nfcore/diaproteomics : dev
A Docker container for nf-core/diaproteomics
Latest release: almost 5 years ago - 7,344 downloads - 488 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- BH 1.75.0-0
- Biobase 2.50.0
- BiocGenerics 0.36.0
- BiocManager 1.30.10
- BiocParallel 1.24.0
- DBI 1.1.0
- DIAlignR 1.99.18
- KernSmooth 2.23-18
- MASS 7.3-54
- MSstats 3.20.1
- Matrix 1.3-4
- ProtGenerics 1.22.0
- R6 2.5.0
- RColorBrewer 1.1-2
- RMSNumpress 1.0.1
- RSQLite 2.2.1
- Rcpp 1.0.5
- RcppEigen 0.3.3.9.1
- Rhdf5lib 1.12.1
- ape 5.4-1
- assertthat 0.2.1
- backports 1.2.1
- base 4.0.2
- bit64 4.0.5
- bit 4.0.4
- bitops 1.0-7
- blob 1.2.1
- boot 1.3-28
- brio 1.1.2
- broom 0.7.7
- caTools 1.18.2
- cachem 1.0.5
- callr 3.7.0
- cli 2.5.0
- codetools 0.2-18
- colorspace 2.0-1
- compiler 4.0.2
- crayon 1.4.1
- data.table 1.14.0
- datasets 4.0.2
- desc 1.3.0
- diffobj 0.3.4
- digest 0.6.27
- doSNOW 1.0.19
- dplyr 1.0.2
- ellipsis 0.3.2
- evaluate 0.14
- fansi 0.5.0
- farver 2.1.0
- fastmap 1.1.0
- fastmatch 1.1-0
- foreach 1.5.1
- formatR 1.11
- futile.logger 1.4.3
- futile.options 1.0.1
- gdata 2.18.0
- generics 0.1.0
- ggplot2 3.3.2
- ggrepel 0.9.1
- glue 1.4.2
- gplots 3.1.0
- grDevices 4.0.2
- graphics 4.0.2
- grid 4.0.2
- gridExtra 2.3
- gtable 0.3.0
- gtools 3.9.2
- igraph 1.2.6
- isoband 0.2.4
- iterators 1.0.13
- jsonlite 1.7.2
- labeling 0.4.2
- lambda.r 1.2.4
- lattice 0.20-44
- lifecycle 1.0.0
- limma 3.44.1
- lme4 1.1-27
- magrittr 2.0.1
- marray 1.66.0
- memoise 2.0.0
- methods 4.0.2
- mgcv 1.8-36
- minpack.lm 1.2-1
- minqa 1.2.4
- munsell 0.5.0
- mzR 2.24.0
- ncdf4 1.17
- nlme 3.1-150
- nloptr 1.2.2.2
- parallel 4.0.2
- phangorn 2.5.5
- pillar 1.6.1
- pkgconfig 2.0.3
- pkgload 1.2.1
- plogr 0.2.0
- plyr 1.8.6
- pracma 2.3.3
- praise 1.0.0
- preprocessCore 1.50.0
- processx 3.5.2
- ps 1.6.0
- purrr 0.3.4
- quadprog 1.5-8
- randomForest 4.6-14
- rappdirs 0.3.3
- rematch2 2.1.2
- remotes 2.2.0
- reshape2 1.4.4
- reticulate 1.18
- rlang 0.4.10
- rprojroot 2.0.2
- rstudioapi 0.13
- scales 1.1.1
- signal 0.7-6
- snow 0.4-3
- splines 4.0.2
- statmod 1.4.35
- stats4 4.0.2
- stats 4.0.2
- stringi 1.5.3
- stringr 1.4.0
- survival 3.2-11
- tcltk 4.0.2
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.0.3
- tibble 3.1.2
- tidyr 1.1.2
- tidyselect 1.1.1
- tools 4.0.2
- translations 4.0.2
- utf8 1.2.1
- utils 4.0.2
- vctrs 0.3.8
- viridisLite 0.4.0
- waldo 0.2.5
- withr 2.4.2
- zlibbioc 1.36.0
- zoo 1.8-8
- debian/adduser 3.118
- debian/apt 1.8.2.1
- debian/base-files 10.3 deb10u6
- debian/base-passwd 3.5.46
- debian/bash 5.0-4
- debian/bsdutils 1:2.33.1-0.1
- debian/bzip2 1.0.6-9.2~deb10u1
- debian/ca-certificates 20200601~deb10u1
- debian/coreutils 8.30-3
- debian/dash 0.5.10.2-5
- debian/debconf 1.5.71
- debian/debian-archive-keyring 2019.1
- debian/debianutils 4.8.6.1
- debian/diffutils 1:3.7-3
- debian/dpkg 1.19.7
- debian/e2fsprogs 1.44.5-1 deb10u3
- debian/fdisk 2.33.1-0.1
- debian/file 1:5.35-4 deb10u1
- debian/findutils 4.6.0 git 20190209-2
- debian/gcc-8-base 8.3.0-6
- debian/git-man 1:2.20.1-2 deb10u3
- debian/git 1:2.20.1-2 deb10u3
- debian/gpgv 2.2.12-1 deb10u1
- debian/grep 3.3-1
- debian/gzip 1.9-3
- debian/hostname 3.21
- debian/init-system-helpers 1.56 nmu1
- debian/krb5-locales 1.17-3 deb10u1
- debian/less 487-0.1 b1
- debian/libacl1 2.2.53-4
- debian/libapr1 1.6.5-1 b1
- debian/libaprutil1 1.6.1-4
- debian/libapt-pkg5.0 1.8.2.1
- debian/libattr1 1:2.4.48-4
- debian/libaudit-common 1:2.8.4-3
- debian/libaudit1 1:2.8.4-3
- debian/libblkid1 2.33.1-0.1
- debian/libbsd0 0.9.1-2
- debian/libbz2-1.0 1.0.6-9.2~deb10u1
- debian/libc-bin 2.28-10
- debian/libc6 2.28-10
- debian/libcap-ng0 0.7.9-2
- debian/libcom-err2 1.44.5-1 deb10u3
- debian/libcurl3-gnutls 7.64.0-4 deb10u1
- debian/libdb5.3 5.3.28 dfsg1-0.5
- debian/libdebconfclient0 0.249
- debian/libedit2 3.1-20181209-1
- debian/liberror-perl 0.17027-2
- debian/libexpat1 2.2.6-2 deb10u1
- debian/libext2fs2 1.44.5-1 deb10u3
- debian/libfdisk1 2.33.1-0.1
- debian/libffi6 3.2.1-9
- debian/libgcc1 1:8.3.0-6
- debian/libgcrypt20 1.8.4-5
- debian/libgdbm-compat4 1.18.1-4
- debian/libgdbm6 1.18.1-4
- debian/libglib2.0-0 2.58.3-2 deb10u2
- debian/libglib2.0-data 2.58.3-2 deb10u2
- debian/libgmp10 2:6.1.2 dfsg-4
- debian/libgnutls30 3.6.7-4 deb10u5
- debian/libgpg-error0 1.35-1
- debian/libgpm2 1.20.7-5
- debian/libgssapi-krb5-2 1.17-3 deb10u1
- debian/libhogweed4 3.4.1-1
- debian/libice6 2:1.0.9-2
- debian/libicu63 63.1-6 deb10u1
- debian/libidn2-0 2.0.5-1 deb10u1
- debian/libk5crypto3 1.17-3 deb10u1
- debian/libkeyutils1 1.6-6
- debian/libkrb5-3 1.17-3 deb10u1
- debian/libkrb5support0 1.17-3 deb10u1
- debian/libldap-2.4-2 2.4.47 dfsg-3 deb10u4
- debian/libldap-common 2.4.47 dfsg-3 deb10u4
- debian/liblz4-1 1.8.3-1
- debian/liblzma5 5.2.4-1
- debian/libmagic-mgc 1:5.35-4 deb10u1
- debian/libmagic1 1:5.35-4 deb10u1
- debian/libmount1 2.33.1-0.1
- debian/libncurses6 6.1 20181013-2 deb10u2
- debian/libncursesw6 6.1 20181013-2 deb10u2
- debian/libnettle6 3.4.1-1
- debian/libnghttp2-14 1.36.0-2 deb10u1
- debian/libp11-kit0 0.23.15-2
- debian/libpam-modules-bin 1.3.1-5
- debian/libpam-modules 1.3.1-5
- debian/libpam-runtime 1.3.1-5
- debian/libpam0g 1.3.1-5
- debian/libpcre2-8-0 10.32-5
- debian/libpcre3 2:8.39-12
- debian/libperl5.28 5.28.1-6 deb10u1
- debian/libprocps7 2:3.3.15-2
- debian/libpsl5 0.20.2-2
- debian/libpython-stdlib 2.7.16-1
- debian/libpython2-stdlib 2.7.16-1
- debian/libpython2.7-minimal 2.7.16-2 deb10u1
- debian/libpython2.7-stdlib 2.7.16-2 deb10u1
- debian/libreadline7 7.0-5
- debian/librtmp1 2.4 20151223.gitfa8646d.1-2
- debian/libsasl2-2 2.1.27 dfsg-1 deb10u1
- debian/libsasl2-modules-db 2.1.27 dfsg-1 deb10u1
- debian/libsasl2-modules 2.1.27 dfsg-1 deb10u1
- debian/libseccomp2 2.3.3-4
- debian/libselinux1 2.8-1 b1
- debian/libsemanage-common 2.8-2
- debian/libsemanage1 2.8-2
- debian/libsepol1 2.8-1
- debian/libserf-1-1 1.3.9-7 b10
- debian/libsm6 2:1.2.3-1
- debian/libsmartcols1 2.33.1-0.1
- debian/libsqlite3-0 3.27.2-3 deb10u1
- debian/libss2 1.44.5-1 deb10u3
- debian/libssh2-1 1.8.0-2.1
- debian/libssl1.1 1.1.1d-0 deb10u3
- debian/libstdc 6 8.3.0-6
- debian/libsvn1 1.10.4-1 deb10u1
- debian/libsystemd0 241-7~deb10u4
- debian/libtasn1-6 4.13-3
- debian/libtinfo6 6.1 20181013-2 deb10u2
- debian/libudev1 241-7~deb10u4
- debian/libunistring2 0.9.10-1
- debian/libutf8proc2 2.3.0-1
- debian/libuuid1 2.33.1-0.1
- debian/libx11-6 2:1.6.7-1 deb10u1
- debian/libx11-data 2:1.6.7-1 deb10u1
- debian/libxau6 1:1.0.8-1 b2
- debian/libxcb1 1.13.1-2
- debian/libxdmcp6 1:1.1.2-3
- debian/libxext6 2:1.3.3-1 b2
- debian/libxml2 2.9.4 dfsg1-7 deb10u1
- debian/libxmuu1 2:1.1.2-2 b3
- debian/libxrender1 1:0.9.10-1
- debian/libzstd1 1.3.8 dfsg-3
- debian/login 1:4.5-1.1
- debian/lsb-base 10.2019051400
- debian/mawk 1.3.3-17 b3
- debian/mercurial-common 4.8.2-1 deb10u1
- debian/mercurial 4.8.2-1 deb10u1
- debian/mime-support 3.62
- debian/mount 2.33.1-0.1
- debian/ncurses-base 6.1 20181013-2 deb10u2
- debian/ncurses-bin 6.1 20181013-2 deb10u2
- debian/netbase 5.6
- debian/openssh-client 1:7.9p1-10 deb10u2
- debian/openssl 1.1.1d-0 deb10u3
- debian/passwd 1:4.5-1.1
- debian/patch 2.7.6-3 deb10u1
- debian/perl-base 5.28.1-6 deb10u1
- debian/perl-modules-5.28 5.28.1-6 deb10u1
- debian/perl 5.28.1-6 deb10u1
- debian/procps 2:3.3.15-2
- debian/psmisc 23.2-1
- debian/publicsuffix 20190415.1030-1
- debian/python-minimal 2.7.16-1
- debian/python2-minimal 2.7.16-1
- debian/python2.7-minimal 2.7.16-2 deb10u1
- debian/python2.7 2.7.16-2 deb10u1
- debian/python2 2.7.16-1
- debian/python 2.7.16-1
- debian/readline-common 7.0-5
- debian/sed 4.7-1
- debian/sensible-utils 0.0.12
- debian/shared-mime-info 1.10-1
- debian/subversion 1.10.4-1 deb10u1
- debian/sysvinit-utils 2.93-8
- debian/tar 1.30 dfsg-6
- debian/tzdata 2020d-0 deb10u1
- debian/ucf 3.0038 nmu1
- debian/util-linux 2.33.1-0.1
- debian/wget 1.20.1-1.1
- debian/x11-common 1:7.7 19
- debian/xauth 1:1.0.10-1
- debian/xdg-user-dirs 0.17-2
- debian/xz-utils 5.2.4-1
- debian/zlib1g 1:1.2.11.dfsg-1
- Recalibration:Recalibration 1.0
- US_export_policy:US_export_policy *
- canopus_predict_oss:canopus_predict_oss 1.1.3
- ch.qos.logback:logback-classic 1.1.6
- ch.qos.logback:logback-core 1.1.6
- charsets:charsets *
- chemdb_file_oss:chemdb_file_oss 1.1.3
- chemdb_rest_oss:chemdb_rest_oss 1.1.3
- chemdb_sql_oss:chemdb_sql_oss 1.1.3
- chemical_db_oss:chemical_db_oss 1.1.3
- chemistry_base:chemistry_base 4.0.1
- cldrdata:cldrdata *
- com.github.chhh:javolution-core-java-msftbx 6.11.3
- com.github.chhh:msftbx 1.2.1-SNAPSHOT
- com.github.davidmoten:guava-mini 0.1
- com.github.davidmoten:rtree 0.8-RC10
- com.github.davidmoten:rxjava-extras 0.7
- com.github.oshi:oshi-core 3.4.4
- com.google.classpath-explorer:classpath-explorer 1.0
- com.google.code.gson:gson 2.6.2
- com.google.guava:guava 18.0
- com.google.guava:guava 21.0
- com.ongres.scram:client 1.0.0-beta.2
- com.ongres.scram:common 1.0.0-beta.2
- com.sun.codemodel:codemodel 2.6
- com.sun.istack:istack-commons-runtime 2.16
- com.sun.istack:istack-commons-tools 2.16
- com.sun.jna.platform:jna-platform 4.5.0
- com.sun.jna:jna 4.5.0
- com.sun.mail:javax.mail 1.5.2
- com.sun.xml.dtd-parser:dtd-parser 1.2-SNAPSHOT
- com.sun.xml.txw2:txw2 20110809
- com.sun.xsom:xsom 20110809
- com.sun:activation 1.1.1
- com.sun:jce 1.8.0_152
- com.sun:sunec 1.8.0_152
- com.sun:sunjce_provider 1.8.0_152
- com.sun:sunpkcs11 1.8.0_152
- commons-codec:commons-codec 1.7
- commons-codec:commons-codec 1.9
- commons-collections:commons-collections 3.2.2
- commons-io:commons-io 2.4
- commons-logging:commons-logging 1.2
- de.unijena.bioinf:GraphUtils 1.1
- de.unijena.bioinf:java-utilities 1.0-SNAPSHOT
- dnsns:dnsns *
- dt:dt *
- edu.ucsd.msgf:MSGFPlus 1.0.0-SNAPSHOT
- error-reporter:error-reporter 0.9.2
- fingerblast_oss:fingerblast_oss 1.1.3
- fingerid_db_oss:fingerid_db_oss 1.1.3
- fingerid_utils_oss:fingerid_utils_oss 1.1.3
- fingerprint_pvalues_oss:fingerprint_pvalues_oss 1.1.3
- fingerprinter_oss:fingerprinter_oss 1.1.3
- fragmentation_tree_construction:fragmentation_tree_construction 4.0.1
- gibbs_sampling:gibbs_sampling 4.0.1
- glazedlists_java16:glazedlists_java16 1.10.0
- io:io 4.0.1
- isotope_pattern_analysis:isotope_pattern_analysis 4.0.1
- jaccess:jaccess *
- jama:jama 1.0.3
- javax.json:javax.json-api 1.0
- javax.vecmath:vecmath 1.5.2
- javax.xml.bind:jaxb-api 2.2.7
- jconsole:jconsole *
- jewelcli:jewelcli 0.8.9
- jfxrt:jfxrt *
- jfxswt:jfxswt *
- jjobs-core:jjobs-core 0.9.6
- jjobs-swing:jjobs-swing 0.9.6
- json:json 1.0
- jsse:jsse 1.8.0_152-release
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.14
- luciphor2:luciphor2 *
- management-agent:management-agent *
- mass_decomposer:mass_decomposer 4.0.1
- nashorn:nashorn 1.8.0_152-release-1056-b12
- net.iharder:base64 2.3.8
- net.sf.jnati:jnati-core 0.4
- net.sf.jnati:jnati-deploy 0.4
- net.sf.jni-inchi:jni-inchi 0.8
- net.sf.opencsv:opencsv 2.3
- net.sourceforge.cpdetector:cpdetector 1.0.7
- net.sourceforge.jargs:jargs 1.0
- org.apache.commons:commons-email 1.4
- org.apache.commons:commons-lang3 3.5
- org.apache.commons:commons-math3 3.2
- org.apache.commons:commons-math3 3.6.1
- org.apache.commons:commons-pool2 2.4.2
- org.apache.httpcomponents:httpclient 4.5.1
- org.apache.httpcomponents:httpcore 4.4.3
- org.apache.logging.log4j:log4j-api 2.6.1
- org.apache.logging.log4j:log4j-core 2.6.1
- org.apache.logging.log4j:log4j-slf4j-impl 2.6.1
- org.apache.maven:maven-artifact 3.5.0
- org.apache.xerces.impl.Version:xercesImpl 2.8.0
- org.apache.xmlcommons.Version:xml-apis 2.0.2
- org.codehaus.plexus:plexus-utils 3.0.24
- org.ejml.core:ejml-core 0.31
- org.ejml.ddense:ejml-ddense 0.31
- org.ejml.fdense:ejml-fdense 0.31
- org.ejml.simple:ejml-simple 0.31
- org.glassfish:javax.json 1.0.4
- org.gnu.glpk:glpk-java 1.7.0
- org.javatuples:javatuples 1.3-SNAPSHOT
- org.jaxen:xom 1.2.5
- org.jetbrains:annotations 15.0
- org.jvnet.com4j:com4j 2.1
- org.kohsuke.rngom:rngom 201103-SNAPSHOT
- org.openscience.cdk:cdk-atomtype 2.1.1
- org.openscience.cdk:cdk-charges 2.1.1
- org.openscience.cdk:cdk-core 2.1.1
- org.openscience.cdk:cdk-ctab 2.1.1
- org.openscience.cdk:cdk-data 2.1.1
- org.openscience.cdk:cdk-dict 2.1.1
- org.openscience.cdk:cdk-fingerprint 2.1.1
- org.openscience.cdk:cdk-forcefield 2.1.1
- org.openscience.cdk:cdk-formula 2.1.1
- org.openscience.cdk:cdk-fragment 2.1.1
- org.openscience.cdk:cdk-hash 2.1.1
- org.openscience.cdk:cdk-inchi 2.1.1
- org.openscience.cdk:cdk-interfaces 2.1.1
- org.openscience.cdk:cdk-io 2.1.1
- org.openscience.cdk:cdk-ioformats 2.1.1
- org.openscience.cdk:cdk-isomorphism 2.1.1
- org.openscience.cdk:cdk-qsar 2.1.1
- org.openscience.cdk:cdk-qsaratomic 2.1.1
- org.openscience.cdk:cdk-qsarmolecular 2.1.1
- org.openscience.cdk:cdk-reaction 2.1.1
- org.openscience.cdk:cdk-render 2.1.1
- org.openscience.cdk:cdk-renderawt 2.1.1
- org.openscience.cdk:cdk-renderbasic 2.1.1
- org.openscience.cdk:cdk-renderextra 2.1.1
- org.openscience.cdk:cdk-sdg 2.1.1
- org.openscience.cdk:cdk-silent 2.1.1
- org.openscience.cdk:cdk-smarts 2.1.1
- org.openscience.cdk:cdk-smiles 2.1.1
- org.openscience.cdk:cdk-standard 2.1.1
- org.openscience.cdk:cdk-valencycheck 2.1.1
- org.postgresql:postgresql 42.2.1
- org.slf4j:jcl-over-slf4j 1.7.19
- org.slf4j:slf4j-api 1.7.19
- org.slf4j:slf4j-api 1.7.22
- org.slf4j:slf4j-api 1.7.25
- org.slf4j:slf4j-jdk14 1.7.25
- org.swinglabs.swingx:swingx-all 1.6.5-1
- org.threeten:threetenbp 1.3.6
- psidev.psi.tools:xxindex 0.21
- resources:resources 1.8.0_152-release
- rt:rt 1.8.0_152-release
- sa-jdi:sa-jdi *
- sirius_api:sirius_api 4.0.1
- sirius_cli:sirius_cli 4.0.1
- sirius_gui:sirius_gui 4.0.1
- tools:tools *
- trove4j:trove4j 3.0.3
- uk.ac.ebi.beam:beam-core 1.1
- uk.ac.ebi.beam:beam-func 1.1
- uk.ac.ebi.jmzidml:jmzidentml 1.2.7
- uk.ac.ebi.jmzml:jmzml 1.7.9
- uk.ac.ebi.pride.jaxb:pride-jaxb 1.0.19
- uk.ac.ebi.pride.tools:jmzreader 2.0.1
- xalan:xalan 2.7.0
- zipfs:zipfs 1.8.0_152-release