 1.26.12
- virtualenv 20.16.7
- webencodings 0.5.1
- wheel 0.38.4
- win-inet-pton 1.1.0
- wrapt 1.12.1
- zipp 3.10.0
- jquery-ui 1.12.1