ctomlins/tseq_2 : latest

Latest release: over 5 years ago - 30 downloads - 538 dependencies

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Dependencies

DBI 1.0.0
IRdisplay 0.7.0
IRkernel 1.0.2
KernSmooth 2.23-15
MASS 7.3-51.4
Matrix 1.2-17
ModelMetrics 1.2.2.2
R6 2.4.0
RColorBrewer 1.1-2
Rcpp 1.0.2
SQUAREM 2017.10-1
TTR 0.23-5
askpass 1.1
assertthat 0.2.1
backports 1.1.5
base64enc 0.1-3
base 3.6.1
boot 1.3-23
broom 0.5.2
callr 3.3.2
caret 6.0-84
cellranger 1.1.0
class 7.3-15
cli 1.1.0
clipr 0.7.0
cluster 2.1.0
codetools 0.2-16
colorspace 1.4-1
compiler 3.6.1
crayon 1.3.4
curl 4.2
data.table 1.12.4
datasets 3.6.1
dbplyr 1.4.2
digest 0.6.21
dplyr 0.8.3
ellipsis 0.3.0
evaluate 0.14
fansi 0.4.0
fastqcr 0.1.2
forcats 0.4.0
foreach 1.4.7
foreign 0.8-72
formatR 1.7
fs 1.3.1
generics 0.0.2
ggplot2 3.2.1
glmnet 2.0-18
glue 1.3.1
gower 0.2.1
grDevices 3.6.1
graphics 3.6.1
grid 3.6.1
gridExtra 2.3
gtable 0.3.0
haven 2.1.1
hexbin 1.27.3
highr 0.8
hms 0.5.1
htmltools 0.4.0
htmlwidgets 1.5.1
httpuv 1.5.2
httr 1.4.1
ipred 0.9-9
iterators 1.0.12
jsonlite 1.6.1
kableExtra 1.1.0
knitr 1.25
labeling 0.3
later 1.0.0
lattice 0.20-38
lava 1.6.6
lazyeval 0.2.2
lifecycle 0.1.0
linkXTS 1.0
lubridate 1.7.4
magrittr 1.5
maps 3.3.0
markdown 1.1
methods 3.6.1
mgcv 1.8-29
mime 0.7
modelr 0.1.5
munsell 0.5.0
nlme 3.1-141
nnet 7.3-12
numDeriv 2016.8-1.1
openssl 1.4.1
parallel 3.6.1
pbdZMQ 0.3-3
pillar 1.4.2
pkgconfig 2.0.3
plogr 0.2.0
plyr 1.8.4
prettyunits 1.0.2
processx 3.4.1
prodlim 2018.04.18
progress 1.2.2
promises 1.1.0
ps 1.3.0
purrr 0.3.2
quantmod 0.4-15
randomForest 4.6-14
rbokeh 0.6.3
readr 1.3.1
readxl 1.3.1
recipes 0.1.7
rematch 1.0.1
repr 1.0.1
reprex 0.3.0
reshape2 1.4.3
reshape 0.8.8
rlang 0.4.0
rmarkdown 1.16
rpart 4.1-15
rstudioapi 0.10
rvest 0.3.4
scales 1.0.0
selectr 0.4-1
shiny 1.3.2
sourcetools 0.1.7
spatial 7.3-11
splines 3.6.1
stats4 3.6.1
stats 3.6.1
stringi 1.4.3
stringr 1.4.0
survival 2.44-1.1
sys 3.3
tcltk 3.6.1
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 2.1.3
tidyr 1.0.0
tidyselect 0.2.5
tidyverse 1.2.1
timeDate 3043.102
tinytex 0.16
tools 3.6.1
translations 3.6.1
utf8 1.1.4
utils 3.6.1
uuid 0.1-2
vctrs 0.2.0
viridisLite 0.3.0
webshot 0.5.1
whisker 0.4
withr 2.1.2
xfun 0.10
xml2 1.2.2
xtable 1.8-4
xts 0.11-2
yaml 2.2.0
zeallot 0.1.0
zoo 1.8-6

bash 4.4.20
python 3.6.9
python 3.7.3

US_export_policy:US_export_policy *
args4j:args4j 2.33
charsets:charsets *
cisd-jhdf5:cisd-jhdf5 *
cldrdata:cldrdata *
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.4.0
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.6.7.1
com.fasterxml.jackson.module:jackson-module-paranamer 2.7.9
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.google.api-client:google-api-client 1.30.2
com.google.apis:google-api-services-storage v1-rev20190624-1.30.1
com.google.apis:google-api-services-storage v1-rev35-1.20.0
com.google.auth:google-auth-library-credentials 0.17.1
com.google.auth:google-auth-library-oauth2-http 0.17.1
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud.bigdataoss:gcs-connector 1.6.3-hadoop2
com.google.cloud.bigdataoss:gcsio 1.6.3
com.google.cloud.bigdataoss:util-hadoop 1.6.3-hadoop2
com.google.cloud.bigdataoss:util 1.6.3
com.google.cloud:google-cloud-core-http 1.89.0
com.google.cloud:google-cloud-core 1.89.0
com.google.cloud:google-cloud-nio 0.107.0-alpha
com.google.cloud:google-cloud-storage 1.89.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.5
com.google.errorprone:error_prone_annotations 2.3.3
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 18.0
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.31.0
com.google.http-client:google-http-client-jackson2 1.31.0
com.google.http-client:google-http-client 1.31.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.30.1
com.google.protobuf:protobuf-java-util 3.9.1
com.google.protobuf:protobuf-java 3.9.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.nimbusds:nimbus-jose-jwt 3.9
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.4.0
com.squareup.okio:okio 1.4.0
com.sun.jersey.contribs:jersey-guice 1.9
com.sun.jersey:jersey-client 1.9
com.sun.jersey:jersey-core 1.9
com.sun.jersey:jersey-json 1.9
com.sun.jersey:jersey-server 1.9
com.sun:jce 1.8.0_192
com.sun:sunec 1.8.0_192
com.sun:sunjce_provider 1.8.0_192
com.sun:sunpkcs11 1.8.0_192
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.11
commons-collections:commons-collections 3.2.2
commons-configuration:commons-configuration 1.6
commons-io:commons-io 1.4
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.1
commons-pool:commons-pool 1.6
de.javakaffee:kryo-serializers 0.42
dnsns:dnsns *
dt:dt *
gov.nist.math.jama:gov.nist.math.jama 1.1.1
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.17.Final
io.netty:netty 3.9.9.Final
jaccess:jaccess *
jarhdf5:jarhdf5 2.11.0
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
jbzip2:jbzip2 0.9
jconsole:jconsole *
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jsse:jsse 1.8.0_192
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.17
management-agent:management-agent *
nashorn:nashorn 1.8.0_192-b01
net.grey-panther:natural-comparator 1.1
net.minidev:json-smart 1.1.1
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-compress 1.8.1
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.7.1
org.apache.curator:curator-framework 2.7.1
org.apache.curator:curator-recipes 2.7.1
org.apache.directory.api:api-util 1.0.0-M20
org.apache.hadoop:hadoop-annotations 2.8.2
org.apache.hadoop:hadoop-auth 2.8.2
org.apache.hadoop:hadoop-client 2.8.2
org.apache.hadoop:hadoop-common 2.8.2
org.apache.hadoop:hadoop-hdfs-client 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-app 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-common 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-core 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-jobclient 2.8.2
org.apache.hadoop:hadoop-mapreduce-client-shuffle 2.8.2
org.apache.hadoop:hadoop-yarn-api 2.8.2
org.apache.hadoop:hadoop-yarn-client 2.8.2
org.apache.hadoop:hadoop-yarn-common 2.8.2
org.apache.hadoop:hadoop-yarn-server-common 2.8.2
org.apache.hadoop:hadoop-yarn-server-nodemanager 2.8.2
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.0.1-incubating
org.apache.httpcomponents:httpclient 4.5.9
org.apache.httpcomponents:httpcore 4.4.11
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.5
org.apache.logging.log4j:log4j-jcl 2.3
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.spark:spark-catalyst_2.11 2.4.3
org.apache.spark:spark-core_2.11 2.4.3
org.apache.spark:spark-graphx_2.11 2.4.3
org.apache.spark:spark-kvstore_2.11 2.4.3
org.apache.spark:spark-launcher_2.11 2.4.3
org.apache.spark:spark-mllib-local_2.11 2.4.3
org.apache.spark:spark-mllib_2.11 2.4.3
org.apache.spark:spark-network-common_2.11 2.4.3
org.apache.spark:spark-network-shuffle_2.11 2.4.3
org.apache.spark:spark-sketch_2.11 2.4.3
org.apache.spark:spark-sql_2.11 2.4.3
org.apache.spark:spark-streaming_2.11 2.4.3
org.apache.spark:spark-tags_2.11 2.4.3
org.apache.spark:spark-unsafe_2.11 2.4.3
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.broadinstitute.hellbender.Main:gatk-package 4.1.4.0-local
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.disq-bio:disq 0.3.3
org.eclipse.jetty:jetty-client 9.3.24.v20180605
org.eclipse.jetty:jetty-continuation 9.3.24.v20180605
org.eclipse.jetty:jetty-http 9.3.24.v20180605
org.eclipse.jetty:jetty-io 9.3.24.v20180605
org.eclipse.jetty:jetty-plus 9.3.24.v20180605
org.eclipse.jetty:jetty-proxy 9.3.24.v20180605
org.eclipse.jetty:jetty-security 9.3.24.v20180605
org.eclipse.jetty:jetty-server 9.3.24.v20180605
org.eclipse.jetty:jetty-servlet 9.3.24.v20180605
org.eclipse.jetty:jetty-servlets 9.3.24.v20180605
org.eclipse.jetty:jetty-util 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.1.0.1
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.18.2-GA
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.jvnet:tiger-types 1.4
org.mortbay.jetty:jetty-sslengine 6.1.26
org.mortbay.jetty:jetty-util 6.1.26
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-log4j12 1.7.21
org.spark-project.spark:unused 1.0.0
org.threeten:threetenbp 1.3.3
org.xerial:sqlite-jdbc 3.20.1
picard:picard 2.21.1-SNAPSHOT
resources:resources 1.8.0_192
rt:rt 1.8.0_192
sa-jdi:sa-jdi *
sam:sam 1.103
tools:tools *
zipfs:zipfs 1.8.0_192

casperjs 1.1.0-beta5
jquery-ui 1.12.1

ConfigArgParse 0.14.0
GitPython 3.0.3
Jinja2 2.10.3
MarkupSafe 1.1.1
PyGObject 3.26.1
PyNaCl 1.3.0
PyQt5 5.12.3
PyQt5_sip 4.19.18
PyQtWebEngine 5.12.1
PySocks 1.7.1
PyYAML 5.1.2
Pygments 2.4.2
Send2Trash 1.5.0
aioeasywebdav 2.4.0
aiohttp 3.6.1
appdirs 1.4.3
asn1crypto 1.0.1
async-timeout 3.0.1
attrs 19.2.0
awscli 1.16.254
backcall 0.1.0
bcrypt 3.1.7
bleach 3.1.0
boto3 1.9.244
botocore 1.12.244
cachetools 2.1.0
certifi 2019.9.11
cffi 1.12.3
chardet 3.0.4
colorama 0.4.1
cryptography 2.7
cutadapt 2.5
cycler 0.10.0
datrie 0.8.2
decorator 4.4.0
defusedxml 0.6.0
dnaio 0.3
docutils 0.15.2
dropbox 9.4.0
entrypoints 0.3
filechunkio 1.8
ftputil 3.4
gitdb2 2.0.6
google-api-core 1.14.3
google-auth 1.6.3
google-cloud-core 1.0.3
google-cloud-storage 1.20.0
google-resumable-media 0.4.1
googleapis-common-protos 1.6.0
html5lib 1.0.1
idna 2.8
ipykernel 5.1.2
ipython-genutils 0.2.0
ipython 7.8.0
jedi 0.15.1
jmespath 0.9.4
jsonschema 3.0.2
jupyter-client 5.3.3
jupyter-core 4.5.0
kiwisolver 1.1.0
matplotlib 3.1.1
mistune 0.8.4
multidict 4.5.2
nbconvert 5.6.0
nbformat 4.4.0
networkx 2.3
notebook 6.0.1
numpy 1.17.2
pandas 0.25.1
pandocfilters 1.4.2
paramiko 2.6.0
parso 0.5.1
pexpect 4.7.0
pickleshare 0.7.5
pip 19.2.3
prettytable 0.7.2
prometheus-client 0.7.1
prompt-toolkit 2.0.10
protobuf 3.10.0
psutil 5.6.3
ptyprocess 0.6.0
pyOpenSSL 19.0.0
pyasn1-modules 0.2.6
pyasn1 0.4.7
pycparser 2.19
pygraphviz 1.3
pyparsing 2.4.2
pyrsistent 0.15.4
pysam 0.15.3
pysftp 0.2.9
python-dateutil 2.8.0
python-irodsclient 0.7.0
pytz 2019.3
pyzmq 18.1.0
ratelimiter 1.2.0
requests 2.22.0
rsa 3.4.2
s3transfer 0.2.1
setuptools 41.4.0
six 1.12.0
smmap2 2.0.5
snakemake 5.7.0
terminado 0.8.2
testpath 0.4.2
tornado 6.0.3
traitlets 4.3.3
urllib3 1.25.6
wcwidth 0.1.7
webencodings 0.5.1
wheel 0.33.6
wrapt 1.11.2
xmlrunner 1.7.7
xopen 0.8.2
yarl 1.3.0

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ctomlins/tseq_2 : latest

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