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intelliseqngs/resources : longranger_v0.1

Latest release: over 4 years ago - 312 downloads - 1,305 dependencies

JSON

Dependencies

HMM 1.0
KernSmooth 2.23-15
MASS 7.3-48
R6 2.2.2
RColorBrewer 1.1-2
Rcpp 0.12.15
assertthat 0.2.0
base 3.2.5
bitops 1.0-6
caTools 1.17.1
cli 1.0.0
colorspace 1.3-2
compiler 3.2.5
crayon 1.3.4
data.table 1.10.4-2
datasets 3.2.5
dichromat 2.0-0
digest 0.6.15
gdata 2.18.0
getopt 1.20.0
ggplot2 2.2.1
gplots 3.0.1
grDevices 3.2.5
graphics 3.2.5
grid 3.2.5
gsalib 2.1
gtable 0.2.0
gtools 3.5.0
labeling 0.3
lazyeval 0.2.1
magrittr 1.5
methods 3.2.5
munsell 0.4.3
optparse 1.3.2
parallel 3.2.5
pillar 1.1.0
plyr 1.8.4
reshape2 1.4.3
rlang 0.1.6
scales 0.5.0
splines 3.2.5
stats4 3.2.5
stats 3.2.5
stringi 1.1.6
stringr 1.2.0
tcltk 3.2.5
testRcppClass 0.1
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 1.4.2
tools 3.2.5
translations 3.2.5
utf8 1.1.3
utils 3.2.5
viridisLite 0.2.0

ubuntu/adduser 3.113 nmu3ubuntu4
ubuntu/apt-utils 1.2.24
ubuntu/apt 1.2.24
ubuntu/aufs-tools 1:3.2 20130722-1.1ubuntu1
ubuntu/autoconf 2.69-9
ubuntu/automake 1:1.15-4ubuntu1
ubuntu/autotools-dev 20150820.1
ubuntu/base-files 9.4ubuntu4.5
ubuntu/base-passwd 3.5.39
ubuntu/bash 4.3-14ubuntu1.2
ubuntu/bedtools 2.25.0-1
ubuntu/binutils 2.26.1-1ubuntu1~16.04.5
ubuntu/bsdmainutils 9.0.6ubuntu3
ubuntu/bsdutils 1:2.27.1-6ubuntu3.3
ubuntu/btrfs-tools 4.4-1ubuntu1
ubuntu/build-essential 12.1ubuntu2
ubuntu/bzip2-doc 1.0.6-8
ubuntu/bzip2 1.0.6-8
ubuntu/ca-certificates-java 20160321
ubuntu/ca-certificates 20170717~16.04.1
ubuntu/cdbs 0.4.130ubuntu2
ubuntu/coreutils 8.25-2ubuntu3~16.04
ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.5
ubuntu/cpp 4:5.3.1-1ubuntu1
ubuntu/cron 3.0pl1-128ubuntu2
ubuntu/curl 7.47.0-1ubuntu2.4
ubuntu/dash 0.5.8-2.1ubuntu2
ubuntu/dbus 1.10.6-1ubuntu3.3
ubuntu/debconf 1.5.58ubuntu1
ubuntu/debhelper 9.20160115ubuntu3
ubuntu/debianutils 4.7
ubuntu/default-jre-headless 2:1.8-56ubuntu2
ubuntu/default-jre 2:1.8-56ubuntu2
ubuntu/dh-python 2.20151103ubuntu1.1
ubuntu/dh-strip-nondeterminism 0.015-1
ubuntu/dh-translations 129
ubuntu/diffutils 1:3.3-3
ubuntu/distro-info-data 0.28ubuntu0.5
ubuntu/dpkg-dev 1.18.4ubuntu1.2
ubuntu/dpkg-sig 0.13.1 nmu2
ubuntu/dpkg 1.18.4ubuntu1.2
ubuntu/e2fslibs 1.42.13-1ubuntu1
ubuntu/e2fsprogs 1.42.13-1ubuntu1
ubuntu/fakeroot 1.20.2-1ubuntu1
ubuntu/file 1:5.25-2ubuntu1
ubuntu/findutils 4.6.0 git 20160126-2
ubuntu/fontconfig-config 2.11.94-0ubuntu1.1
ubuntu/fontconfig 2.11.94-0ubuntu1.1
ubuntu/fonts-dejavu-core 2.35-1
ubuntu/fonts-dejavu-extra 2.35-1
ubuntu/g -5 5.4.0-6ubuntu1~16.04.5
ubuntu/g 4:5.3.1-1ubuntu1
ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.5
ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.5
ubuntu/gcc-6-base 6.0.1-0ubuntu1
ubuntu/gcc 4:5.3.1-1ubuntu1
ubuntu/gettext-base 0.19.7-2ubuntu3
ubuntu/gettext 0.19.7-2ubuntu3
ubuntu/gfortran-5 5.4.0-6ubuntu1~16.04.5
ubuntu/gfortran 4:5.3.1-1ubuntu1
ubuntu/gir1.2-glib-2.0 1.46.0-3ubuntu1
ubuntu/git-man 1:2.7.4-0ubuntu1.3
ubuntu/git 1:2.7.4-0ubuntu1.3
ubuntu/gnupg 1.4.20-1ubuntu3.1
ubuntu/gpgv 1.4.20-1ubuntu3.1
ubuntu/grep 2.25-1~16.04.1
ubuntu/groff-base 1.22.3-7
ubuntu/gzip 1.6-4ubuntu1
ubuntu/hdfview 2.9-5
ubuntu/hicolor-icon-theme 0.15-0ubuntu1
ubuntu/hostname 3.16ubuntu2
ubuntu/ifupdown 0.8.10ubuntu1.2
ubuntu/init-system-helpers 1.29ubuntu4
ubuntu/init 1.29ubuntu4
ubuntu/initscripts 2.88dsf-59.3ubuntu2
ubuntu/insserv 1.14.0-5ubuntu3
ubuntu/intltool-debian 0.35.0 20060710.4
ubuntu/intltool 0.51.0-2
ubuntu/iproute2 4.3.0-1ubuntu3.16.04.1
ubuntu/iptables 1.6.0-2ubuntu3
ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.7
ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.7
ubuntu/iso-codes 3.65-1
ubuntu/java-common 0.56ubuntu2
ubuntu/java-wrappers 0.1.28
ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2
ubuntu/less 481-2.1ubuntu0.2
ubuntu/libacl1 2.2.52-3
ubuntu/libaec0 0.3.2-1
ubuntu/libalgorithm-diff-perl 1.19.03-1
ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libapparmor1 2.10.95-0ubuntu2.7
ubuntu/libapt-inst2.0 1.2.24
ubuntu/libapt-pkg5.0 1.2.24
ubuntu/libarchive-zip-perl 1.56-2
ubuntu/libasan2 5.4.0-6ubuntu1~16.04.5
ubuntu/libwww-robotrules-perl 6.01-1
ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libasound2-data 1.1.0-0ubuntu1
ubuntu/libasound2 1.1.0-0ubuntu1
ubuntu/libasprintf-dev 0.19.7-2ubuntu3
ubuntu/libasprintf0v5 0.19.7-2ubuntu3
ubuntu/libasyncns0 0.8-5build1
ubuntu/libatk1.0-0 2.18.0-1
ubuntu/libatk1.0-data 2.18.0-1
ubuntu/libatm1 1:2.5.1-1.5
ubuntu/libatomic1 5.4.0-6ubuntu1~16.04.5
ubuntu/libattr1 1:2.4.47-2
ubuntu/libaudit-common 1:2.4.5-1ubuntu2
ubuntu/libaudit1 1:2.4.5-1ubuntu2
ubuntu/libauthen-sasl-perl 2.1600-1
ubuntu/libavahi-client3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common-data 0.6.32~rc dfsg-1ubuntu2
ubuntu/libavahi-common3 0.6.32~rc dfsg-1ubuntu2
ubuntu/libblas-common 3.6.0-2ubuntu2
ubuntu/libblas-dev 3.6.0-2ubuntu2
ubuntu/libblas3 3.6.0-2ubuntu2
ubuntu/libblkid1 2.27.1-6ubuntu3.3
ubuntu/libbsd0 0.8.2-1
ubuntu/libbz2-1.0 1.0.6-8
ubuntu/libbz2-dev 1.0.6-8
ubuntu/libc-bin 2.23-0ubuntu9
ubuntu/libc-dev-bin 2.23-0ubuntu9
ubuntu/libc6-dev 2.23-0ubuntu9
ubuntu/libc6 2.23-0ubuntu9
ubuntu/libcairo2 1.14.6-1
ubuntu/libcap-ng0 0.7.7-1
ubuntu/libcap2-bin 1:2.24-12
ubuntu/libcap2 1:2.24-12
ubuntu/libcc1-0 5.4.0-6ubuntu1~16.04.5
ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.5
ubuntu/libcomerr2 1.42.13-1ubuntu1
ubuntu/libconfig-file-perl 1.50-3
ubuntu/libcroco3 0.6.11-1
ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
ubuntu/libcups2 2.1.3-4ubuntu0.3
ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.4
ubuntu/libcurl3 7.47.0-1ubuntu2.4
ubuntu/libdatrie1 0.2.10-2
ubuntu/libdb5.3 5.3.28-11
ubuntu/libdbus-1-3 1.10.6-1ubuntu3.3
ubuntu/libdbus-glib-1-2 0.106-1
ubuntu/libdebconfclient0 0.198ubuntu1
ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libdpkg-perl 1.18.4ubuntu1.2
ubuntu/libdrm-amdgpu1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-intel1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-nouveau2 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm-radeon1 2.4.76-1~ubuntu16.04.1
ubuntu/libdrm2 2.4.76-1~ubuntu16.04.1
ubuntu/libedit2 3.1-20150325-1ubuntu2
ubuntu/libelf1 0.165-3ubuntu1
ubuntu/libencode-locale-perl 1.05-1
ubuntu/liberror-perl 0.17-1.2
ubuntu/libexpat1-dev 2.1.0-7ubuntu0.16.04.3
ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.3
ubuntu/libfakeroot 1.20.2-1ubuntu1
ubuntu/libfdisk1 2.27.1-6ubuntu3.3
ubuntu/libffi6 3.2.1-4
ubuntu/libfile-basedir-perl 0.07-1
ubuntu/libfile-desktopentry-perl 0.22-1
ubuntu/libfile-fcntllock-perl 0.22-3
ubuntu/libfile-listing-perl 6.04-1
ubuntu/libfile-mimeinfo-perl 0.27-1
ubuntu/libfile-stripnondeterminism-perl 0.015-1
ubuntu/libflac8 1.3.1-4
ubuntu/libfont-afm-perl 1.20-1
ubuntu/libfontconfig1 2.11.94-0ubuntu1.1
ubuntu/libfontenc1 1:1.1.3-1
ubuntu/libfreetype6 2.6.1-0.1ubuntu2.3
ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libgcc1 1:6.0.1-0ubuntu1
ubuntu/libgcrypt20 1.6.5-2ubuntu0.3
ubuntu/libgdbm3 1.8.3-13.1
ubuntu/libgdk-pixbuf2.0-0 2.32.2-1ubuntu1.3
ubuntu/libgdk-pixbuf2.0-common 2.32.2-1ubuntu1.3
ubuntu/libgettextpo-dev 0.19.7-2ubuntu3
ubuntu/libgettextpo0 0.19.7-2ubuntu3
ubuntu/libgfortran-5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libgfortran3 5.4.0-6ubuntu1~16.04.5
ubuntu/libgif7 5.1.4-0.3~16.04
ubuntu/libgirepository-1.0-1 1.46.0-3ubuntu1
ubuntu/libgl1-mesa-dri 17.0.7-0ubuntu0.16.04.2
ubuntu/libgl1-mesa-glx 17.0.7-0ubuntu0.16.04.2
ubuntu/libglapi-mesa 17.0.7-0ubuntu0.16.04.2
ubuntu/libglib2.0-0 2.48.2-0ubuntu1
ubuntu/libglib2.0-data 2.48.2-0ubuntu1
ubuntu/libgmp10 2:6.1.0 dfsg-2
ubuntu/libgnutls30 3.4.10-4ubuntu1.4
ubuntu/libgomp1 5.4.0-6ubuntu1~16.04.5
ubuntu/libgpg-error0 1.21-2ubuntu1
ubuntu/libgraphite2-3 1.3.10-0ubuntu0.16.04.1
ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2
ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libgtk2.0-0 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-bin 2.24.30-1ubuntu1.16.04.2
ubuntu/libgtk2.0-common 2.24.30-1ubuntu1.16.04.2
ubuntu/libharfbuzz0b 1.0.1-1ubuntu0.1
ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libhdf4-0 4.2.10-3.2
ubuntu/libhdf5-10 1.8.16 docs-4ubuntu1
ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libhogweed4 3.2-1ubuntu0.16.04.1
ubuntu/libhtml-form-perl 6.03-1
ubuntu/libhtml-format-perl 2.11-2
ubuntu/libhtml-parser-perl 3.72-1
ubuntu/libhtml-tagset-perl 3.20-2
ubuntu/libhtml-tree-perl 5.03-2
ubuntu/libhttp-cookies-perl 6.01-1
ubuntu/libhttp-daemon-perl 6.01-1
ubuntu/libhttp-date-perl 6.02-1
ubuntu/libhttp-message-perl 6.11-1
ubuntu/libhttp-negotiate-perl 6.00-2
ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libice-dev 2:1.0.9-1
ubuntu/libice6 2:1.0.9-1
ubuntu/libicu55 55.1-7ubuntu0.3
ubuntu/libidn11 1.32-3ubuntu1.2
ubuntu/libio-html-perl 1.001-1
ubuntu/libio-socket-ssl-perl 2.024-1
ubuntu/libipc-system-simple-perl 1.25-3
ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.8
ubuntu/libisl15 0.16.1-1
ubuntu/libitm1 5.4.0-6ubuntu1~16.04.5
ubuntu/libjbig0 2.1-3.1
ubuntu/libjgraph-java 5.12.4.2 dfsg-2
ubuntu/libjhdf4-java 2.9-5
ubuntu/libjhdf4-jni 2.9-5
ubuntu/libjhdf5-java 2.9-5
ubuntu/libjhdf5-jni 2.9-5
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 1.4.2-0ubuntu3
ubuntu/libjpeg-turbo8 1.4.2-0ubuntu3
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjson-c2 0.11-4ubuntu2
ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2
ubuntu/libkeyutils1 1.5.9-8ubuntu1
ubuntu/libkmod2 22-1ubuntu5
ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2
ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2
ubuntu/liblapack-dev 3.6.0-2ubuntu2
ubuntu/liblapack3 3.6.0-2ubuntu2
ubuntu/liblcms2-2 2.6-3ubuntu2
ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.2
ubuntu/libllvm4.0 1:4.0-1ubuntu1~16.04.2
ubuntu/liblsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/liblwp-mediatypes-perl 6.02-1
ubuntu/liblwp-protocol-https-perl 6.06-2
ubuntu/liblz4-1 0.0~r131-2ubuntu2
ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
ubuntu/liblzo2-2 2.08-1.2
ubuntu/libmagic1 1:5.25-2ubuntu1
ubuntu/libmail-sendmail-perl 0.79.16-1
ubuntu/libmailtools-perl 2.13-1
ubuntu/libmnl0 1.0.3-5
ubuntu/libmount1 2.27.1-6ubuntu3.3
ubuntu/libmpc3 1.0.3-1
ubuntu/libmpdec2 2.4.2-1
ubuntu/libmpfr4 3.1.4-1
ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.5
ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
ubuntu/libncurses5 6.0 20160213-1ubuntu1
ubuntu/libncursesw5 6.0 20160213-1ubuntu1
ubuntu/libnet-dbus-perl 1.1.0-3build1
ubuntu/libnet-http-perl 6.09-1
ubuntu/libnet-smtp-ssl-perl 1.03-1
ubuntu/libnet-ssleay-perl 1.72-1build1
ubuntu/libnettle6 3.2-1ubuntu0.16.04.1
ubuntu/libnfnetlink0 1.0.1-3
ubuntu/libnspr4 2:4.13.1-0ubuntu0.16.04.1
ubuntu/libnss3-nssdb 2:3.28.4-0ubuntu0.16.04.3
ubuntu/libnss3 2:3.28.4-0ubuntu0.16.04.3
ubuntu/libogg0 1.3.2-1
ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.1
ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2
ubuntu/libpam-modules 1.1.8-3.2ubuntu2
ubuntu/libpam-runtime 1.1.8-3.2ubuntu2
ubuntu/libpam0g 1.1.8-3.2ubuntu2
ubuntu/libpango-1.0-0 1.38.1-1
ubuntu/libpangocairo-1.0-0 1.38.1-1
ubuntu/libpangoft2-1.0-0 1.38.1-1
ubuntu/libpaper-utils 1.1.24 nmu4ubuntu1
ubuntu/libpaper1 1.1.24 nmu4ubuntu1
ubuntu/libpciaccess0 0.13.4-1
ubuntu/libpcre16-3 2:8.38-3.1
ubuntu/libpcre3-dev 2:8.38-3.1
ubuntu/libpcre32-3 2:8.38-3.1
ubuntu/libpcre3 2:8.38-3.1
ubuntu/libpcrecpp0v5 2:8.38-3.1
ubuntu/libpcsclite1 1.8.14-1ubuntu1.16.04.1
ubuntu/libperl5.22 5.22.1-9
ubuntu/libpipeline1 1.4.1-2
ubuntu/libpixman-1-0 0.33.6-1
ubuntu/libpng12-0 1.2.54-1ubuntu1
ubuntu/libpng12-dev 1.2.54-1ubuntu1
ubuntu/libpopt0 1.16-10
ubuntu/libprocps4 2:3.3.10-4ubuntu2.3
ubuntu/libpthread-stubs0-dev 0.3-4
ubuntu/libpulse0 1:8.0-0ubuntu3.4
ubuntu/libpython-dev 2.7.11-1
ubuntu/libpython-stdlib 2.7.11-1
ubuntu/libpython2.7-dev 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7-minimal 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7-stdlib 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython2.7 2.7.12-1ubuntu0~16.04.1
ubuntu/libpython3-dev 3.5.1-3
ubuntu/libpython3-stdlib 3.5.1-3
ubuntu/libpython3.5-dev 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5-minimal 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5-stdlib 3.5.2-2ubuntu0~16.04.3
ubuntu/libpython3.5 3.5.2-2ubuntu0~16.04.3
ubuntu/libquadmath0 5.4.0-6ubuntu1~16.04.5
ubuntu/libreadline-dev 6.3-8ubuntu2
ubuntu/libreadline6-dev 6.3-8ubuntu2
ubuntu/libreadline6 6.3-8ubuntu2
ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
ubuntu/libsasl2-2 2.1.26.dfsg1-14build1
ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14build1
ubuntu/libsasl2-modules 2.1.26.dfsg1-14build1
ubuntu/libseccomp2 2.2.3-3ubuntu3
ubuntu/libselinux1 2.4-3build2
ubuntu/libsemanage-common 2.3-1build3
ubuntu/libsemanage1 2.3-1build3
ubuntu/libsensors4 1:3.4.0-2
ubuntu/libsepol1 2.4-2
ubuntu/libsigsegv2 2.10-4
ubuntu/libsm-dev 2:1.2.2-1
ubuntu/libsm6 2:1.2.2-1
ubuntu/libsmartcols1 2.27.1-6ubuntu3.3
ubuntu/libsndfile1 1.0.25-10ubuntu0.16.04.1
ubuntu/libsqlite3-0 3.11.0-1ubuntu1
ubuntu/libss2 1.42.13-1ubuntu1
ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.8
ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.5
ubuntu/libstdc 6 5.4.0-6ubuntu1~16.04.5
ubuntu/libsys-hostname-long-perl 1.5-1
ubuntu/libsystemd0 229-4ubuntu21
ubuntu/libsz2 0.3.2-1
ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.2
ubuntu/libtcl8.6 8.6.5 dfsg-2
ubuntu/libtext-iconv-perl 1.7-5build4
ubuntu/libthai-data 0.1.24-2
ubuntu/libthai0 0.1.24-2
ubuntu/libtie-ixhash-perl 1.23-2
ubuntu/libtiff5 4.0.6-1ubuntu0.2
ubuntu/libtimedate-perl 2.3000-2
ubuntu/libtinfo-dev 6.0 20160213-1ubuntu1
ubuntu/libtinfo5 6.0 20160213-1ubuntu1
ubuntu/libtk8.6 8.6.5-1
ubuntu/libtsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/libtxc-dxtn-s2tc0 0~git20131104-1.1
ubuntu/libubsan0 5.4.0-6ubuntu1~16.04.5
ubuntu/libudev1 229-4ubuntu21
ubuntu/libunistring0 0.9.3-5.2ubuntu1
ubuntu/liburi-perl 1.71-1
ubuntu/libusb-0.1-4 2:0.1.12-28
ubuntu/libustr-1.0-1 1.0.4-5
ubuntu/libuuid1 2.27.1-6ubuntu3.3
ubuntu/libvorbis0a 1.3.5-3
ubuntu/libvorbisenc2 1.3.5-3
ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
ubuntu/libwrap0 7.6.q-25
ubuntu/libwww-perl 6.15-1
ubuntu/libx11-6 2:1.6.3-1ubuntu2
ubuntu/libx11-data 2:1.6.3-1ubuntu2
ubuntu/libx11-dev 2:1.6.3-1ubuntu2
ubuntu/libx11-doc 2:1.6.3-1ubuntu2
ubuntu/libx11-protocol-perl 0.56-7
ubuntu/libx11-xcb1 2:1.6.3-1ubuntu2
ubuntu/libxau-dev 1:1.0.8-1
ubuntu/libxau6 1:1.0.8-1
ubuntu/libxaw7 2:1.0.13-1
ubuntu/libxcb-dri2-0 1.11.1-1ubuntu1
ubuntu/libxcb-dri3-0 1.11.1-1ubuntu1
ubuntu/libxcb-glx0 1.11.1-1ubuntu1
ubuntu/libxcb-present0 1.11.1-1ubuntu1
ubuntu/libxcb-render0 1.11.1-1ubuntu1
ubuntu/libxcb-shape0 1.11.1-1ubuntu1
ubuntu/libxcb-shm0 1.11.1-1ubuntu1
ubuntu/libxcb-sync1 1.11.1-1ubuntu1
ubuntu/libxcb1-dev 1.11.1-1ubuntu1
ubuntu/libxcb1 1.11.1-1ubuntu1
ubuntu/libxcomposite1 1:0.4.4-1
ubuntu/libxcursor1 1:1.1.14-1
ubuntu/libxdamage1 1:1.1.4-2
ubuntu/libxdmcp-dev 1:1.1.2-1.1
ubuntu/libxdmcp6 1:1.1.2-1.1
ubuntu/libxext6 2:1.3.3-1
ubuntu/libxfixes3 1:5.0.1-2
ubuntu/libxft2 2.3.2-1
ubuntu/libxi6 2:1.7.6-1
ubuntu/libxinerama1 2:1.1.3-1
ubuntu/libxml-parser-perl 2.44-1build1
ubuntu/libxml-twig-perl 1:3.48-1
ubuntu/libxml-xpathengine-perl 0.13-1
ubuntu/libxml2 2.9.3 dfsg1-1ubuntu0.3
ubuntu/libxmu6 2:1.1.2-2
ubuntu/libxmuu1 2:1.1.2-2
ubuntu/libxpm4 1:3.5.11-1ubuntu0.16.04.1
ubuntu/libxrandr2 2:1.5.0-1
ubuntu/libxrender1 1:0.9.9-0ubuntu1
ubuntu/libxshmfence1 1.2-1
ubuntu/libxss1 1:1.2.2-1
ubuntu/libxt-dev 1:1.1.5-0ubuntu1
ubuntu/libxt6 1:1.1.5-0ubuntu1
ubuntu/libxtables11 1.6.0-2ubuntu3
ubuntu/libxtst6 2:1.2.2-1
ubuntu/libxv1 2:1.0.10-1
ubuntu/libxxf86dga1 2:1.1.4-1
ubuntu/libxxf86vm1 1:1.1.4-1
ubuntu/linux-libc-dev 4.4.0-98.121
ubuntu/login 1:4.2-3.1ubuntu5.3
ubuntu/lsb-base 9.20160110ubuntu0.2
ubuntu/lsb-release 9.20160110ubuntu0.2
ubuntu/lynx-common 2.8.9dev8-4ubuntu1
ubuntu/lynx 2.8.9dev8-4ubuntu1
ubuntu/m4 1.4.17-5
ubuntu/make 4.1-6
ubuntu/makedev 2.3.1-93ubuntu2~ubuntu16.04.1
ubuntu/man-db 2.7.5-1
ubuntu/manpages-dev 4.04-2
ubuntu/manpages 4.04-2
ubuntu/mawk 1.3.3-17ubuntu2
ubuntu/mime-support 3.59ubuntu1
ubuntu/mount 2.27.1-6ubuntu3.3
ubuntu/multiarch-support 2.23-0ubuntu9
ubuntu/ncurses-base 6.0 20160213-1ubuntu1
ubuntu/ncurses-bin 6.0 20160213-1ubuntu1
ubuntu/netbase 5.3
ubuntu/openjdk-8-jdk-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jdk 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre-headless 8u131-b11-2ubuntu1.16.04.3
ubuntu/openjdk-8-jre 8u131-b11-2ubuntu1.16.04.3
ubuntu/openssh-client 1:7.2p2-4ubuntu2.2
ubuntu/openssl 1.0.2g-1ubuntu4.8
ubuntu/passwd 1:4.2-3.1ubuntu5.3
ubuntu/patch 2.7.5-1
ubuntu/perl-base 5.22.1-9
ubuntu/perl-modules-5.22 5.22.1-9
ubuntu/perl 5.22.1-9
ubuntu/po-debconf 1.0.19
ubuntu/procps 2:3.3.10-4ubuntu2.3
ubuntu/python-apt-common 1.1.0~beta1build1
ubuntu/python-dev 2.7.11-1
ubuntu/python-minimal 2.7.11-1
ubuntu/python-pip-whl 8.1.1-2ubuntu0.4
ubuntu/python-pkg-resources 20.7.0-1
ubuntu/python-scour 0.32-1
ubuntu/python-setuptools 20.7.0-1
ubuntu/python-six 1.10.0-3
ubuntu/python2.7-dev 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7-minimal 2.7.12-1ubuntu0~16.04.1
ubuntu/python2.7 2.7.12-1ubuntu0~16.04.1
ubuntu/python3-apt 1.1.0~beta1build1
ubuntu/python3-dbus 1.2.0-3
ubuntu/python3-dev 3.5.1-3
ubuntu/python3-gi 3.20.0-0ubuntu1
ubuntu/python3-minimal 3.5.1-3
ubuntu/python3-pip 8.1.1-2ubuntu0.4
ubuntu/python3-pkg-resources 20.7.0-1
ubuntu/python3-pycurl 7.43.0-1ubuntu1
ubuntu/python3-setuptools 20.7.0-1
ubuntu/python3-software-properties 0.96.20.7
ubuntu/python3-wheel 0.29.0-1
ubuntu/python3.5-dev 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5-minimal 3.5.2-2ubuntu0~16.04.3
ubuntu/python3.5 3.5.2-2ubuntu0~16.04.3
ubuntu/python3 3.5.1-3
ubuntu/python 2.7.11-1
ubuntu/r-base-core 3.2.5-1xenial
ubuntu/r-base-dev 3.2.5-1xenial
ubuntu/r-doc-html 3.4.2-2xenial2
ubuntu/readline-common 6.3-8ubuntu2
ubuntu/rename 0.20-4
ubuntu/rsync 3.1.1-3ubuntu1
ubuntu/samtools 0.1.19-1ubuntu1
ubuntu/sed 4.2.2-7
ubuntu/sensible-utils 0.0.9
ubuntu/sgml-base 1.26 nmu4ubuntu1
ubuntu/shared-mime-info 1.5-2ubuntu0.1
ubuntu/software-properties-common 0.96.20.7
ubuntu/systemd-sysv 229-4ubuntu21
ubuntu/systemd 229-4ubuntu21
ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
ubuntu/tar 1.28-2.1ubuntu0.1
ubuntu/tcpd 7.6.q-25
ubuntu/tzdata 2016j-0ubuntu0.16.04
ubuntu/ubuntu-keyring 2012.05.19
ubuntu/ucf 3.0036
ubuntu/unattended-upgrades 0.90ubuntu0.8
ubuntu/unzip 6.0-20ubuntu1
ubuntu/util-linux 2.27.1-6ubuntu3.3
ubuntu/wget 1.17.1-1ubuntu1.3
ubuntu/x11-common 1:7.7 13ubuntu3
ubuntu/x11-utils 7.7 3
ubuntu/x11-xserver-utils 7.7 7
ubuntu/x11proto-core-dev 7.0.31-1~ubuntu16.04.2
ubuntu/x11proto-input-dev 2.3.1-1
ubuntu/x11proto-kb-dev 1.0.7-0ubuntu1
ubuntu/xauth 1:1.0.9-1ubuntu2
ubuntu/xdg-user-dirs 0.15-2ubuntu6
ubuntu/xdg-utils 1.1.1-1ubuntu1.16.04.1
ubuntu/xml-core 0.13 nmu2
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xtrans-dev 1.3.5-1
ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
ubuntu/zip 3.0-11
ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.1
ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.1

pycparser 2.10
Cython 0.26
DataShape 0.4.4
Jinja2 2.7.3
Keras 2.1.4
Markdown 2.6.9
MarkupSafe 0.23
Pillow 2.7.0
PyGObject 3.20.0
PySocks 1.6.7
PyVCF 0.6.8
PyYAML 3.11
PyYAML 3.12
SocksiPy-branch 1.01
Theano 0.9.0
Werkzeug 0.10.1
Werkzeug 0.12.2
XlsxWriter 0.6.7
abstract_rendering 0.5.1
argcomplete 0.8.4
argparse 1.2.1
asn1crypto 0.22.0
astroid 1.5.3
backports.functools-lru-cache 1.4
backports.ssl-match-hostname 3.4.0.2
bcolz 0.8.1
beautifulsoup4 4.3.2
binstar 0.10.1
biopython 1.70
bitarray 0.8.1
bitstring 3.1.5
blaze 0.7.3
bleach 1.5.0
blz 0.6.2
boto 2.48.0
cdecimal 2.3
certifi 14.5.14
certifi 2016.2.28
certifi 2017.07.27.1
cffi 0.9.2
cffi 1.10.0
chardet 3.0.4
clyent 0.3.4
colorama 0.3.3
conda-build 1.11.0
conda-env 2.1.3
conda 3.10.0
conda 4.3.30
configobj 5.0.6
coverage 3.7.1
cryptography 0.8
cryptography 2.0.3
cycler 0.10.0
cytoolz 0.7.2
decorator 3.4.0
docopt 0.6.1
docutils 0.12
enum34 1.1.6
et-xmlfile 1.0.1
fastcache 1.0.2
funcsigs 0.4
futures 2.2.0
gatkpythonpackages 0.1
greenlet 0.4.5
grin 1.2.1
h5py 2.4.0
h5py 2.7.1
html5lib 0.9999999
idna 2.6
illuminate 0.6.3.1
itsdangerous 0.24
jdcal 1.0
jedi 0.8.1
joblib 0.11
jsonschema 2.4.0
lazy-object-proxy 1.3.1
logilab-common 1.4.1
matplotlib 1.4.3
matplotlib 2.1.0
mistune 0.5.1
mock 1.0.1
mock 2.0.0
multipledispatch 0.4.7
networkx 1.9.1
nose 1.3.3
numba 0.17.0
numexpr 2.3.1
numpy 1.13.3
numpy 1.9.2
oauth2client 1.2
oauth2client 2.2.0
odo 0.3.1
openpyxl 2.4.9
ordereddict 1.1
pandas 0.18.1
pandas 0.21.0
patsy 0.3.0
patsy 0.4.1
pep8 1.6.2
pip 6.0.8
pip 8.1.1
pip 9.0.1
ply 3.4
protobuf 3.5.0.post1
psutil 2.2.1
ptyprocess 0.4
py 1.4.26
pyBigWig 0.3.7
pyOpenSSL 0.14
pyOpenSSL 17.2.0
pyasn1 0.1.7
pybedtools 0.6.4
pycosat 0.6.1
pycosat 0.6.2
pycparser 2.18
pycrypto 2.6.1
pycurl 7.19.5.1
pycurl 7.43.0
pyfasta 0.5.2
pylint 1.3.1
pymc3 3.1
pyparsing 2.0.3
pyparsing 2.2.0
pysam 0.13
pysam 0.9.1
pytest 2.6.4
python-apt 1.1.0.b1
python-dateutil 2.4.1
python-dateutil 2.6.1
pytz 2015.2
pytz 2017.3
pyzmq 14.5.0
redis 2.10.3
requests 2.18.4
requests 2.6.0
rope 0.9.4
rsa 3.1.4
ruamel_yaml 0.11.14
runipy 0.1.3
scikit-learn 0.15.2
scikit-learn 0.19.1
scipy 0.15.1
scipy 1.0.0
scour 0.32
setuptools 20.7.0
setuptools 36.4.0
setuptools 36.5.0.post20170921
simplejson 3.5.2
simplejson 3.6.5
singledispatch 3.4.0.3
six 1.10.0
six 1.11.0
six 1.9.0
tables 3.1.1
tensorflow-tensorboard 0.4.0rc3
tensorflow 1.4.0
toolz 0.7.1
tqdm 4.19.4
ujson 1.33
unattended-upgrades 0.1
unicodecsv 0.9.4
unittest2 0.5.1
urllib3 1.22
wheel 0.29.0
wrapt 1.10.11
wsgiref 0.1.2
xlrd 0.9.3
xlwt 0.7.5
xmltodict 0.11.0

com.sun:jaxb-impl 2.2.3-1
com.sun:jce 1.8.0_131
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.wendykierp:JTransforms 3.1
11:11 2.3.2
US_export_policy:US_export_policy *
annotations:annotations 2.0.1
aopalliance:aopalliance 1.0
api-common:api-common 1.1.0
args4j:args4j 2.0.23
arpack_combined_all:arpack_combined_all 0.1
asm:asm 3.1
barclay:barclay 2.1.0
biz.aQute.bnd:biz.aQute.bndlib 3.2.0
bsh:bsh 2.0b4
cglib:cglib 2.2.1-v20090111
charsets:charsets *
cldrdata:cldrdata *
com.amazonaws:aws-java-sdk-core 1.11.6
com.amazonaws:aws-java-sdk-kms 1.11.6
com.amazonaws:aws-java-sdk-s3 1.11.6
com.beust:jcommander 1.12
com.cedarsoftware:java-util 1.9.0
com.cedarsoftware:json-io 2.5.1
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware.kryo:kryo 2.20
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.07
com.esotericsoftware:kryo-shaded 3.0.3
com.esotericsoftware:kryo 3.0.3
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.10.1
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-annotations 2.6.5
com.fasterxml.jackson.core:jackson-annotations 2.6.6
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.2.3
com.fasterxml.jackson.core:jackson-core 2.4.0
com.fasterxml.jackson.core:jackson-core 2.6.6
com.fasterxml.jackson.core:jackson-core 2.8.8
com.fasterxml.jackson.core:jackson-databind 2.4.0
com.fasterxml.jackson.core:jackson-databind 2.6.5
com.fasterxml.jackson.core:jackson-databind 2.6.6
com.fasterxml.jackson.module.jackson.module.scala:11 2.6.5
com.fasterxml.jackson.module:jackson-module-paranamer 2.6.5
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.google.api-client:google-api-client-jackson2 1.20.0
com.google.api-client:google-api-client-java6 1.20.0
com.google.api-client:google-api-client 1.22.0
com.google.apis:google-api-services-storage v1-rev108-1.22.0
com.google.auth:google-auth-library-credentials 0.7.0
com.google.auth:google-auth-library-oauth2-http 0.7.0
com.google.auto.service:auto-service 1.0-rc2
com.google.auto.value:auto-value 1.2
com.google.auto:auto-common 1.0-SNAPSHOT
com.google.cloud.bigdataoss:gcs-connector 1.6.3-hadoop2
com.google.cloud.bigdataoss:gcsio 1.6.3
com.google.cloud.bigdataoss:util-hadoop 1.6.3-hadoop2
com.google.cloud.bigdataoss:util 1.6.3
com.google.cloud:google-cloud-core-http 1.2.3
com.google.cloud:google-cloud-core 1.2.3
com.google.cloud:google-cloud-storage 1.2.3
com.google.code.gson:gson 2.7
com.google.guava:guava-jdk5 17.0
com.google.guava:guava 11.0.2
com.google.guava:guava 14.0.1
com.google.guava:guava 18.0
com.google.guava:guava 19.0
com.google.guava:guava 20.0
com.google.http-client:google-http-client-appengine 1.21.0
com.google.http-client:google-http-client-jackson2 1.22.0
com.google.http-client:google-http-client-jackson 1.21.0
com.google.http-client:google-http-client 1.22.0
com.google.inject.servlet:guice-servlet 3.0
com.google.inject:guice 3.0
com.google.jimfs:jimfs 1.1
com.google.oauth-client:google-oauth-client-java6 1.20.0
com.google.oauth-client:google-oauth-client 1.22.0
com.google.protobuf:protobuf-java-util 3.3.0
com.google.protobuf:protobuf-java 3.0.0-beta-1
com.google.protobuf:protobuf-java 3.3.0
com.googlecode.jatl:jatl 0.2.2
com.googlecode.javaewah:JavaEWAH 0.7.9
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.intel:genomicsdb 0.9.2-proto-3.0.0-beta-1 uuid-static
com.jamesmurty.utils:java-xmlbuilder 1.0
com.jcraft:jsch 0.1.53
com.jcraft:jsch 0.1.54
com.netflix.servo#servo-core:servo-core 0.10.0
com.netflix.servo#servo-internal:servo-internal 0.10.0
com.nimbusds:nimbus-jose-jwt 3.9
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.4.0
com.squareup.okio:okio 1.4.0
com.sun.jersey.contribs:jersey-guice 1.9
com.sun.jersey:jersey-client 1.9
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.sun:activation 1.1.1
com.sun:sunec 1.8.0_131
com.sun:sunjce_provider 1.8.0_131
com.sun:sunpkcs11 1.8.0_131
com.thoughtworks.paranamer:paranamer 2.7
com.thoughtworks.xstream:xstream 1.4.7
com.twitter:11 0.8.0
com.twitter:chill-java 0.8.0
com.univocity:univocity-parsers 2.2.1
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.10
commons-codec:commons-codec 1.6
commons-codec:commons-codec 1.9
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-daemon:commons-daemon 1.0.13
commons-digester:commons-digester 1.8
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-io:commons-io 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
de.javakaffee:kryo-serializers 0.41
de.ruedigermoeller:fst 2.50
dnsns:dnsns *
dt:dt *
fastutil:fastutil 7.0.6
gatk-bwamem-jni:gatk-bwamem-jni 1.0.4
gatk-fermilite-jni:gatk-fermilite-jni 1.1.0
gatk-native-bindings:gatk-native-bindings 1.0.0
gax:gax 1.4.2
gettext:gettext *
gkl:gkl 0.8.5
google-api-services-storage-v1-rev108:google-api-services-storage-v1-rev108 1.22.0
gov.nist.math.jama:gov.nist.math.jama 1.1.1
gradle-announce:gradle-announce 3.1
gradle-antlr:gradle-antlr 3.1
gradle-base-services-groovy:gradle-base-services-groovy 3.1
gradle-base-services:gradle-base-services 3.1
gradle-build-comparison:gradle-build-comparison 3.1
gradle-build-init:gradle-build-init 3.1
gradle-cli:gradle-cli 3.1
gradle-code-quality:gradle-code-quality 3.1
gradle-composite-builds:gradle-composite-builds 3.1
gradle-core:gradle-core 3.1
gradle-dependency-management:gradle-dependency-management 3.1
gradle-diagnostics:gradle-diagnostics 3.1
gradle-docs:gradle-docs 3.1
gradle-download-task:gradle-download-task 2.1.0
gradle-ear:gradle-ear 3.1
gradle-git-version:gradle-git-version 0.5.1
gradle-ide-native:gradle-ide-native 3.1
gradle-ide-play:gradle-ide-play 3.1
gradle-ide:gradle-ide 3.1
gradle-installation-beacon:gradle-installation-beacon 3.1
gradle-ivy:gradle-ivy 3.1
gradle-jacoco:gradle-jacoco 3.1
gradle-javascript:gradle-javascript 3.1
gradle-jetty:gradle-jetty 3.1
gradle-jvm-services:gradle-jvm-services 3.1
gradle-language-groovy:gradle-language-groovy 3.1
gradle-language-java:gradle-language-java 3.1
gradle-language-jvm:gradle-language-jvm 3.1
gradle-language-native:gradle-language-native 3.1
gradle-language-scala:gradle-language-scala 3.1
gradle-logging:gradle-logging 3.1
gradle-maven:gradle-maven 3.1
gradle-messaging:gradle-messaging 3.1
gradle-model-core:gradle-model-core 3.1
gradle-model-groovy:gradle-model-groovy 3.1
gradle-native:gradle-native 3.1
gradle-open-api:gradle-open-api 3.1
gradle-osgi:gradle-osgi 3.1
gradle-platform-base:gradle-platform-base 3.1
gradle-platform-jvm:gradle-platform-jvm 3.1
gradle-platform-native:gradle-platform-native 3.1
gradle-platform-play:gradle-platform-play 3.1
gradle-plugin-development:gradle-plugin-development 3.1
gradle-plugin-use:gradle-plugin-use 3.1
gradle-plugins:gradle-plugins 3.1
gradle-process-services:gradle-process-services 3.1
gradle-publish:gradle-publish 3.1
gradle-reporting:gradle-reporting 3.1
gradle-resources-http:gradle-resources-http 3.1
gradle-resources-s3:gradle-resources-s3 3.1
gradle-resources-sftp:gradle-resources-sftp 3.1
gradle-resources:gradle-resources 3.1
gradle-scala:gradle-scala 3.1
gradle-script-kotlin:gradle-script-kotlin 0.3.2
gradle-signing:gradle-signing 3.1
gradle-task-cache-http:gradle-task-cache-http 3.1
gradle-test-kit:gradle-test-kit 3.1
gradle-testing-base:gradle-testing-base 3.1
gradle-testing-jvm:gradle-testing-jvm 3.1
gradle-testing-native:gradle-testing-native 3.1
gradle-tooling-api-builders:gradle-tooling-api-builders 3.1
gradle-tooling-api:gradle-tooling-api 3.1
gradle-ui:gradle-ui 3.1
gradle-versions-plugin:gradle-versions-plugin 0.12.0
gradle-wrapper:gradle-wrapper 3.1
groovy-all:groovy-all 2.4.7
groovy-backports-compat23:groovy-backports-compat23 2.4.4
hamcrest-core:hamcrest-core 1.3
hdf5-java-bindings:hdf5-java-bindings 1.1.0-hdf5_2.11.0
htsjdk:htsjdk 2.14.3
icedtea-sound:icedtea-sound *
io.dropwizard.metrics:metrics-core 3.1.2
io.dropwizard.metrics:metrics-graphite 3.1.2
io.dropwizard.metrics:metrics-json 3.1.2
io.dropwizard.metrics:metrics-jvm 3.1.2
io.netty:netty-all 4.0.43.Final
io.netty:netty 3.9.9.Final
jaccess:jaccess *
jackson-core-asl:jackson-core-asl 1.9.13
jackson-jaxrs:jackson-jaxrs 1.9.13
org.apache:ivy 2.4.0
jackson-mapper-asl:jackson-mapper-asl 1.9.13
jackson-xc:jackson-xc 1.9.13
jarhdf5:jarhdf5 2.11.0
java-getopt:java-getopt 1.0.13
javax.annotation:javax.annotation-api 1.2
javax.mail:mail 1.4.7
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
jaxb-api:jaxb-api 2.2.2
jcifs:jcifs 1.3.17
jcip-annotations:jcip-annotations 1.0
jcommander:jcommander 1.64
jconsole:jconsole *
jdtCompilerAdapter:jdtCompilerAdapter *
jgraph:jgraph *
jhdf:jhdf *
jhdf4obj:jhdf4obj *
jhdf5:jhdf5 *
jhdf5obj:jhdf5obj *
jhdfobj:jhdfobj *
jhdfview:jhdfview *
jline:jline 0.9.94
joda-time:joda-time 2.8.2
joda-time:joda-time 2.9.2
jsr305:jsr305 3.0.0
jsse:jsse 1.8.0_131
junit:junit 4.12
kotlin-reflect:kotlin-reflect 1.1.0-dev-2053
libintl:libintl *
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.17
lz4:lz4 1.3.0
management-agent:management-agent *
mx4j:mx4j 3.0.2
nashorn:nashorn 1.8.0_131-8u131-b11-2ubuntu1.16.04.3-b11
native-platform-freebsd-amd64:native-platform-freebsd-amd64 0.11
native-platform-freebsd-i386:native-platform-freebsd-i386 0.11
native-platform-linux-amd64:native-platform-linux-amd64 0.11
native-platform-linux-i386:native-platform-linux-i386 0.11
native-platform-osx-amd64:native-platform-osx-amd64 0.11
native-platform-osx-i386:native-platform-osx-i386 0.11
native-platform-windows-amd64:native-platform-windows-amd64 0.11
native-platform-windows-i386:native-platform-windows-i386 0.11
native-platform:native-platform 0.11
nekohtml:nekohtml 1.9.14
net.bytebuddy:byte-buddy-agent 1.7.4
net.bytebuddy:byte-buddy-dep 1.7.4
net.bytebuddy:byte-buddy 1.7.4
net.iharder:base64 2.3.8
net.java.dev.jets3t:jets3t 0.9.3
net.minidev:json-smart 1.1.1
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.4
ngs-java:ngs-java 1.2.4
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.5.3
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org.apache.avro:avro-ipc 1.7.7
org.apache.avro:avro-mapred 1.7.7
org.apache.avro:avro 1.8.0
org.apache.commons.beanutils:commons-beanutils 1.7.0
org.apache.commons:commons-collections4 4.1
org.apache.commons:commons-compress 1.8.1
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.5
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math 2.2
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.curator:curator-test 2.7.1
org.apache.directory.api:api-util 1.0.0-M20
org.apache.directory.api:api 1.0.0-M20
org.apache.directory.server:codec 2.0.0-M15
org.apache.directory.server:i18n 2.0.0-M15
org.apache.geronimo.specs:geronimo-annotation_1.0_spec 1.0
org.apache.hadoop.zookeeper:zookeeper 3.4.6
org.apache.hadoop:hadoop-annotations 2.8.2
org.apache.hadoop:hadoop-auth 2.8.2
org.apache.hadoop:hadoop-client 2.8.2
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org.apache.hadoop:hadoop-hdfs-client 2.8.2
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org.apache.hadoop:hadoop-mapreduce-client-app 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-common 2.8.2
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org.apache.hadoop:hadoop-mapreduce-client-shuffle 2.8.2
org.apache.hadoop:hadoop-minicluster 2.8.2
org.apache.hadoop:hadoop-yarn-api 2.8.2
org.apache.hadoop:hadoop-yarn-client 2.8.2
org.apache.hadoop:hadoop-yarn-common 2.8.2
org.apache.hadoop:hadoop-yarn-server-applicationhistoryservice 2.8.2
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org.apache.hadoop:hadoop-yarn-server-nodemanager 2.8.2
org.apache.hadoop:hadoop-yarn-server-resourcemanager 2.8.2
org.apache.hadoop:hadoop-yarn-server-tests 2.8.2
org.apache.hadoop:hadoop-yarn-server-web-proxy 2.8.2
org.apache.htrace:htrace-core4 4.0.1-incubating
org.apache.httpcomponents:httpclient 4.0.1
org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpclient 4.4.1
org.apache.httpcomponents:httpclient 4.5.2
org.apache.httpcomponents:httpcore 4.0.1
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.4
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.maven.wagon:wagon-file 2.4
org.apache.maven.wagon:wagon-http-shared4 2.4
org.apache.maven.wagon:wagon-http 2.4
org.apache.maven.wagon:wagon-provider-api 2.4
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 3.0.4
org.apache.oro:oro 2.0.8
org.apache.parquet:parquet-avro 1.8.1
org.apache.parquet:parquet-column 1.8.1
org.apache.parquet:parquet-column 1.8.2
org.apache.parquet:parquet-common 1.8.1
org.apache.parquet:parquet-common 1.8.2
org.apache.parquet:parquet-encoding 1.8.1
org.apache.parquet:parquet-encoding 1.8.2
org.apache.parquet:parquet-format 2.3.0-incubating
org.apache.parquet:parquet-format 2.3.1
org.apache.parquet:parquet-hadoop 1.8.1
org.apache.parquet:parquet-hadoop 1.8.2
org.apache.parquet:parquet-jackson 1.8.1
org.apache.parquet:parquet-jackson 1.8.2
org.apache.parquet:parquet-scala_2.10 1.8.1
org.apache.spark:11 2.2.0
org.apache.spark:spark-catalyst_2.11 2.2.0
org.apache.spark:spark-core_2.11 2.2.0
org.apache.spark:spark-graphx_2.11 2.2.0
org.apache.spark:spark-launcher_2.11 2.2.0
org.apache.spark:spark-mllib-local_2.11 2.2.0
org.apache.spark:spark-mllib_2.11 2.2.0
org.apache.spark:spark-network-common_2.11 2.2.0
org.apache.spark:spark-network-shuffle_2.11 2.2.0
org.apache.spark:spark-sketch_2.11 2.2.0
org.apache.spark:spark-sql_2.11 2.2.0
org.apache.spark:spark-streaming_2.11 2.2.0
org.apache.spark:spark-tags_2.11 2.2.0
org.apache.spark:spark-unsafe_2.11 2.2.0
org.apache.xbean:xbean-asm-util 4.4
org.apache.xbean:xbean-asm5-shaded 4.4
org.apache.xbean:xbean-reflect 3.4
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.zookeeper:zookeeper 3.4.6-tests
org.apache:commons-beanutils-core 1.8.0
org.apache:ivy 2.2.0
org.apache:jsp-api 2.1
org.bdgenomics.adam:adam-core-spark2_2.11 0.20.0
org.bdgenomics.bdg-formats:bdg-formats 0.9.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.8
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.8
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.8
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.8
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.8
org.bouncycastle:bcpg-jdk15on 1.51
org.bouncycastle:bcprov-jdk15on 1.51
org.broadinstitute.hellbender.Main:gatk-package 4.0.3.0-local
org.broadinstitute.hellbender.Main:gatk-package 4.0.3.0-spark
org.broadinstitute:google-cloud-nio-GATK4-custom-patch 0.20.4-alpha-GCS-RETRY-FIX
org.codehaus.janino.commons-compiler:commons-compiler 3.0.0
org.codehaus.janino:janino 3.0.0
org.codehaus.jettison:jettison 1.1
org.codehaus.plexus:plexus-classworlds 2.4
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.5.5
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.plexus:plexus-utils 2.0.6
org.debian.security.UpdateCertificates:ca-certificates-java *
org.dom4j:dom4j 1.6.1
org.eclipse.jdt.core:core 3.1.1
org.eclipse.jdt:org.eclipse.jdt.annotation 1.1.0
org.eclipse.jetty:jetty-client 9.3.11.v20160721
org.eclipse.jetty:jetty-continuation 9.3.11.v20160721
org.eclipse.jetty:jetty-http 9.3.11.v20160721
org.eclipse.jetty:jetty-io 9.3.11.v20160721
org.eclipse.jetty:jetty-plus 9.3.11.v20160721
org.eclipse.jetty:jetty-proxy 9.3.11.v20160721
org.eclipse.jetty:jetty-security 9.3.11.v20160721
org.eclipse.jetty:jetty-server 9.3.11.v20160721
org.eclipse.jetty:jetty-servlet 9.3.11.v20160721
org.eclipse.jetty:jetty-servlets 9.3.11.v20160721
org.eclipse.jetty:jetty-util 9.3.11.v20160721
org.eclipse.jgit:org.eclipse.jgit 4.1.1.201511131810-r
org.freemarker.freemarker:freemarker 2.3.23
org.fusesource.hawtjni:hawtjni-runtime 1.9
org.fusesource.jansi:jansi-linux32 1.6
org.fusesource.jansi:jansi-linux64 1.6
org.fusesource.jansi:jansi-native 1.6
org.fusesource.jansi:jansi-osx 1.6
org.fusesource.jansi:jansi-windows32 1.6
org.fusesource.jansi:jansi-windows64 1.6
org.fusesource.jansi:jansi 1.13
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2.utils:utils 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.gradle.launcher.GradleMain:gradle-launcher 3.1
org.javassist:javassist 3.18.2-GA
org.jaxen:jaxen 1.1
org.jdom2:jdom2 2.0.5
org.jetbrains.kotlin:kotlin-compiler-embeddable 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-runtime 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-stdlib 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test-junit 1.1.0-dev-2053
org.jetbrains.kotlin:kotlin-test 1.1.0-dev-2053
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20160810
org.json4s:11 3.2.11
org.jvnet:tiger-types 1.4
org.mockito.mockito-core:mockito-core 2.10.0
org.mortbay.jetty:jetty-annotations 6.1.25
org.mortbay.jetty:jetty-naming 6.1.25
org.mortbay.jetty:jetty-plus 6.1.25
org.mortbay.jetty:jetty-sslengine 6.1.26
org.mortbay.jetty:jetty-util 6.1.25
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jetty 6.1.25
org.mortbay.jetty:jetty 6.1.26
org.mortbay.jetty:jsp-2.1 6.1.14
org.mortbay.jetty:jsp-api-2.1 6.1.14
org.mortbay.jetty:servlet-api 2.5-20081211
org.mozilla.javascript.tools.shell.Main:rhino 1.7R3
org.objectweb.asm.all:asm-all 5.1
org.objectweb.asm.commons:asm-commons 5.0.3
org.objectweb.asm.tree:asm-tree 5.0.3
org.objectweb.asm:asm 4.2
org.objectweb.asm:asm 5.0.3
org.objenesis:objenesis 1.2
org.objenesis:objenesis 2.1
org.objenesis:objenesis 2.6
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.5.11
org.scala-lang.modules.scala-parser-combinators:11 1.0.1
org.scala-lang.modules.scala-xml:11 1.0.1
org.scala-lang.scala-compiler:scala-compiler 2.11.0
org.scala-lang.scala-library:scala-library 2.11.8
org.scala-lang.scala-reflect:scala-reflect 2.11.8
org.scalanlp:11 0.13.1
org.seqdoop:hadoop-bam 7.9.1
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.7.10
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:jul-to-slf4j 1.7.10
org.slf4j:log4j-over-slf4j 1.7.10
org.slf4j:slf4j-api 1.7.10
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-log4j12 1.7.21
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-util 1.13.1
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
org.spark-project.spark:unused 1.0.0
org.spire-math:11 0.13.0
org.testng:testng 6.11
org.testng:testng 6.3.1
org.threeten:threetenbp 1.3.3
org.tukaani.xz:xz 1.5
org.typelevel:11 0.6.1
org.typelevel:11 1.1.1
org.xerial.snappy.SnappyBundleActivator:snappy-java 1.1.4
org.xerial:sqlite-jdbc 3.20.1
org.yaml:snakeyaml 1.17
org.yaml:snakeyaml 1.6
picard:picard 2.17.2
picard:picard 2.17.2-sources
pl.edu.icm:JLargeArrays 1.5
proto-google-common-protos:proto-google-common-protos 0.1.13
proto-google-iam-v1:proto-google-iam-v1 0.1.13
regexp:regexp 1.3
resources:resources 1.8.0_131
rt:rt 1.8.0_131
sa-jdi:sa-jdi *
scalap:scalap 2.11.0
shadow:shadow 1.2.3
stax-api:stax-api 1.0-2
tools:tools *
xmlenc:xmlenc 0.52
xmlpull:xmlpull 1.1.3.1
xpp3_min:xpp3_min 1.1.4c
zipfs:zipfs 1.8.0_131

python 2.7.9
python 3.6.2
python 3.6.3