Ecosyste.ms: Docker

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Package Usage : maven : ngs-java:ngs-java

Explore the latest package usage data for ngs-java:ngs-java in the maven ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 109
Total downloads: 1,624,582

More details on packages.ecosyste.ms - JSON

broadinstitute/picard 3.1.1

A set of Java command line tools for manipulating high-throughput sequencing (HTS) data and formats.

  • version: 2.9.0
Latest release: about 1 year ago - 1,091,512 downloads - 640 dependencies
biocontainers/picard-tools v2.18.25dfsg-2-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 208,967 downloads - 711 dependencies
vanallenlab/sv-pipeline-base gnomad_rf_abd6c1

  • version: 2.9.0
Latest release: almost 2 years ago - 88,219 downloads - 1,101 dependencies
dhspence/docker-genomic-analysis 122121

From Chris Miller's example

  • version: 2.9.0
Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies
biocontainers/beagle v5.0-180928dfsg-1-deb_cv1

  • version: 2.9.3
Latest release: over 5 years ago - 9,481 downloads - 533 dependencies
biocontainers/artemis v17.0.1dfsg-2-deb_cv1

  • version: 2.9.3
Latest release: over 5 years ago - 9,505 downloads - 887 dependencies
biocontainers/unicycler v0.4.7dfsg-2-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 8,525 downloads - 703 dependencies
biocontainers/chromhmm v1.18dfsg-1-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 8,427 downloads - 587 dependencies
biocontainers/pilon v1.23dfsg-1-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 8,128 downloads - 469 dependencies
biocontainers/paleomix v1.2.13.3-1-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 7,507 downloads - 1,167 dependencies
biocontainers/surankco v0.0.r5dfsg-2-deb_cv1

  • version: 2.9.3
Latest release: about 5 years ago - 7,465 downloads - 857 dependencies
dhspence/docker-trimgalore latest

trimgalore, cutadapt, on top of docker-genomic-analysis

  • version: 1.2.4
Latest release: almost 6 years ago - 3,649 downloads - 733 dependencies
dhspence/docker-amplicon-readcount latest

GATK plus custom annotation script

  • version: 1.2.2
Latest release: about 7 years ago - 3,595 downloads - 716 dependencies
dhspence/docker-spikein v1.1

  • version: 1.2.4
Latest release: about 6 years ago - 3,239 downloads - 729 dependencies
dhspence/docker-bisulfite latest

Forked from Chris Miller's docker image

  • version: 1.2.2
Latest release: almost 6 years ago - 1,968 downloads - 650 dependencies
dhspence/docker-biscuit latest

  • version: 1.2.2
Latest release: almost 6 years ago - 1,935 downloads - 807 dependencies
dhspence/docker-star latest

STAR plus helper script plus samtools

  • version: 1.2.4
Latest release: almost 7 years ago - 1,972 downloads - 729 dependencies
dhspence/docker-haloplexqc latest

Haloplex QC scripts

  • version: 1.2.4
Latest release: almost 7 years ago - 1,801 downloads - 730 dependencies
dhspence/docker-macs2 latest

  • version: 1.2.4
Latest release: over 6 years ago - 1,767 downloads - 730 dependencies
dhspence/docker-regtools latest

  • version: 1.2.4
Latest release: almost 7 years ago - 1,189 downloads - 732 dependencies
intelliseqngs/task_vcf-anno-scores 1.2.1-chrY-and-the-rest

  • version: 2.9.0
Latest release: over 1 year ago - 57,667 downloads - 633 dependencies
intelliseqngs/vcf-annotation scores-grch38_v0.2-chr19

  • version: 2.9.0
Latest release: almost 5 years ago - 11,773 downloads - 531 dependencies
dhspence/docker-smallrnaseq latest

  • version: 1.2.2
Latest release: over 6 years ago - 789 downloads - 911 dependencies
ocdr/ds-apps test2

  • version: 2.11.2
Latest release: 12 months ago - 3,555 downloads - 3,778 dependencies
dhspence/docker-subread 1.0

  • version: 1.2.4
Latest release: about 6 years ago - 674 downloads - 729 dependencies
intelliseqngs/annotsv GRCh38_1.0.0

  • version: 2.9.0
Latest release: over 4 years ago - 441 downloads - 392 dependencies
dhspence/docker-sicer latest

  • version: 2.9.0
Latest release: almost 6 years ago - 765 downloads - 1,147 dependencies
intelliseqngs/annotsv-grch38 1.0.8

  • version: 2.9.0
Latest release: almost 2 years ago - 394 downloads - 449 dependencies
vanallenlab/sv-pipeline-qc gnomad_v3_qc

  • version: 2.9.0
Latest release: almost 2 years ago - 338 downloads - 1,373 dependencies
dhspence/docker-methpipe latest

  • version: 1.2.4
Latest release: almost 6 years ago - 321 downloads - 735 dependencies
intelliseqngs/resources longranger_v0.1

  • version: 1.2.4
Latest release: over 4 years ago - 312 downloads - 1,305 dependencies
dhspence/docker-basestation latest

  • version: 2.9.0
Latest release: over 5 years ago - 308 downloads - 1,132 dependencies
qdidiscoveryservices/py3_cellranger 6.1.2

  • version: 2.10.5
Latest release: about 3 years ago - 302 downloads - 1,375 dependencies
dhspence/docker-dss latest

  • version: 2.9.0
Latest release: over 4 years ago - 367 downloads - 1,127 dependencies
dhspence/docker-ichor latest

  • version: 1.2.4
Latest release: over 6 years ago - 236 downloads - 961 dependencies
hoonbiolab/aasuite v0.1477.3

  • version: 1.2.2
Latest release: over 1 year ago - 146 downloads - 681 dependencies
dhspence/docker-minimap2 111621

  • version: 1.2.4
Latest release: about 3 years ago - 147 downloads - 734 dependencies
dhspence/docker-manta 1.5.0

  • version: 2.9.0
Latest release: almost 6 years ago - 126 downloads - 1,191 dependencies
trust1/ubuntu OMGv001

Target Capture Cloud Platform (TCCP) Oz Mammals Genomics Phylogenomics aka OMG pipeline

  • version: 1.3.0
Latest release: over 3 years ago - 123 downloads - 805 dependencies
dhspence/docker-hiccompare latest

  • version: 2.9.0
Latest release: over 3 years ago - 113 downloads - 1,271 dependencies
dhspence/docker-skewer latest

base image with skewer for read trimming

  • version: 1.2.4
Latest release: almost 6 years ago - 76 downloads - 279 dependencies
kentwait/gatk latest

Dockerized GATK for genomics analysis

  • version: 1.2.4
Latest release: over 7 years ago - 68 downloads - 371 dependencies
jlund256/xeno_rna-seq latest

  • version: 2.9.0
Latest release: almost 2 years ago - 1,351 downloads - 902 dependencies
dhspence/docker-mosdepth latest

  • version: 1.2.4
Latest release: almost 6 years ago - 60 downloads - 754 dependencies
dhspence/docker-vep 93

  • version: 2.9.0
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
evolbioinfo/igv v2.9.0

  • version: 2.9.0
Latest release: almost 4 years ago - 42 downloads - 1,009 dependencies
dhspence/docker-concordance ngv3-exome-GRCh37

GATK, Picard, and dbSNP files for tumor/normal concordance checking

  • version: 1.2.4, 1.2.2
Latest release: about 7 years ago - 38 downloads - 1,012 dependencies
intelliseqngs/picard v2.21.4

  • version: 2.9.0
Latest release: almost 5 years ago - 35 downloads - 644 dependencies
dhspence/docker-cle-cwl latest

from mgibio with cwl in there too

  • version: 1.2.2
Latest release: about 7 years ago - 33 downloads - 1,402 dependencies
dmiller15/annotsv 3.1.1

  • version: 2.9.0
Latest release: almost 3 years ago - 29 downloads - 284 dependencies
jpsmith5/peppro latest

  • version: 2.11.2
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
broadinstitute/gatk-test 4.0-prerelease-1efafd2b5

  • version: 1.2.4
Latest release: almost 7 years ago - 23 downloads - 1,213 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 2.11.2
Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies
mrkevindc/add latest

  • version: 2.9.0
Latest release: almost 2 years ago - 21 downloads - 621 dependencies
dhspence/docker-annotsv latest

  • version: 2.9.0
Latest release: almost 3 years ago - 21 downloads - 563 dependencies
ctomlins/nanopore-rna-pipeline latest

  • version: 2.10.2
Latest release: about 3 years ago - 21 downloads - 717 dependencies
aminhaghparast/genomics21 2.12

  • version: 2.10.2
Latest release: almost 2 years ago - 12 downloads - 522 dependencies
mqmnd/fastqc amd-0.11.9

  • version: 2.11.2
Latest release: almost 2 years ago - 97 downloads - 315 dependencies
dhspence/docker-wg-basestation latest

  • version: 2.9.0
Latest release: about 4 years ago - 13 downloads - 1,126 dependencies
pedrojf/annotsv 3.2.3

  • version: 2.9.0
Latest release: over 1 year ago - 197 downloads - 356 dependencies
evolomicsmbbt/rna_seq latest

  • version: 2.11.2
Latest release: almost 2 years ago - 62 downloads - 412 dependencies
shahcompbio/igver latest

  • version: 2.9.0
Latest release: over 1 year ago - 227 downloads - 258 dependencies
gene110/vep_filter v07

  • version: 1.3.0
Latest release: over 3 years ago - 10 downloads - 1,164 dependencies
hoonbiolab/aa_tools v2.3.1.1

  • version: 1.2.2
Latest release: about 3 years ago - 12 downloads - 432 dependencies
testalab/annotsv v3.2.3

  • version: 2.9.0
Latest release: over 1 year ago - 15 downloads - 192 dependencies
dhspence/docker-demux latest

  • version: 1.2.4
Latest release: almost 4 years ago - 9 downloads - 295 dependencies
dhspence/docker-genomic-analysis-lite 102321

  • version: 2.9.0
Latest release: about 3 years ago - 10 downloads - 397 dependencies
mrkevindc/umis latest

  • version: 2.9.0
Latest release: over 1 year ago - 14 downloads - 373 dependencies
lucifer001/javasarala-dev-ab123 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 10 downloads - 2,047 dependencies
nanjiang/apollo latest

  • version: 2.9.0
Latest release: over 1 year ago - 9 downloads - 695 dependencies
lucifer001/javasarala-be-test latest

  • version: 2.11.2
Latest release: almost 2 years ago - 9 downloads - 2,047 dependencies
jieliu4wustl/wustl v0.1_20230907

  • version: 2.10.2
Latest release: about 1 year ago - 4,483 downloads - 1,124 dependencies
carlokroll/exomiser-cli 13.2.0

  • version: 2.9.0
Latest release: over 1 year ago - 41 downloads - 75 dependencies
jinlongru/webin-cli latest

  • version: 2.9.0
Latest release: over 1 year ago - 13 downloads - 186 dependencies
genepattern/start.aligner v0.45

  • version: *
Latest release: almost 2 years ago - 10 downloads - 25 dependencies
lucifer001/javasarala-be-test1 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 9 downloads - 2,047 dependencies
lucifer001/javasarala-ui-workspace1631250329 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 8 downloads - 1,992 dependencies
srynobio/diagnostic_rnaseq latest

  • version: 2.11.2
Latest release: over 1 year ago - 108 downloads - 1,441 dependencies
lucifer001/sachakala-be-qwertyuiop latest

  • version: 2.11.2
Latest release: almost 2 years ago - 8 downloads - 2,927 dependencies
lucifer001/sachakala-ui-test3333 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 7 downloads - 2,924 dependencies
lucifer001/sachakala-be-test-109-101 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 7 downloads - 2,461 dependencies
lucifer001/aanto-dev-w1 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 9 downloads - 2,924 dependencies
lucifer001/sachakala-be-filebrowsertest latest

  • version: 2.11.2
Latest release: almost 2 years ago - 7 downloads - 2,715 dependencies
lucifer001/javasarala-be-test1101 latest

  • version: 2.11.2
Latest release: almost 2 years ago - 7 downloads - 2,511 dependencies
lucifer001/asarda-qa-test1234 02-22-23-12-16-56

  • version: 2.11.2
Latest release: over 1 year ago - 8 downloads - 3,106 dependencies
amirshams/spipe 1.0.7

  • version: 2.10.9
Latest release: over 1 year ago - 11 downloads - 594 dependencies
steepale/picard_tools 2.27.5

  • version: 2.9.0
Latest release: almost 2 years ago - 10 downloads - 693 dependencies
lucifer001/default-dev-backup-test 04-26-23-12-15-34

  • version: 2.11.2
Latest release: over 1 year ago - 8 downloads - 3,484 dependencies
jyesselm/rna-map latest

  • version: 2.10.9
Latest release: almost 2 years ago - 9 downloads - 551 dependencies
qtulab/miniencode latest

  • version: 2.11.2
Latest release: about 1 year ago - 56 downloads - 4,269 dependencies
benpasto/hyb latest

  • version: 2.10.9
Latest release: over 1 year ago - 8 downloads - 568 dependencies